Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Reverse (-)

40011740 .. 40013059

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1281000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGACTAGAAATAAGGTCAAGCTTGCATGGATAGTGAATGATAATGCTAGAAAATCTAGCTTTAAAAAGAGAAATGCATGCTTGGTGAAGAAAATGAGTGAACTAACCACCTTATGCGACATCAGTGCCTTTGTCATTGTTTATGGCGAAGACGGTGAGGAGTCAACTGTGTGGCCGGATCGCATGGTGGTGGAACAATTGATTGCAAGGTTTCAAAACATAGCAGATCTCGAGCGGTGGAAGAAAATGATGAACCAAGAGACTTACCTGAAGGACAGGGCAACCAAAATGCAAGAGCAAATCAGAAAGATTATGAAAAAGAACAATGAGCTGAACACAAGTAATGTCTTGCGCCAAATTATTCAAAACGGTAAGCCCCTGCTTGAATTTGATGATAATGTTCTAACTGGCGTGGTTTTTTCTTTAGAGGAGAGGATGAAAGAAATCCGAAAACGTATCGATTATTTTGAGCAGGCGAATCCTAATCATTCTCCAAGTACTCCTTCACAATGGGGTGGAGATCAGTCTGAAATGATAAGCCAAATTGGAAGTGATTTTCCCGAGTCTTTGTTTATGTACAAAGACCTGGGAAAGCAAATTCAAAACAATTATGGTCCTACTGTTAGTGTTAGGAGTGACATCGCGATACCACCAATCTCGCTCTTTGGTAATTTTACTATTGCAAATGACATGGGGATGCCTCTTTGGAACTTGGGAGGCAATTGTGATGGAAGTGATTTAGGGTTGCCTAAGAAAATAAGGCGTGTTGAAGGTCCTGGAAGTGGCGTTGGGGATGACATGGGGGTCCATAGTGGATTCTTCAAATATCAAAACTATGTTGGAAGTGACAACAAATATGGAAATTATAAGGAGAGTCGTCCTTTTTGGGACTGGGGAGTCGGTGGGGATGGAAGCGATAAAGGGTTGACTTCGATGAATTCTGAAGGCATGGATGGTGGAACTGGGATGGAGCTAGAGGTTTTTCCTAGTTATGCGACTAAAGTTGCAGGTATTACTAGTAATGTGGGATGTGATCTAGGGCTCGATATGACGTCTTACAATGAGGATACTGGATTTCGTATTGGGGACGACAAGGCTGGATCAAACAATGGAGTATTTGGGCATTTGCCACGTCAATTCAACATTGGAGTCCGTACGGAAAGTCATAGAGATCTGCCTTCTGCATGTTTTGGAGGTAATGGTGCTGGAAGTGATGTAAGGCTATTTCCAGGACTATTTGCCGGTAGCAACGCTGGGAGTGATGTTGGGCATCCTTACAATGTTAGCAAAAGCTGGCAGTTTCCCTTCTCTTCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

440

Amino Acids

48.65

Weight (kDa)

