Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Reverse (-)

64057542 .. 64058522

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG476700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGACTCGATCAAAGGTGAAACTTGCATGGATACAAAAGAAGAGTTCTCGAAAATCCACCTTCAAAAATAGGAGCGAAGGCTTGTTGATGAAAGTGGAGCAACTCTGCATTCTATGCGATTTGCATGCGCTCGTCATCATATACAACCCAGATACTGAAGAATTGACTGTATGGCCTAACCACCAAGAAGTGGAACAACTTCTCAGACGGTTCATGAGACTTCCTGATTTCACACGAAGACGGAAAATGAAGGACCAAGAGAGTCACATGGAGGAGAGAGTGGCCCATATGCAAGTGGAACAGACGAGGGTACTCAAGAAGAACAAAGAGATGGAACTAAACGATGTCATTGGTCAAATTGAGAGGAAAGGTAAATTTTTTCATGAGTTTAGCCACAAGGAGTTAACTGATCTGGATTCTTTCTTGAAGGAAAAGATGGATGAGATCAAGAAACTAATGGATTACCATGGTCATAATAATATTCCTCATCCAGTAGCTATTGAGGATGGAAAGTCTTATGATCACATCATGAGCCAAATCGGAAGAAATACCACTGATTCTCTATTTGGTTCTTTGAAGAGAGGAAAGAGAAAACAATCTGGGATAATGACAGAAACTTCTGGCTACAGTAGTACAATAGCTGCCAATAATATGGATCTACCCTTAGCAAGTAATGATGGCCATTGTGGAGCTGAGGGTATGGAGTGGGCAACTTTTGGAGTAGAGTCTGATGGAAATAGAAGTGAGCAAATGAGAATAAATCATTTGGGGTTTACTTCTGATATGCCTTTCCATGGTGATGATATTTATTTGGATACTGTTAGAGGCAGCAATGCTGGGTATAATGATGTTGGAGGGAATTTGCTGCATCTGCCCGAGAATGAAGGTGGTATGGAAAGTGATATGGAGGTGCCGCCTTGGTTTCTTGGAGATAACGATGCCGGAAGTGATGAAGGGCTTAAGTCTGTTTGGAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

326

Amino Acids

37.4

Weight (kDa)

