Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013725

Physical Location & Seq

Genomic Coordinates Reverse (-)

33605546 .. 33612409

Gene Structure 6864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1274500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAGGCCGAGGTTAAGGGGCAAAAAATCACATGGTTGACCCCTCACCCTTTGCATTTGAGTCTACTGAGTTCTGCGGATTCACTCAATTGCAATCATCTCTTCTACAACACTTGCACCGTGAAGTCGATGAAATTGGGTTCCATTTGTCCAGTTTATAAAATTCCATATCGACGCAGAGGCACTGGGAAGACGACTCTGTCTACGGATCATAATCGGTATCTAATTGGAGATGATGAGCACTGCTGGGGCAACAATGGTGTGTCAAACATTGAAGGTGGTTGCTATGCCAAGTGCATTGATTTGTCAATGGACAAGGAACCAGATATTTGGAATGCTATCAAATTTGGGACTGTTTTGGAGAATGTCGTGTTCGATGACCATAATCGAGAAGTTGATTACTCAGAGAAATCTGTTACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008219 GO:0009987 GO:0012501 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0022414 GO:0031436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1903046 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01524 ko03440 ko03460 ko04120 ko04151 ko05206 ko05224 map01524 map03440 map03460 map04120 map04151 map05206 map05224

Pfam Domains

Protein Families

BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

142

Amino Acids

15.91

Weight (kDa)

6.28

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	61 - 140	3.1e-39	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013725)

Species	Orthologous Gene IDs
malus_domestica	MD04G1109800.v1.1 MD10G1043800.v1.1 MD12G1143800.v1.1 MD13G1249600.v1.1 MD15G1297700.v1.1 MD17G1274500.v1.1
pyrus_communis	pycom03g05430
rosa_laevigata	RLG00000006683
rosa_roxburghii	Rroxscaffold_2G00103460 Rroxscaffold_2G00125490
rosa_rugosa	Rorug02G0192900 Rorug02G0248400 Rorug03G0217800 Rorug03G0231100 Rorug05G0259200 Rorug05G0362400
rosa_samantha	Rh7BG038900
rosa_wichuraiana	Rw6G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AasI	GACNNNNNNGTC	1 cut(s)	199
AccI	GTMKAC	2 cut(s)	64, 203
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	2 cut(s)	162, 344
AgsI	TTSAA	1 cut(s)	275
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	162, 344
AsuHPI	GGTGA	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	142, 321
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	9
Bse1I	ACTGG	2 cut(s)	152, 190
Bse8I	GATNNNNATC	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	9
BseJI	GATNNNNATC	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	59, 417
BseNI	ACTGG	2 cut(s)	152, 190
BseYI	CCCAGC	1 cut(s)	246
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	60, 416
BspLI	GGNNCC	2 cut(s)	142, 321
BspPI	GGATC	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	152, 190
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	121, 355, 421
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	68, 403
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	183, 241
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	183
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	1 cut(s)	8
CviKI_1	RGCY	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	68, 403
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DrdI	GACNNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
FaeI	CATG	1 cut(s)	36
FaiI	YATR	6 cut(s)	34, 159, 169, 213, 288, 384
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	32
FblI	GTMKAC	2 cut(s)	64, 203
GsaI	CCCAGC	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	8
HgaI	GACGC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	61, 80, 196
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	39, 65, 204
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	3 cut(s)	39, 65, 204
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	3 cut(s)	121, 355, 421
HpyCH4V	TGCA	5 cut(s)	4, 55, 93, 117, 297
HpyF3I	CTNAG	2 cut(s)	68, 403
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	208
LpnPI	CCDG	4 cut(s)	165, 171, 232, 336
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	94, 202
MfeI	CAATTG	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	5 cut(s)	88, 134, 162, 225, 344
MlyI	GAGTC	2 cut(s)	70, 190
MnlI	CCTC	3 cut(s)	4, 54, 173
MseI	TTAA	1 cut(s)	15
MunI	CAATTG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	340
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	142, 321
NmeAIII	GCCGAG	1 cut(s)	34
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	199
PleI	GAGTC	2 cut(s)	69, 190
PpsI	GAGTC	2 cut(s)	69, 190
PsiI	TTATAA	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	142, 321
PsyI	GACNNNGTC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	70, 190
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	2 cut(s)	15, 280
Sse9I	AATT	5 cut(s)	88, 134, 162, 225, 344
SsiI	CCGC	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	121, 355, 421
TaqI	TCGA	4 cut(s)	128, 172, 375, 388
TasI	AATT	5 cut(s)	88, 134, 162, 225, 344
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	190, 248
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	190, 248
Tth111I	GACNNNGTC	1 cut(s)	199
XapI	RAATTY	2 cut(s)	162, 344
XmiI	GTMKAC	2 cut(s)	64, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.