Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013725

Physical Location & Seq

Genomic Coordinates Forward (+)

26509878 .. 26510933

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1249600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCAAGCTTACACGTACATCTCGGACTCATAAATTGCGTAAAGTCGTCTTTGTATCTGTCAAAGGCATATATTATCAGTTTGAGTCTACTGAGTTCTGCGGATTCCCTCAATTGCAATCATCTCTTCTGCAACACTTGCACCGTGAAGTTGATGAAATCGGGTTCCATTTGTCCAGTTTATAAAATTCCATATCGACGCAGAGGCACTGGGAAGACGACTCTGTCTACGGATCATAATCGGTATCTACTTGGAGATGATGAGCACTGCTGGAGCAACAATGGTGTGTCAAACATTGAAGGTGGTTGCTATGCCAAGTGTATTGATTTGTCAAGGGACAAGGAACCAGATATTTGGAATGCTATCAAATTTGGGACTGGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008219 GO:0009987 GO:0012501 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0022414 GO:0031436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1903046 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01524 ko03440 ko03460 ko04120 ko04151 ko05206 ko05224 map01524 map03440 map03460 map04120 map04151 map05206 map05224

Pfam Domains

Protein Families

BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

129

Amino Acids

14.14

Weight (kDa)

8.63

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	69 - 126	6.7e-29	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013725)

Species	Orthologous Gene IDs
malus_domestica	MD04G1109800.v1.1 MD10G1043800.v1.1 MD12G1143800.v1.1 MD13G1249600.v1.1 MD15G1297700.v1.1 MD17G1274500.v1.1
pyrus_communis	pycom03g05430
rosa_laevigata	RLG00000006683
rosa_roxburghii	Rroxscaffold_2G00103460 Rroxscaffold_2G00125490
rosa_rugosa	Rorug02G0192900 Rorug02G0248400 Rorug03G0217800 Rorug03G0231100 Rorug05G0259200 Rorug05G0362400
rosa_samantha	Rh7BG038900
rosa_wichuraiana	Rw6G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AasI	GACNNNNNNGTC	1 cut(s)	223
AccI	GTMKAC	2 cut(s)	88, 227
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	240
AcsI	RAATTY	2 cut(s)	186, 368
AfaI	GTAC	2 cut(s)	18, 382
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	299
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	240
ApoI	RAATTY	2 cut(s)	186, 368
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	267
BmiI	GGNNCC	2 cut(s)	166, 345
BmrI	ACTGGG	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	237
Bse1I	ACTGG	3 cut(s)	176, 214, 382
Bse8I	GATNNNNATC	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	3 cut(s)	176, 214, 382
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	166, 345
BspPI	GGATC	1 cut(s)	240
BsrI	ACTGG	3 cut(s)	176, 214, 382
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	207, 265
Cac8I	GCNNGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	17, 381
CviJI	RGCY	1 cut(s)	9
CviKI_1	RGCY	1 cut(s)	9
CviQI	GTAC	2 cut(s)	17, 381
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
FaiI	YATR	7 cut(s)	32, 70, 72, 183, 193, 237, 312
FaqI	GGGAC	1 cut(s)	350
FblI	GTMKAC	2 cut(s)	88, 227
GsuI	CTGGAG	1 cut(s)	292
HgaI	GACGC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	4 cut(s)	27, 85, 104, 220
Hpy166II	GTNNAC	2 cut(s)	89, 228
Hpy188I	TCNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	89, 228
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	117, 132, 141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	5 cut(s)	189, 195, 256, 360, 363
MaeII	ACGT	1 cut(s)	15
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	118, 226
MfeI	CAATTG	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	4 cut(s)	34, 112, 186, 368
MlyI	GAGTC	3 cut(s)	21, 94, 214
MnlI	CCTC	2 cut(s)	119, 197
MseI	TTAA	1 cut(s)	385
MunI	CAATTG	1 cut(s)	112
Mva1269I	GAATGC	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	1 cut(s)	232
NlaIV	GGNNCC	2 cut(s)	166, 345
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	104
PflFI	GACNNNGTC	1 cut(s)	223
PleI	GAGTC	3 cut(s)	21, 93, 214
PpsI	GAGTC	3 cut(s)	21, 93, 214
Ppu21I	YACGTR	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	166, 345
PsyI	GACNNNGTC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	18, 382
RsaNI	GTAC	2 cut(s)	17, 381
SaqAI	TTAA	1 cut(s)	385
Sau3AI	GATC	1 cut(s)	232
SchI	GAGTC	3 cut(s)	21, 94, 214
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	3 cut(s)	11, 18, 304
Sse9I	AATT	4 cut(s)	34, 112, 186, 368
SsiI	CCGC	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	196
TasI	AATT	4 cut(s)	34, 112, 186, 368
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TscAI	CASTG	2 cut(s)	214, 272
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	214, 272
Tth111I	GACNNNGTC	1 cut(s)	223
XapI	RAATTY	2 cut(s)	186, 368
XmiI	GTMKAC	2 cut(s)	88, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.