Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Reverse (-)

13783223 .. 13784329

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G168900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTAGGAATAAGGTCAAACTTGCATGGATAGTGAATGATGCTGCTAGAAAATCCAGCTTTAGAATGAGGAAGGCATGCTTGTTAAAGAAAATGAGTGAGATAAACACCTTATGCGATGTTAGCGCCTTTATCATTGTTTATGGCCCTGATAGTGACGAGCCTACTGTGTGGCCGGATCGCCCACTGGTGGAACAATTGGTTGCAAGGTTTCAAAGCATACCGGAGCTCGAGCGGTGGAAGAAGATGATGAGCCAAGAGACTTACCTGAAGGATAGGGTAGCCAAAATGCAGGAGCAAATCAAGAAGATTTTTAAAAAGAACAATGAGCTGAACACAAATGAGATCTTGTACCAAAGTATTCAAAAAGGTAAGTCGTTGCTTGCATTTGAAGATAATGATCTAACTGACTTGGTTTTGTCATTAGAGGACAGGATGAAGGAGATTCAAAAACGAATCGATTATTTTGAGAAACCTAATCCTAGTCATCCAGTCAGAATTCCTCCTGAGGAAAGTGGAGACCAATCAGAAAACATGAGCCAAATTGAAGGCGATTTTACTGAGTCTTTGTTATGGTACGAAGATTTGGGGAAGCAAATTGGGAACACTAATGGCCCTACCAACAGTGTTAGAAGTGACCGAGGGGTACCTTCAACTGCATATTTTGGTAGTTTAACTCATGAAAATGAGATGGGGTTGCTCAATTGGAACTTTGGAGGCAGCAATTATGATGGAAGTGATTTAGGGTTGGCCATGCAAATTGACAACTCTGAAGGTCAAGGGAATGCTGGAAGTGATATGGGGATGTCTATGGTGAATTATGGAGGCATTACTAGTGGAATTGAGATGGGGTTTGGGATGTTCCCTTATAATTGGAATAATGTTGCAGGTAGCACCGAGGATAATGGATTGGCTACTGGCGGCAGCATGGCGGATAAAGGCAGTGCTGGGAGTCGTATAGATTTTCCTCCTAGATTTTTGGGAGGTAACAAGGATGGAAGTGATTCAGGGCTCCCTCCTGGACTATTTGGAGGTAGCATTGCTGGAAGTGTTGGGCTTCCCTATGATGTTAGCAAAAGTGGACAAAATCTATTTTCTTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

369

Amino Acids

40.53

Weight (kDa)