5.72

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 53	4.4e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	867
AasI	GACNNNNNNGTC	2 cut(s)	803, 896
AatII	GACGTC	1 cut(s)	1055
Acc36I	ACCTGC	1 cut(s)	998
AccBSI	CCGCTC	1 cut(s)	235
AccII	CGCG	1 cut(s)	644
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	2 cut(s)	186, 1108
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	3 cut(s)	386, 597, 937
AcuI	CTGAAG	2 cut(s)	290, 963
AcyI	GRCGYC	1 cut(s)	1052
AfaI	GTAC	3 cut(s)	499, 578, 1156
AfiI	CCNNNNNNNGG	1 cut(s)	782
AgsI	TTSAA	7 cut(s)	215, 365, 386, 602, 770, 823, 1141
AhlI	ACTAGT	1 cut(s)	1016
AjiI	CACGTC	1 cut(s)	1133
AjnI	CCWGG	3 cut(s)	585, 775, 1228
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AluBI	AGCT	5 cut(s)	22, 60, 331, 973, 1293
AluI	AGCT	5 cut(s)	22, 60, 331, 973, 1293
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	186, 1108
Ama87I	CYCGRG	2 cut(s)	230, 560
AoxI	GGCC	1 cut(s)	173
ApoI	RAATTY	3 cut(s)	386, 597, 937
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	3 cut(s)	614, 773, 805
AsuHPI	GGTGA	3 cut(s)	97, 167, 1305
AvaI	CYCGRG	2 cut(s)	230, 560
AvaII	GGWCC	3 cut(s)	614, 773, 805
BanII	GRGCYC	1 cut(s)	1044
BbsI	GAAGAC	1 cut(s)	156
BccI	CCATC	4 cut(s)	722, 902, 947, 961
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	3 cut(s)	587, 777, 1230
BciVI	GTATCC	1 cut(s)	1060
BcoDI	GTCTC	1 cut(s)	254
BcuI	ACTAGT	1 cut(s)	1016
BfaI	CTAG	7 cut(s)	6, 48, 57, 974, 987, 1017, 1037
BfuAI	ACCTGC	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	1060
BglII	AGATCT	2 cut(s)	226, 1171
BmcAI	AGTACT	1 cut(s)	499
Bme1390I	CCNGG	3 cut(s)	587, 777, 1230
Bme18I	GGWCC	3 cut(s)	614, 773, 805
BmeT110I	CYCGRG	2 cut(s)	230, 560
BmgBI	CACGTC	1 cut(s)	1133
BmgT120I	GGNCC	3 cut(s)	614, 773, 805
BmiI	GGNNCC	1 cut(s)	806
BmrFI	CCNGG	3 cut(s)	587, 777, 1230
BmrI	ACTGGG	2 cut(s)	901, 972
BmsI	GCATC	2 cut(s)	687, 1279
BmuI	ACTGGG	2 cut(s)	901, 972
BpiI	GAAGAC	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	1052
BsaJI	CCNNGG	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse118I	RCCGGY	1 cut(s)	1241
Bse1I	ACTGG	4 cut(s)	412, 896, 967, 1075
BseBI	CCWGG	3 cut(s)	587, 777, 1230
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	8 cut(s)	441, 702, 799, 913, 958, 972, 1034, 1270
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseNI	ACTGG	4 cut(s)	412, 896, 967, 1075
BseRI	GAGGAG	2 cut(s)	173, 443
BseYI	CCCAGC	1 cut(s)	1253
Bsh1236I	CGCG	1 cut(s)	644
BshFI	GGCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	459
BsiHKCI	CYCGRG	2 cut(s)	230, 560
BsiSI	CCGG	2 cut(s)	176, 1242
BsiWI	CGTACG	1 cut(s)	1154
BslFI	GGGAC	2 cut(s)	902, 1100
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	902, 1100
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	2 cut(s)	230, 560
Bsp1286I	GDGCHC	1 cut(s)	1044
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	6 cut(s)	178, 226, 520, 1033, 1100, 1171
Bsp68I	TCGCGA	1 cut(s)	644
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	644
BspLI	GGNNCC	1 cut(s)	806
BspMI	ACCTGC	1 cut(s)	998
BspPI	GGATC	2 cut(s)	186, 1108
BsrBI	CCGCTC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	1241
BsrGI	TGTACA	1 cut(s)	576
BsrI	ACTGG	4 cut(s)	412, 896, 967, 1075
BssAI	RCCGGY	1 cut(s)	1241
