Rorug03G0231100

HVA22-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
21311068 .. 21311415
348 bp
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UTR
Exon/CDS
Intron
Rorug03G0231100.1

Sequence Viewer

Length: 204 bp
ATGAAGGCTAATGAAGATGATGGTAATCTAGTATTTTCGTACACTCCCCTGTACACAACAGAGACTATTGGGATGGATGTTTATTACAGAGATACAATAACAACCATCATCAAAGGTGAAATCCCATCATCCGTTGGGAACATGAGAAGCATGGAGTCCTTAGACCTCTCACAAAATCGTCTGAGCGGCCACATTCCCCAATAA

Protein Analysis

67

Amino Acids

7.52

Weight (kDa)

4.56

Isoelectric Point (pI)

29.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 186
AciI CCGC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 187
AfaI GTAC 2 cut(s) 41, 53
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 128
BccI CCATC 4 cut(s) 14, 67, 113, 133
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 24
BseGI GGATG 3 cut(s) 78, 82, 128
BseJI GATNNNNATC 1 cut(s) 24
BseMII CTCAG 1 cut(s) 173
BshFI GGCC 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 189
Bsp1407I TGTACA 1 cut(s) 51
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 160, 182
BstF5I GGATG 3 cut(s) 78, 82, 128
BstMAI GTCTC 1 cut(s) 56
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 78, 82, 128
Csp6I GTAC 2 cut(s) 40, 52
CviAII CATG 2 cut(s) 142, 151
CviJI RGCY 2 cut(s) 8, 189
CviKI_1 RGCY 2 cut(s) 8, 189
CviQI GTAC 2 cut(s) 40, 52
DdeI CTNAG 2 cut(s) 160, 182
EaeI YGGCCR 1 cut(s) 187
FaeI CATG 2 cut(s) 145, 154
FaiI YATR 2 cut(s) 143, 152
FatI CATG 2 cut(s) 141, 150
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 3 cut(s) 85, 89, 115
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 2 cut(s) 145, 154
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 42, 54
Hpy188I TCNGA 1 cut(s) 183
Hpy8I GTNNAC 2 cut(s) 42, 54
HpyF3I CTNAG 2 cut(s) 160, 182
Hsp92II CATG 2 cut(s) 145, 154
LpnPI CCDG 1 cut(s) 62
MaeI CTAG 1 cut(s) 29
MbiI CCGCTC 1 cut(s) 186
MboII GAAGA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 1 cut(s) 176
NlaIII CATG 2 cut(s) 145, 154
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
RsaI GTAC 2 cut(s) 41, 53
RsaNI GTAC 2 cut(s) 40, 52
SatI GCNGC 1 cut(s) 187
SchI GAGTC 1 cut(s) 164
SetI ASST 2 cut(s) 118, 168
SgeI CNNG 4 cut(s) 41, 61, 154, 163
SsiI CCGC 1 cut(s) 186
SspMI CTAG 1 cut(s) 29
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 17, 27
TspGWI ACGGA 1 cut(s) 121
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.