Rh7BG038900

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013725
Physical Location & Seq
Reverse (-)
2495159 .. 2496482
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG038900.1

Sequence Viewer

Length: 324 bp
ATGGGATCTGGTGCTGGAAGTTTCCTCAAAGTTCTCCTTAAAAACTTCGATGTTCTTGCTGGGCCTGTGGTTAGTTTGGTTTACCCACTGTATGCCTCAATTCGGGCTATAGAGACCAAATCTCCAACTGATGACCGCCAATGGCTTACGTATTGGATTCTCTACTCTATGATTACACTCTTTGAGCTCACCTTTGCCAAACTTATTGAGTGTCTGACAAGTCCCAAAGGAGTGGAGGATTCATCTTTGATGATGATCATAAGTACTACTGAGGCTCATGCTTGCAACGCGTTTTCAATGTCATGTAGTTCCTTGGTGGAGTAA

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

4.99

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 29 - 71 1.2e-12 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 13
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 297
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 181
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 108
BmcAI AGTACT 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 312
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 189
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 5, 255
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 290
BspPI GGATC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 5, 255
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 270
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 2 cut(s) 8, 258
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 5, 255
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 108
BstSNI TACGTA 1 cut(s) 150
BstUI CGCG 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 5
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 264
CviAII CATG 2 cut(s) 278, 303
CviJI RGCY 5 cut(s) 64, 107, 145, 187, 275
CviKI_1 RGCY 5 cut(s) 64, 107, 145, 187, 275
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 7, 257
DpnII GATC 2 cut(s) 5, 255
Ecl136II GAGCTC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 2 cut(s) 281, 306
FaiI YATR 6 cut(s) 93, 110, 170, 260, 279, 304
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 1 cut(s) 207
FatI CATG 2 cut(s) 277, 302
FbaI TGATCA 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 2 cut(s) 281, 306
HinfI GANTC 2 cut(s) 157, 239
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 281, 306
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 2 cut(s) 5, 255
LpnPI CCDG 2 cut(s) 45, 78
MaeII ACGT 1 cut(s) 149
MalI GATC 2 cut(s) 7, 257
MboI GATC 2 cut(s) 5, 255
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 99
MluI ACGCGT 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 35, 106, 229, 265
MseI TTAA 1 cut(s) 39
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 2 cut(s) 5, 255
NlaIII CATG 2 cut(s) 281, 306
PfeI GAWTC 2 cut(s) 157, 239
Ppu21I YACGTR 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 2 cut(s) 5, 255
Sau96I GGNCC 1 cut(s) 62
ScaI AGTACT 1 cut(s) 265
SduI GDGCHC 1 cut(s) 189
SetI ASST 3 cut(s) 152, 189, 194
SfcI CTRYAG 1 cut(s) 108
SnaBI TACGTA 1 cut(s) 150
Sse9I AATT 1 cut(s) 99
SsiI CCGC 1 cut(s) 136
SstI GAGCTC 1 cut(s) 189
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 99
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 2 cut(s) 157, 239
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.