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	6 cut(s)	178, 226, 520, 1033, 1100, 1171
BssNI	GRCGYC	1 cut(s)	1052
Bst2UI	CCWGG	3 cut(s)	587, 777, 1230
Bst4CI	ACNGT	4 cut(s)	155, 169, 371, 622
Bst6I	CTCTTC	1 cut(s)	1315
BstACI	GRCGYC	1 cut(s)	1052
BstAUI	TGTACA	1 cut(s)	576
BstC8I	GCNNGC	4 cut(s)	24, 79, 474, 1295
BstDEI	CTNAG	1 cut(s)	750
BstF5I	GGATG	8 cut(s)	441, 702, 799, 913, 958, 972, 1034, 1270
BstFNI	CGCG	1 cut(s)	644
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	6 cut(s)	181, 229, 523, 1036, 1103, 1174
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	6 cut(s)	178, 226, 520, 1033, 1100, 1171
BstNI	CCWGG	3 cut(s)	587, 777, 1230
BstNSI	RCATGY	2 cut(s)	81, 1188
BstSCI	CCNGG	3 cut(s)	585, 775, 1228
BstUI	CGCG	1 cut(s)	644
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	226, 1171
BstYI	RGATCY	2 cut(s)	226, 1171
Bsu15I	ATCGAT	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	1060
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	625
BtrI	CACGTC	1 cut(s)	1133
BtsCI	GGATG	8 cut(s)	441, 702, 799, 913, 958, 972, 1034, 1270
BtsIMutI	CAGTG	1 cut(s)	130
BtuMI	TCGCGA	1 cut(s)	644
BveI	ACCTGC	1 cut(s)	998
Cac8I	GCNNGC	4 cut(s)	24, 79, 474, 1295
CfoI	GCGC	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	1241
Cfr13I	GGNCC	3 cut(s)	614, 773, 805
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	498, 577, 1155
CviAII	CATG	7 cut(s)	27, 78, 184, 691, 799, 949, 1185
CviQI	GTAC	3 cut(s)	498, 577, 1155
DdeI	CTNAG	1 cut(s)	750
DpnI	GATC	6 cut(s)	180, 228, 522, 1035, 1102, 1173
DpnII	GATC	6 cut(s)	178, 226, 520, 1033, 1100, 1171
DraI	TTTAAA	1 cut(s)	64
DrdI	GACNNNNNNGTC	2 cut(s)	803, 896
DseDI	GACNNNNNNGTC	2 cut(s)	803, 896
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	1315
EarI	CTCTTC	1 cut(s)	1315
Eco24I	GRGCYC	1 cut(s)	1044
Eco47I	GGWCC	3 cut(s)	614, 773, 805
Eco57I	CTGAAG	2 cut(s)	290, 963
Eco88I	CYCGRG	2 cut(s)	230, 560
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRI	GAATTC	1 cut(s)	937
EcoRII	CCWGG	3 cut(s)	585, 775, 1228
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	1044
FaeI	CATG	7 cut(s)	30, 81, 187, 694, 802, 952, 1188
FalI	AAGNNNNNCTT	2 cut(s)	487, 519
FaqI	GGGAC	2 cut(s)	902, 1100
FatI	CATG	7 cut(s)	26, 77, 183, 690, 798, 948, 1184
FokI	GGATG	8 cut(s)	448, 709, 806, 920, 965, 979, 1041, 1257
FriOI	GRGCYC	1 cut(s)	1044
FspBI	CTAG	7 cut(s)	6, 48, 57, 974, 987, 1017, 1037
GlaI	GCGC	1 cut(s)	353
GsaI	CCCAGC	1 cut(s)	1257
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	176, 1242
HhaI	GCGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	1052
Hin1II	CATG	7 cut(s)	30, 81, 187, 694, 802, 952, 1188
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	2 cut(s)	165, 927
HindII	GTYRAC	2 cut(s)	165, 927
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	7 cut(s)	161, 478, 563, 816, 874, 897, 1149
HpaII	CCGG	2 cut(s)	176, 1242
HphI	GGTGA	3 cut(s)	97, 167, 1305
Hpy166II	GTNNAC	3 cut(s)	101, 165, 927
Hpy188I	TCNGA	4 cut(s)	305, 449, 529, 943
Hpy188III	TCNNGA	3 cut(s)	230, 560, 643
Hpy8I	GTNNAC	3 cut(s)	101, 165, 927
HpyAV	CCTTC	6 cut(s)	265, 513, 764, 938, 1188, 1315
HpyCH4III	ACNGT	4 cut(s)	155, 169, 371, 622
HpyCH4IV	ACGT	3 cut(s)	454, 1052, 1132
HpyCH4V	TGCA	7 cut(s)	26, 77, 206, 292, 683, 1007, 1184
HpyF3I	CTNAG	1 cut(s)	750
HpySE526I	ACGT	3 cut(s)	454, 1052, 1132
Hsp92I	GRCGYC	1 cut(s)	1052