4.92

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
Acc36I	ACCTGC	1 cut(s)	878
Acc65I	GGTACC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	646
AccBSI	CCGCTC	1 cut(s)	235
AciI	CCGC	3 cut(s)	235, 921, 932
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	2 cut(s)	173, 750
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	2 cut(s)	290, 792
AfaI	GTAC	3 cut(s)	353, 578, 648
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	6 cut(s)	215, 365, 392, 449, 548, 654
AhlI	ACTAGT	1 cut(s)	833
AjnI	CCWGG	1 cut(s)	1018
AluBI	AGCT	3 cut(s)	60, 229, 331
AluI	AGCT	3 cut(s)	60, 229, 331
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	254, 513
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	4 cut(s)	145, 173, 613, 750
ApeKI	GCWGC	3 cut(s)	44, 720, 924
ApoI	RAATTY	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	1003
Asp718I	GGTACC	1 cut(s)	646
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	146, 614
AsuHPI	GGTGA	1 cut(s)	826
AvaI	CYCGRG	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	646
BanII	GRGCYC	2 cut(s)	231, 1014
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	31, 732, 936
BccI	CCATC	4 cut(s)	685, 725, 841, 989
BciT130I	CCWGG	1 cut(s)	1020
BcoDI	GTCTC	2 cut(s)	254, 513
BcuI	ACTAGT	1 cut(s)	833
BfaI	CTAG	5 cut(s)	6, 48, 483, 834, 972
BfoI	RGCGCY	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	878
BglII	AGATCT	1 cut(s)	345
BisI	GCNGC	4 cut(s)	45, 721, 922, 925
BlsI	GCNGC	4 cut(s)	46, 722, 923, 926
Bme1390I	CCNGG	1 cut(s)	1020
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	146, 614
BmiI	GGNNCC	2 cut(s)	648, 1013
BmrFI	CCNGG	1 cut(s)	1020
BmsI	GCATC	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	640, 897
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	3 cut(s)	192, 491, 922
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	1038
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	1020
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	640, 897
BseGI	GGATG	5 cut(s)	441, 487, 810, 864, 1000
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	2 cut(s)	498, 552
BseNI	ACTGG	3 cut(s)	192, 491, 922
BseXI	GCAGC	3 cut(s)	31, 732, 936
BseYI	CCCAGC	1 cut(s)	947
BshFI	GGCC	4 cut(s)	147, 175, 615, 752
BshNI	GGYRCC	1 cut(s)	646
BshVI	ATCGAT	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	176, 224
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	254, 513
BsmI	GAATGC	1 cut(s)	790
BsnI	GGCC	4 cut(s)	147, 175, 615, 752
Bso31I	GGTCTC	1 cut(s)	513
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	231, 1014
Bsp143I	GATC	3 cut(s)	178, 345, 400
BspACI	CCGC	3 cut(s)	235, 921, 932
BspANI	GGCC	4 cut(s)	147, 175, 615, 752
BspCNI	CTCAG	2 cut(s)	499, 553
BspDI	ATCGAT	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	648, 1013
BspMI	ACCTGC	1 cut(s)	878
BspPI	GGATC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	513
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	1038
BsrI	ACTGG	3 cut(s)	192, 491, 922
BssECI	CCNNGG	2 cut(s)	640, 897
BssMI	GATC	3 cut(s)	178, 345, 400
Bst2UI	CCWGG	1 cut(s)	1020
Bst4CI	ACNGT	2 cut(s)	169, 626
BstC8I	GCNNGC	2 cut(s)	79, 384
BstDEI	CTNAG	2 cut(s)	507, 561
BstF5I	GGATG	5 cut(s)	441, 487, 810, 864, 1000
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	181, 348, 403
BstMAI	GTCTC	2 cut(s)	254, 513
BstMBI	GATC	3 cut(s)	178, 345, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	1020
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	1018
BstV1I	GCAGC	3 cut(s)	31, 732, 936
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	4 cut(s)	147, 175, 615, 752
BsuTUI	ATCGAT	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	5 cut(s)	441, 487, 810, 864, 1000
BtsI	GCAGTG	1 cut(s)	949
BtsIMutI	CAGTG	3 cut(s)	185, 631, 949
BveI	ACCTGC	1 cut(s)	878
Cac8I	GCNNGC	2 cut(s)	79, 384
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	146, 614
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	352, 577, 647
