Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013725

Physical Location & Seq

Genomic Coordinates Forward (+)

9640845 .. 9643320

Gene Structure 2476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTCATCCTTGGCACCCAGTATGCTGGTGAAATGAGGAAAGGCCTGTTTAGTGTAATGCACTATCTCATGCCTAGGCGTCGAATCCTCTCCCTACTTTCTGGCTGCAATATGGGGAATGGCGATGTTGCCCTTTTCTTTGGCTTATCAGAAACTGGGAAGACAACTCTGTCTACAGATCATAATAGGTACTTAATTGGAGATGATGAGCACTGCTGGAGTGACAATGGTGTTGAAGGTGGTTGCTATGCTAAGTGCATTGATTTGGCGAAAGACAAAGAACCAGATGTTTGGAATTCTATCAAATTTGGGACTGTTAAAAAGATGATACTATGGACCATTGTTCTTTTGGAGAATATTGTGTTTGATGAGCATACTCGAGAAGTGGATTATTCAGAGAAATCTGTCGCAGGATCACCGGTTGATGTTGATCTTCATTACTTTACTACACTGGAACTCGCTAAGTTGACAGCAGATTTTTTCTGCTACGCTGGTACATTAGAGAGGACCATGTGTGCATTATTGGTAATGGTTTCGCAGACTTTCATGGCTCTGTATTTCACTATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

191

Amino Acids

21.41

Weight (kDa)

5.07

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	1 - 136	1.9e-54	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013725)

Species	Orthologous Gene IDs
malus_domestica	MD04G1109800.v1.1 MD10G1043800.v1.1 MD12G1143800.v1.1 MD13G1249600.v1.1 MD15G1297700.v1.1 MD17G1274500.v1.1
pyrus_communis	pycom03g05430
rosa_laevigata	RLG00000006683
rosa_roxburghii	Rroxscaffold_2G00103460 Rroxscaffold_2G00125490
rosa_rugosa	Rorug02G0192900 Rorug02G0248400 Rorug03G0217800 Rorug03G0231100 Rorug05G0259200 Rorug05G0362400
rosa_samantha	Rh7BG038900
rosa_wichuraiana	Rw6G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	295, 305
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	2 cut(s)	191, 496
AgeI	ACCGGT	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	236
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	421
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	295, 305
AsiGI	ACCGGT	1 cut(s)	418
AspA2I	CCTAGG	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	336, 507
AsuHPI	GGTGA	2 cut(s)	41, 408
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	2 cut(s)	336, 507
AvrII	CCTAGG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	106
BlnI	CCTAGG	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	107
Bme18I	GGWCC	2 cut(s)	336, 507
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	2 cut(s)	336, 507
BmiI	GGNNCC	1 cut(s)	16
BmrI	ACTGGG	2 cut(s)	13, 165
BmuI	ACTGGG	2 cut(s)	13, 165
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	10, 74
BsaWI	WCCGGW	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	3 cut(s)	19, 160, 456
Bse8I	GATNNNNATC	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	10, 74
BseGI	GGATG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	429
BseNI	ACTGG	3 cut(s)	19, 160, 456
BseXI	GCAGC	1 cut(s)	92
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	178, 413, 430
BspANI	GGCC	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	3 cut(s)	19, 160, 456
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	10, 74
BssMI	GATC	3 cut(s)	178, 413, 430
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	2 cut(s)	10, 74
Bst4CI	ACNGT	1 cut(s)	316
BstACI	GRCGYC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	252, 462
BstF5I	GGATG	1 cut(s)	6
BstKTI	GATC	3 cut(s)	181, 416, 433
BstMBI	GATC	3 cut(s)	178, 413, 430
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	167
BstXI	CCANNNNNNTGG	2 cut(s)	26, 291
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	211, 449
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	2 cut(s)	336, 507
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	190, 495
CspAI	ACCGGT	1 cut(s)	418
CviAII	CATG	3 cut(s)	70, 511, 547
CviJI	RGCY	4 cut(s)	45, 105, 144, 551
CviKI_1	RGCY	4 cut(s)	45, 105, 144, 551
CviQI	GTAC	2 cut(s)	190, 495
DdeI	CTNAG	2 cut(s)	252, 462
DpnI	GATC	3 cut(s)	180, 415, 432
DpnII	GATC	3 cut(s)	178, 413, 430
DrdI	GACNNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	10, 74
Eco147I	AGGCCT	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	336, 507
Eco88I	CYCGRG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	10, 74
ErhI	CCWWGG	2 cut(s)	10, 74
FaeI	CATG	3 cut(s)	73, 514, 550
FaiI	YATR	9 cut(s)	24, 71, 113, 183, 249, 334, 375, 512, 548
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	69, 510, 546
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	73, 514, 550
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	2 cut(s)	41, 408
Hpy166II	GTNNAC	2 cut(s)	174, 468
Hpy188I	TCNGA	2 cut(s)	151, 397
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	2 cut(s)	174, 468
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	4 cut(s)	61, 108, 258, 518
HpyF3I	CTNAG	2 cut(s)	252, 462
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	73, 514, 550
Kzo9I	GATC	3 cut(s)	178, 413, 430
Lsp1109I	GCAGC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	180, 415, 432
MboI	GATC	3 cut(s)	178, 413, 430
MboII	GAAGA	2 cut(s)	172, 425
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	3 cut(s)	195, 295, 305
MnlI	CCTC	3 cut(s)	30, 98, 498
MseI	TTAA	2 cut(s)	194, 318
MspI	CCGG	1 cut(s)	419
NdeII	GATC	3 cut(s)	178, 413, 430
NlaIII	CATG	3 cut(s)	73, 514, 550
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	336, 507
PstNI	CAGNNNCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	191, 496
RsaNI	GTAC	2 cut(s)	190, 495
SaqAI	TTAA	2 cut(s)	194, 318
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	3 cut(s)	178, 413, 430
Sau96I	GGNCC	2 cut(s)	336, 507
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	2 cut(s)	191, 241
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	378
SinI	GGWCC	2 cut(s)	336, 507
SlaI	CTCGAG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	3 cut(s)	195, 295, 305
SseBI	AGGCCT	1 cut(s)	45
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	10, 74
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	82, 379
TasI	AATT	3 cut(s)	195, 295, 305
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	2 cut(s)	194, 318
Tru9I	TTAA	2 cut(s)	194, 318
TscAI	CASTG	2 cut(s)	218, 456
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	425, 535
TspRI	CASTG	2 cut(s)	218, 456
VpaK11BI	GGWCC	2 cut(s)	336, 507
XapI	RAATTY	2 cut(s)	295, 305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	378
XmaJI	CCTAGG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	173
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.