5.89

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 52	1.3e-11	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	910
AccB7I	CCANNNNNTGG	1 cut(s)	190
AciI	CCGC	1 cut(s)	914
AclWI	GGATC	1 cut(s)	663
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	2 cut(s)	374, 859
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	312, 634
AfiI	CCNNNNNNNGG	2 cut(s)	190, 794
AflII	CTTAAG	1 cut(s)	959
AgsI	TTSAA	3 cut(s)	64, 427, 577
AluBI	AGCT	3 cut(s)	497, 641, 692
AluI	AGCT	3 cut(s)	497, 641, 692
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	663
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	875
AoxI	GGCC	3 cut(s)	173, 282, 679
ApeKI	GCWGC	3 cut(s)	641, 828, 865
ApoI	RAATTY	2 cut(s)	374, 859
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	253, 283
AsuHPI	GGTGA	2 cut(s)	28, 809
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	910
BbsI	GAAGAC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	3 cut(s)	628, 840, 852
BccI	CCATC	5 cut(s)	325, 430, 500, 671, 725
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciVI	GTATCC	2 cut(s)	24, 808
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	211
BfmI	CTRYAG	1 cut(s)	625
BfrI	CTTAAG	1 cut(s)	959
BfuI	GTATCC	2 cut(s)	24, 808
BisI	GCNGC	4 cut(s)	642, 829, 866, 914
BlsI	GCNGC	4 cut(s)	643, 830, 867, 915
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	2 cut(s)	253, 283
BmiI	GGNNCC	1 cut(s)	912
BmsI	GCATC	2 cut(s)	877, 928
BpiI	GAAGAC	1 cut(s)	244
Bpu10I	CCTNAGC	2 cut(s)	664, 693
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	466, 793, 917
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 794
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	838
BseDI	CCNNGG	3 cut(s)	466, 793, 917
BseGI	GGATG	3 cut(s)	445, 487, 511
BseLI	CCNNNNNNNGG	2 cut(s)	190, 794
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	2 cut(s)	217, 684
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	628, 840, 852
BseYI	CCCAGC	1 cut(s)	836
BshFI	GGCC	3 cut(s)	175, 284, 681
BshNI	GGYRCC	1 cut(s)	910
BsiHKCI	CYCGRG	1 cut(s)	875
BsiSI	CCGG	1 cut(s)	942
BslI	CCNNNNNNNGG	2 cut(s)	190, 794
BsmAI	GTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	3 cut(s)	175, 284, 681
BsoBI	CYCGRG	1 cut(s)	875
Bsp143I	GATC	5 cut(s)	8, 409, 444, 520, 655
Bsp19I	CCATGG	2 cut(s)	466, 793
BspACI	CCGC	1 cut(s)	914
BspANI	GGCC	3 cut(s)	175, 284, 681
BspCNI	CTCAG	2 cut(s)	216, 685
BspHI	TCATGA	3 cut(s)	213, 382, 528
BspLI	GGNNCC	1 cut(s)	912
BspPI	GGATC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	910
BspTI	CTTAAG	1 cut(s)	959
BsrDI	GCAATG	1 cut(s)	838
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	3 cut(s)	466, 793, 917
BssMI	GATC	5 cut(s)	8, 409, 444, 520, 655
BssT1I	CCWWGG	3 cut(s)	466, 793, 917
Bst4CI	ACNGT	4 cut(s)	169, 210, 629, 820
Bst6I	CTCTTC	2 cut(s)	35, 572
BstAFI	CTTAAG	1 cut(s)	959
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	203, 664, 693
BstDSI	CCRYGG	2 cut(s)	466, 793
BstF5I	GGATG	3 cut(s)	445, 487, 511
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	5 cut(s)	11, 412, 447, 523, 658
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	5 cut(s)	8, 409, 444, 520, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 871
BstNSI	RCATGY	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	625
BstV1I	GCAGC	3 cut(s)	628, 840, 852
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	655
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	655
BsuI	GTATCC	2 cut(s)	24, 808
BsuRI	GGCC	3 cut(s)	175, 284, 681
BtgI	CCRYGG	2 cut(s)	466, 793
BtsCI	GGATG	3 cut(s)	445, 487, 511
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	3 cut(s)	213, 382, 528
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	253, 283
Csp6I	GTAC	2 cut(s)	311, 633
CviAII	CATG	8 cut(s)	27, 125, 214, 268, 383, 467, 529, 794
CviQI	GTAC	2 cut(s)	311, 633
DdeI	CTNAG	3 cut(s)	203, 664, 693
DpnI	GATC	5 cut(s)	10, 411, 446, 522, 657
DpnII	GATC	5 cut(s)	8, 409, 444, 520, 655
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	2 cut(s)	35, 572
EarI	CTCTTC	2 cut(s)	35, 572
Eco130I	CCWWGG	3 cut(s)	466, 793, 917
