Rw6G018140

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013725
Physical Location & Seq
Forward (+)
35928152 .. 35931547
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018140.1

Sequence Viewer

Length: 363 bp
ATGGGATCTGGTGCTGGAAGTTTCCTCAAAGTTCTCCTTAAAAACTTCGATGTTCTTGCTGGGTATGCCTCAATTCGGGTTATAGAGACCAAATCCCCAACTGATGATCGTCAATGGCTTACGTATTGGATTCTCTACTTTATGATTACACTCTTTGAGCTCACTTTTGCCAAACTTATTGAGTGGAAACCACTTGGGAATTTTAAAAATTTAGCTGCTTGTTCTATCATATTGTGGAGTGCTTTTACATTCTTCTTGTCTAATAATGTACATAAATATGATATTTATTGGTTCAGATCCGCTTTCTTTTGGCTATCAAATCAAAATGGGACATCGATTTACAATTTGGGAAACGATGTCTAA

Protein Analysis

120

Amino Acids

13.95

Weight (kDa)

8.73

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 21 - 65 2.9e-11 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 300
AclWI GGATC 2 cut(s) 13, 291
AcsI RAATTY 2 cut(s) 199, 208
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 160, 215
AluI AGCT 2 cut(s) 160, 215
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 13, 291
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 199, 208
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcoDI GTCTC 1 cut(s) 80
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bsa29I ATCGAT 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 343
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 268
Bsp143I GATC 3 cut(s) 5, 106, 296
BspACI CCGC 1 cut(s) 300
BspDI ATCGAT 1 cut(s) 335
BspPI GGATC 2 cut(s) 13, 291
BspTNI GGTCTC 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 268
BssMI GATC 3 cut(s) 5, 106, 296
BstAUI TGTACA 1 cut(s) 268
BstBAI YACGTR 1 cut(s) 123
BstKTI GATC 3 cut(s) 8, 109, 299
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 5, 106, 296
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 2 cut(s) 5, 296
BstYI RGATCY 2 cut(s) 5, 296
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
ClaI ATCGAT 1 cut(s) 335
Csp6I GTAC 1 cut(s) 269
CviJI RGCY 4 cut(s) 118, 160, 215, 313
CviKI_1 RGCY 4 cut(s) 118, 160, 215, 313
CviQI GTAC 1 cut(s) 269
DpnI GATC 3 cut(s) 7, 108, 298
DpnII GATC 3 cut(s) 5, 106, 296
DraI TTTAAA 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 160
Eco105I TACGTA 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 162
FaiI YATR 6 cut(s) 66, 83, 143, 230, 273, 279
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 122
Kzo9I GATC 3 cut(s) 5, 106, 296
LpnPI CCDG 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 202
MaeII ACGT 1 cut(s) 122
MalI GATC 3 cut(s) 7, 108, 298
MboI GATC 3 cut(s) 5, 106, 296
MboII GAAGA 1 cut(s) 244
MflI RGATCY 2 cut(s) 5, 296
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 4 cut(s) 72, 199, 208, 343
MnlI CCTC 2 cut(s) 35, 79
MseI TTAA 2 cut(s) 39, 204
MslI CAYNNNNRTG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 3 cut(s) 5, 106, 296
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 59
PsuI RGATCY 2 cut(s) 5, 296
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 39, 204
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 5, 106, 296
SduI GDGCHC 1 cut(s) 162
SetI ASST 3 cut(s) 125, 162, 217
SgeI CNNG 8 cut(s) 21, 27, 68, 72, 89, 206, 231, 268
SmiMI CAYNNNNRTG 1 cut(s) 276
SnaBI TACGTA 1 cut(s) 123
Sse9I AATT 4 cut(s) 72, 199, 208, 343
SsiI CCGC 1 cut(s) 300
SstI GAGCTC 1 cut(s) 162
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 48, 335
TasI AATT 4 cut(s) 72, 199, 208, 343
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 2 cut(s) 39, 204
Tru9I TTAA 2 cut(s) 39, 204
TseI GCWGC 1 cut(s) 215
XapI RAATTY 2 cut(s) 199, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.