Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013725

Physical Location & Seq

Genomic Coordinates Forward (+)

26091162 .. 26103670

Gene Structure 12509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCGCTGTCAATTGAGCTACTTAGTTGTGTCCAATGGTCCAGGTCATCAAAGGCATACCAGAAGCGATCGAGAATATCAAATGGATACCTAAAGAAAGCAGTTCACGATGCGTGCGACGAGTTGATTGAGGTTTTGAAGGAATATTGGATGACCAAGAAACTGAGAAAACAACTCTTGTCTGCAGATCATAATACATGCCTGATTGGAGAAGACGAGCACTACTACAGTGACAATCATGTGTCAAACATTGAAGGTGGTTGCTATGCTAAGTGCATTGATTTGTCAAAAGACAAGCAACCAGATATTTGGAATTCTATCAAATTTGAGACTGTGTACAAAGCTGAATTCTTTATGTGTCTAGCAACTGCAAGATTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

127

Amino Acids

14.75

Weight (kDa)

7.6

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	58 - 112	3.2e-19	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013725)

Species	Orthologous Gene IDs
malus_domestica	MD04G1109800.v1.1 MD10G1043800.v1.1 MD12G1143800.v1.1 MD13G1249600.v1.1 MD15G1297700.v1.1 MD17G1274500.v1.1
pyrus_communis	pycom03g05430
rosa_laevigata	RLG00000006683
rosa_roxburghii	Rroxscaffold_2G00103460 Rroxscaffold_2G00125490
rosa_rugosa	Rorug02G0192900 Rorug02G0248400 Rorug03G0217800 Rorug03G0231100 Rorug05G0259200 Rorug05G0362400
rosa_samantha	Rh7BG038900
rosa_wichuraiana	Rw6G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	313, 323, 347
AfaI	GTAC	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	139, 254, 379
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	19, 344
AluI	AGCT	2 cut(s)	19, 344
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	313, 323, 347
AspS9I	GGNCC	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	2 cut(s)	183, 226
BfuI	GTATCC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	68, 187
BspCNI	CTCAG	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	336
BssMI	GATC	2 cut(s)	68, 187
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	230, 334
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	3 cut(s)	23, 164, 270
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	71, 190
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	68, 187
BstMCI	CGRYCG	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	2 cut(s)	183, 226
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	198, 239
CviJI	RGCY	2 cut(s)	19, 344
CviKI_1	RGCY	2 cut(s)	19, 344
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	23, 164, 270
DpnI	GATC	2 cut(s)	70, 189
DpnII	GATC	2 cut(s)	68, 187
Eco47I	GGWCC	1 cut(s)	39
EcoRI	GAATTC	2 cut(s)	313, 347
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	2 cut(s)	201, 242
FaiI	YATR	6 cut(s)	58, 192, 199, 240, 267, 356
FatI	CATG	2 cut(s)	197, 238
FokI	GGATG	1 cut(s)	163
FspBI	CTAG	1 cut(s)	362
Hin1II	CATG	2 cut(s)	201, 242
Hpy166II	GTNNAC	2 cut(s)	106, 337
Hpy188III	TCNNGA	2 cut(s)	72, 107
Hpy8I	GTNNAC	2 cut(s)	106, 337
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	133, 248
HpyCH4III	ACNGT	2 cut(s)	230, 334
HpyCH4V	TGCA	3 cut(s)	185, 276, 371
HpyF3I	CTNAG	3 cut(s)	23, 164, 270
Hsp92II	CATG	2 cut(s)	201, 242
Kzo9I	GATC	2 cut(s)	68, 187
LpnPI	CCDG	5 cut(s)	28, 55, 74, 215, 315
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	70, 189
MboI	GATC	2 cut(s)	68, 187
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	5 cut(s)	12, 313, 323, 347, 379
MnlI	CCTC	1 cut(s)	124
MseI	TTAA	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	68, 187
NlaIII	CATG	2 cut(s)	201, 242
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
Ple19I	CGATCG	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	382
Sau3AI	GATC	2 cut(s)	68, 187
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	21, 47, 93, 135, 259, 346
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	183, 226
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	5 cut(s)	12, 313, 323, 347, 379
SspI	AATATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	230, 334
TaqI	TCGA	1 cut(s)	71
TasI	AATT	5 cut(s)	12, 313, 323, 347, 379
TatI	WGTACW	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	39
XapI	RAATTY	3 cut(s)	313, 323, 347
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.