Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013725

Physical Location & Seq

Genomic Coordinates Reverse (-)

60347261 .. 60352007

Gene Structure 4747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTGATCCGAAGGGCGAGAGCACTGAAGTTCGGGGTTACTGAAGTAACTACGGGGATGTTGATCCGAAGGCCGAGAGCTTTACGAAGTTCATGGAAGTTACAAAGTCGGAACACAGGGATGTTGATCCGAGGGCGAGAGCCCAAAGTTCGGGATCATAATACATGCCTGATTGGAGAAGACGAGCACTGCTACAGTGACAATCATGTGTCAAACATTGAAGGTGGTTGCTATGCTAAGTGCATTGATTTGTCAAAAGACAAGCAACCAGATATTTGGAATTCTATCAAATTTGAGACTGGCCAAATAAAGGAGGTCTTCACCATTGTTCCACGGTCAATCTTTCAGAAAGGCATCATTGTGTCTCCACCGCCGAGCATGTTGCCAATCTTTCAGCGCTCTGCCTATCTGACTCTTGGAAGTTCCATTTTGTTTGCAGGATTAGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

150

Amino Acids

16.94

Weight (kDa)

9.65

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	51 - 100	4.3e-17	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013725)

Species	Orthologous Gene IDs
malus_domestica	MD04G1109800.v1.1 MD10G1043800.v1.1 MD12G1143800.v1.1 MD13G1249600.v1.1 MD15G1297700.v1.1 MD17G1274500.v1.1
pyrus_communis	pycom03g05430
rosa_laevigata	RLG00000006683
rosa_roxburghii	Rroxscaffold_2G00103460 Rroxscaffold_2G00125490
rosa_rugosa	Rorug02G0192900 Rorug02G0248400 Rorug03G0217800 Rorug03G0231100 Rorug05G0259200 Rorug05G0362400
rosa_samantha	Rh7BG038900
rosa_wichuraiana	Rw6G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	3 cut(s)	58, 121, 162
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	280, 290
AcuI	CTGAAG	2 cut(s)	47, 63
AfeI	AGCGCT	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	150, 310
AgsI	TTSAA	1 cut(s)	221
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw21I	GWGCWC	2 cut(s)	25, 189
Alw26I	GTCTC	2 cut(s)	290, 369
AlwI	GGATC	3 cut(s)	58, 121, 162
Aor51HI	AGCGCT	1 cut(s)	398
AoxI	GGCC	2 cut(s)	71, 301
ApoI	RAATTY	2 cut(s)	280, 290
AspLEI	GCGC	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	2 cut(s)	186, 310
Bbv12I	GWGCWC	2 cut(s)	25, 189
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BcoDI	GTCTC	2 cut(s)	290, 369
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	1 cut(s)	400
BmsI	GCATC	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	186, 310
BsaBI	GATNNNNATC	2 cut(s)	62, 125
BsaJI	CCNNGG	2 cut(s)	130, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 310
Bse1I	ACTGG	1 cut(s)	304
Bse8I	GATNNNNATC	2 cut(s)	62, 125
BseDI	CCNNGG	2 cut(s)	130, 332
BseGI	GGATG	2 cut(s)	63, 126
BseJI	GATNNNNATC	2 cut(s)	62, 125
BseLI	CCNNNNNNNGG	2 cut(s)	150, 310
BseNI	ACTGG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	73, 303
BsiHKAI	GWGCWC	2 cut(s)	25, 189
BslI	CCNNNNNNNGG	2 cut(s)	150, 310
BsmAI	GTCTC	2 cut(s)	290, 369
BsnI	GGCC	2 cut(s)	73, 303
Bsp1286I	GDGCHC	3 cut(s)	25, 144, 189
Bsp143I	GATC	4 cut(s)	6, 63, 126, 154
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	73, 303
BspPI	GGATC	3 cut(s)	58, 121, 162
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	130, 332
BssMI	GATC	4 cut(s)	6, 63, 126, 154
Bst4CI	ACNGT	2 cut(s)	197, 336
BstDEI	CTNAG	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	63, 126
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	4 cut(s)	9, 66, 129, 157
BstMAI	GTCTC	2 cut(s)	290, 369
BstMBI	GATC	4 cut(s)	6, 63, 126, 154
BstNSI	RCATGY	2 cut(s)	168, 382
BstSFI	CTRYAG	1 cut(s)	193
BstV2I	GAAGAC	2 cut(s)	186, 310
BstXI	CCANNNNNNTGG	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	73, 303
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	63, 126
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	23, 187, 202
CfoI	GCGC	1 cut(s)	399
CviAII	CATG	4 cut(s)	93, 165, 206, 379
CviJI	RGCY	5 cut(s)	73, 80, 142, 303, 449
CviKI_1	RGCY	5 cut(s)	73, 80, 142, 303, 449
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	4 cut(s)	8, 65, 128, 156
DpnII	GATC	4 cut(s)	6, 63, 126, 154
EaeI	YGGCCR	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	144
Eco47III	AGCGCT	1 cut(s)	398
Eco57I	CTGAAG	2 cut(s)	47, 63
EcoRI	GAATTC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	4 cut(s)	96, 168, 209, 382
FaiI	YATR	6 cut(s)	94, 159, 166, 207, 234, 380
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	4 cut(s)	92, 164, 205, 378
FokI	GGATG	2 cut(s)	70, 133
FriOI	GRGCYC	1 cut(s)	144
GlaI	GCGC	1 cut(s)	398
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	2 cut(s)	73, 303
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	4 cut(s)	96, 168, 209, 382
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	412
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	6 cut(s)	11, 68, 111, 131, 348, 411
Hpy188III	TCNNGA	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	6, 63, 215
HpyCH4III	ACNGT	2 cut(s)	197, 336
HpyCH4V	TGCA	2 cut(s)	243, 437
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	96, 168, 209, 382
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	6, 63, 126, 154
LpnPI	CCDG	5 cut(s)	102, 182, 282, 285, 423
LweI	GCATC	1 cut(s)	363
MaeIII	GTNAC	4 cut(s)	37, 46, 99, 197
MalI	GATC	4 cut(s)	8, 65, 128, 156
MboI	GATC	4 cut(s)	6, 63, 126, 154
MboII	GAAGA	2 cut(s)	191, 310
MhlI	GDGCHC	3 cut(s)	25, 144, 189
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	2 cut(s)	280, 290
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	3 cut(s)	125, 307, 439
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MslI	CAYNNNNRTG	2 cut(s)	119, 359
Msp20I	TGGCCA	1 cut(s)	303
NdeII	GATC	4 cut(s)	6, 63, 126, 154
NlaIII	CATG	4 cut(s)	96, 168, 209, 382
NmeAIII	GCCGAG	2 cut(s)	99, 399
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	2 cut(s)	168, 382
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	119, 359
Sau3AI	GATC	4 cut(s)	6, 63, 126, 154
SchI	GAGTC	1 cut(s)	406
SduI	GDGCHC	3 cut(s)	25, 144, 189
SetI	ASST	3 cut(s)	82, 226, 318
SfaNI	GCATC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	119, 359
Sse9I	AATT	2 cut(s)	280, 290
SsiI	CCGC	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	197, 336
TasI	AATT	2 cut(s)	280, 290
TscAI	CASTG	3 cut(s)	30, 194, 202
TseFI	GTSAC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	3 cut(s)	30, 194, 202
XapI	RAATTY	2 cut(s)	280, 290
XceI	RCATGY	2 cut(s)	168, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.