Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009465

Physical Location & Seq

Genomic Coordinates Reverse (-)

8035859 .. 8036379

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1110600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGCATCAGGATAATAGTGGATCTGTAGCCGTGGAGGCACTACAGGAGCTTTTTACTGGTGATGGACAGTCTAAGAAGGGACGAAGAGGGCAAAACGAGGTGTTACGAAGATATGCCGCTTCAAGAAATGCAAGCAACTCAGGAGCAACAGACCATTCAAAAAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006950 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007266 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0009893 GO:0009966 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0012501 GO:0016043 GO:0016301 GO:0016310 GO:0016477 GO:0016740 GO:0016772 GO:0016773 GO:0017016 GO:0017048 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0023014 GO:0023051 GO:0023052 GO:0030029 GO:0030036 GO:0031098 GO:0031267 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0040011 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048365 GO:0048518 GO:0048522 GO:0048583 GO:0048870 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051674 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

57

Amino Acids

6.08

Weight (kDa)

9.52

Isoelectric Point (pI)

64.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69220 AT1G69220
fragaria_vesca	FvH4_3g31814 FvH4_4g29800 FvH4_4g29800
malus_domestica	MD13G1060400.v1.1 MD13G1110600.v1.1 MD16G1059600.v1.1
prunus_persica	Prupe.1G289000_v2.0.a1
pyrus_communis	pycom13g05380 pycom16g05200
rosa_chinensis	RchiOBHm_Chr4g0438031
rosa_laevigata	RLG00000006392
rosa_multiflora	Rmu_sc0007538.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379170
rosa_rugosa	Rorug04G0306400
rosa_samantha	Rh4AG358000 Rh4BG368900 Rh4CG382900 Rh4DG363700
rosa_wichuraiana	Rw0G006250 Rw0G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	123, 159
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AlwI	GGATC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	71
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	24, 41
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	152
BspPI	GGATC	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	72, 139
BstDSI	CCRYGG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSFI	CTRYAG	2 cut(s)	24, 41
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	133
CviJI	RGCY	2 cut(s)	29, 49
CviKI_1	RGCY	2 cut(s)	29, 49
DdeI	CTNAG	2 cut(s)	72, 139
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	1 cut(s)	114
FaqI	GGGAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HphI	GGTGA	1 cut(s)	71
Hpy188III	TCNNGA	3 cut(s)	8, 123, 141
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	4, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	72, 139
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	46, 143
LpnPI	CCDG	3 cut(s)	29, 42, 126
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	96, 120
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	1 cut(s)	163
MnlI	CCTC	3 cut(s)	28, 80, 91
Mph1103I	ATGCAT	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	20
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	20
SetI	ASST	2 cut(s)	51, 102
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	24, 41
SgeI	CNNG	8 cut(s)	20, 43, 56, 69, 109, 135, 144, 153
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	69
TasI	AATT	1 cut(s)	163
TauI	GCSGC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.