Hsp92II	CATG	7 cut(s)	30, 81, 187, 694, 802, 952, 1188
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	178, 226, 520, 1033, 1100, 1171
LmnI	GCTCC	1 cut(s)	970
LweI	GCATC	2 cut(s)	687, 1279
MaeI	CTAG	7 cut(s)	6, 48, 57, 974, 987, 1017, 1037
MaeII	ACGT	3 cut(s)	454, 1052, 1132
MaeIII	GTNAC	2 cut(s)	635, 845
MalI	GATC	6 cut(s)	180, 228, 522, 1035, 1102, 1173
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	6 cut(s)	178, 226, 520, 1033, 1100, 1171
MboII	GAAGA	5 cut(s)	100, 161, 253, 811, 1302
MfeI	CAATTG	2 cut(s)	197, 721
MflI	RGATCY	2 cut(s)	226, 1171
MhlI	GDGCHC	1 cut(s)	1044
MlyI	GAGTC	5 cut(s)	170, 572, 883, 906, 1158
MmeI	TCCRAC	1 cut(s)	820
MnlI	CCTC	8 cut(s)	151, 421, 426, 710, 711, 970, 1057, 1187
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	2 cut(s)	188, 695
MspI	CCGG	2 cut(s)	176, 1242
MspR9I	CCNGG	3 cut(s)	587, 777, 1230
MunI	CAATTG	2 cut(s)	197, 721
MvaI	CCWGG	3 cut(s)	587, 777, 1230
MvnI	CGCG	1 cut(s)	644
NdeII	GATC	6 cut(s)	178, 226, 520, 1033, 1100, 1171
NlaIII	CATG	7 cut(s)	30, 81, 187, 694, 802, 952, 1188
NlaIV	GGNNCC	1 cut(s)	806
NmuCI	GTSAC	2 cut(s)	635, 845
NruI	TCGCGA	1 cut(s)	644
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	2 cut(s)	81, 1188
PaeI	GCATGC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	478, 816
Pfl23II	CGTACG	1 cut(s)	1154
PfoI	TCCNGGA	2 cut(s)	775, 1228
PleI	GAGTC	5 cut(s)	169, 571, 882, 905, 1157
PpsI	GAGTC	5 cut(s)	169, 571, 882, 905, 1157
PpuMI	RGGWCCY	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	867
Psp5II	RGGWCCY	1 cut(s)	773
Psp6I	CCWGG	3 cut(s)	585, 775, 1228
PspFI	CCCAGC	1 cut(s)	1253
PspGI	CCWGG	3 cut(s)	585, 775, 1228
PspLI	CGTACG	1 cut(s)	1154
PspN4I	GGNNCC	1 cut(s)	806
PspPI	GGNCC	3 cut(s)	614, 773, 805
PspPPI	RGGWCCY	1 cut(s)	773
PsuI	RGATCY	2 cut(s)	226, 1171
RruI	TCGCGA	1 cut(s)	644
RsaI	GTAC	3 cut(s)	499, 578, 1156
RsaNI	GTAC	3 cut(s)	498, 577, 1155
RseI	CAYNNNNRTG	2 cut(s)	188, 695
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	6 cut(s)	178, 226, 520, 1033, 1100, 1171
Sau96I	GGNCC	3 cut(s)	614, 773, 805
ScaI	AGTACT	1 cut(s)	499
SchI	GAGTC	5 cut(s)	170, 572, 883, 906, 1158
ScrFI	CCNGG	3 cut(s)	587, 777, 1230
SduI	GDGCHC	1 cut(s)	1044
SfaNI	GCATC	2 cut(s)	687, 1279
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	3 cut(s)	614, 773, 805
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	188, 695
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SpeI	ACTAGT	1 cut(s)	1016
SphI	GCATGC	1 cut(s)	81
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	7 cut(s)	6, 48, 57, 974, 987, 1017, 1037
StyD4I	CCNGG	3 cut(s)	585, 775, 1228
TaaI	ACNGT	4 cut(s)	155, 169, 371, 622
TaiI	ACGT	3 cut(s)	457, 1055, 1135
TaqI	TCGA	4 cut(s)	231, 459, 932, 1044
TatI	WGTACW	2 cut(s)	497, 576
TfiI	GAWTC	2 cut(s)	478, 816
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	635, 845
Tsp45I	GTSAC	2 cut(s)	635, 845
TspDTI	ATGAA	4 cut(s)	266, 329, 452, 950
TspGWI	ACGGA	2 cut(s)	1142, 1172
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	3 cut(s)	614, 773, 805
XapI	RAATTY	3 cut(s)	386, 597, 937
XceI	RCATGY	2 cut(s)	81, 1188
XhoI	CTCGAG	1 cut(s)	230
XspI	CTAG	7 cut(s)	6, 48, 57, 974, 987, 1017, 1037
ZraI	GACGTC	1 cut(s)	1053
ZrmI	AGTACT	1 cut(s)	499
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.