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	875
EcoT14I	CCWWGG	3 cut(s)	466, 793, 917
ErhI	CCWWGG	3 cut(s)	466, 793, 917
FaeI	CATG	8 cut(s)	30, 128, 217, 271, 386, 470, 532, 797
FatI	CATG	8 cut(s)	26, 124, 213, 267, 382, 466, 528, 793
FauNDI	CATATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	4 cut(s)	642, 829, 866, 914
FokI	GGATG	3 cut(s)	452, 474, 518
Fsp4HI	GCNGC	4 cut(s)	642, 829, 866, 914
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	4 cut(s)	642, 829, 866, 914
GsaI	CCCAGC	1 cut(s)	840
HaeIII	GGCC	3 cut(s)	175, 284, 681
HapII	CCGG	1 cut(s)	942
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	8 cut(s)	30, 128, 217, 271, 386, 470, 532, 797
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	5 cut(s)	4, 262, 416, 557, 725
HpaI	GTTAAC	1 cut(s)	405
HpaII	CCGG	1 cut(s)	942
HphI	GGTGA	2 cut(s)	28, 809
Hpy166II	GTNNAC	2 cut(s)	405, 774
Hpy188I	TCNGA	4 cut(s)	206, 542, 730, 781
Hpy188III	TCNNGA	9 cut(s)	48, 214, 224, 316, 383, 413, 424, 448, 529
Hpy8I	GTNNAC	2 cut(s)	405, 774
HpyAV	CCTTC	6 cut(s)	70, 71, 244, 421, 878, 947
HpyCH4III	ACNGT	4 cut(s)	169, 210, 629, 820
HpyCH4V	TGCA	5 cut(s)	26, 108, 124, 292, 868
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 871
HpyF3I	CTNAG	3 cut(s)	203, 664, 693
Hsp92II	CATG	8 cut(s)	30, 128, 217, 271, 386, 470, 532, 797
HspAI	GCGC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	8, 409, 444, 520, 655
LmnI	GCTCC	3 cut(s)	72, 97, 689
LpnPI	CCDG	8 cut(s)	162, 237, 398, 504, 585, 606, 822, 955
Lsp1109I	GCAGC	3 cut(s)	628, 840, 852
LweI	GCATC	2 cut(s)	877, 928
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	5 cut(s)	10, 411, 446, 522, 657
MboI	GATC	5 cut(s)	8, 409, 444, 520, 655
MboII	GAAGA	6 cut(s)	52, 170, 249, 331, 555, 589
MflI	RGATCY	1 cut(s)	655
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	4 cut(s)	161, 357, 374, 859
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	2 cut(s)	271, 734
MmeI	TCCRAC	1 cut(s)	832
Mox20I	TGGCCA	1 cut(s)	681
MroXI	GAANNNNTTC	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	2 cut(s)	404, 960
MslI	CAYNNNNRTG	1 cut(s)	798
Msp20I	TGGCCA	1 cut(s)	681
MspCI	CTTAAG	1 cut(s)	959
MspI	CCGG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	114, 871
NcoI	CCATGG	2 cut(s)	466, 793
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	5 cut(s)	8, 409, 444, 520, 655
NlaIII	CATG	8 cut(s)	30, 128, 217, 271, 386, 470, 532, 797
NlaIV	GGNNCC	1 cut(s)	912
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PagI	TCATGA	3 cut(s)	213, 382, 528
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	416, 557
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	643, 830, 867, 915
PleI	GAGTC	2 cut(s)	270, 733
PpsI	GAGTC	2 cut(s)	270, 733
PspFI	CCCAGC	1 cut(s)	836
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	2 cut(s)	253, 283
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	2 cut(s)	312, 634
RsaNI	GTAC	2 cut(s)	311, 633
RseI	CAYNNNNRTG	1 cut(s)	798
SaqAI	TTAA	2 cut(s)	404, 960
SatI	GCNGC	4 cut(s)	642, 829, 866, 914
Sau3AI	GATC	5 cut(s)	8, 409, 444, 520, 655
Sau96I	GGNCC	2 cut(s)	253, 283
SchI	GAGTC	2 cut(s)	271, 734
SetI	ASST	9 cut(s)	18, 62, 373, 499, 643, 694, 889, 912, 977
SfaNI	GCATC	2 cut(s)	877, 928
SfcI	CTRYAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	798
SmlI	CTYRAG	2 cut(s)	314, 959
SmoI	CTYRAG	2 cut(s)	314, 959
SphI	GCATGC	1 cut(s)	128
Sse9I	AATT	4 cut(s)	161, 357, 374, 859
SsiI	CCGC	1 cut(s)	914
SspI	AATATT	1 cut(s)	481
StyI	CCWWGG	3 cut(s)	466, 793, 917
TaaI	ACNGT	4 cut(s)	169, 210, 629, 820
TaqI	TCGA	2 cut(s)	7, 49
TasI	AATT	4 cut(s)	161, 357, 374, 859
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	1 cut(s)	916
TfiI	GAWTC	2 cut(s)	416, 557
Tru1I	TTAA	2 cut(s)	404, 960
Tru9I	TTAA	2 cut(s)	404, 960
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	641, 828, 865
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	6 cut(s)	104, 202, 263, 371, 897, 966
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	959
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	374, 859
XceI	RCATGY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.