CviAII	CATG	6 cut(s)	27, 78, 535, 680, 754, 928
CviQI	GTAC	3 cut(s)	352, 577, 647
DdeI	CTNAG	2 cut(s)	507, 561
DpnI	GATC	3 cut(s)	180, 347, 402
DpnII	GATC	3 cut(s)	178, 345, 400
DraI	TTTAAA	1 cut(s)	316
EaeI	YGGCCR	2 cut(s)	173, 750
EciI	GGCGGA	1 cut(s)	947
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	2 cut(s)	231, 1014
Eco31I	GGTCTC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	290, 792
Eco81I	CCTNAGG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	1018
EcoT38I	GRGCYC	2 cut(s)	231, 1014
FaeI	CATG	6 cut(s)	30, 81, 538, 683, 757, 931
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	6 cut(s)	26, 77, 534, 679, 753, 927
Fnu4HI	GCNGC	4 cut(s)	45, 721, 922, 925
FokI	GGATG	5 cut(s)	448, 474, 817, 871, 1007
FriOI	GRGCYC	2 cut(s)	231, 1014
Fsp4HI	GCNGC	4 cut(s)	45, 721, 922, 925
FspBI	CTAG	5 cut(s)	6, 48, 483, 834, 972
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	4 cut(s)	45, 721, 922, 925
GsaI	CCCAGC	1 cut(s)	951
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	147, 175, 615, 752
HapII	CCGG	2 cut(s)	176, 224
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	30, 81, 538, 683, 757, 931
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	5 cut(s)	445, 456, 563, 952, 1004
HpaII	CCGG	2 cut(s)	176, 224
HphI	GGTGA	1 cut(s)	826
Hpy166II	GTNNAC	1 cut(s)	1082
Hpy188I	TCNGA	3 cut(s)	497, 529, 772
Hpy188III	TCNNGA	3 cut(s)	304, 506, 680
Hpy8I	GTNNAC	1 cut(s)	1082
HpyAV	CCTTC	6 cut(s)	67, 265, 433, 542, 660, 767
HpyCH4III	ACNGT	2 cut(s)	169, 626
HpyCH4V	TGCA	7 cut(s)	26, 206, 292, 386, 659, 757, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	2 cut(s)	507, 561
Hsp92II	CATG	6 cut(s)	30, 81, 538, 683, 757, 931
HspAI	GCGC	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	650
Kzo9I	GATC	3 cut(s)	178, 345, 400
LmnI	GCTCC	3 cut(s)	226, 295, 1017
Lsp1109I	GCAGC	3 cut(s)	31, 732, 936
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	5 cut(s)	6, 48, 483, 834, 972
MaeIII	GTNAC	3 cut(s)	155, 635, 986
MalI	GATC	3 cut(s)	180, 347, 402
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	3 cut(s)	178, 345, 400
MboII	GAAGA	6 cut(s)	253, 256, 319, 404, 593, 1089
MfeI	CAATTG	2 cut(s)	197, 703
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	231, 1014
MlsI	TGGCCA	1 cut(s)	752
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	2 cut(s)	572, 961
Mox20I	TGGCCA	1 cut(s)	752
MroXI	GAANNNNTTC	1 cut(s)	1003
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	3 cut(s)	86, 315, 674
MslI	CAYNNNNRTG	1 cut(s)	684
Msp20I	TGGCCA	1 cut(s)	752
MspI	CCGG	2 cut(s)	176, 224
MspR9I	CCNGG	1 cut(s)	1020
MunI	CAATTG	2 cut(s)	197, 703
Mva1269I	GAATGC	1 cut(s)	790
MvaI	CCWGG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	3 cut(s)	178, 345, 400
NlaIII	CATG	6 cut(s)	30, 81, 538, 683, 757, 931
NlaIV	GGNNCC	2 cut(s)	648, 1013
NmuCI	GTSAC	2 cut(s)	155, 635
NspI	RCATGY	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	230
PagI	TCATGA	1 cut(s)	679
PctI	GAATGC	1 cut(s)	790
PdmI	GAANNNNTTC	1 cut(s)	1003
PfeI	GAWTC	3 cut(s)	445, 456, 1004
PfoI	TCCNGGA	1 cut(s)	1018
PkrI	GCNGC	4 cut(s)	46, 722, 923, 926
PleI	GAGTC	2 cut(s)	571, 960
PpsI	GAGTC	2 cut(s)	571, 960
PsiI	TTATAA	1 cut(s)	870
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	1018
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	1018
PspN4I	GGNNCC	2 cut(s)	648, 1013
PspPI	GGNCC	2 cut(s)	146, 614
PspXI	VCTCGAGB	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	345
RsaI	GTAC	3 cut(s)	353, 578, 648
RsaNI	GTAC	3 cut(s)	352, 577, 647
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	86, 315, 674
SatI	GCNGC	4 cut(s)	45, 721, 922, 925
Sau3AI	GATC	3 cut(s)	178, 345, 400
Sau96I	GGNCC	2 cut(s)	146, 614
SchI	GAGTC	2 cut(s)	572, 961
ScrFI	CCNGG	1 cut(s)	1020
SduI	GDGCHC	2 cut(s)	231, 1014
SfaNI	GCATC	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SpeI	ACTAGT	1 cut(s)	833
SphI	GCATGC	1 cut(s)	81
SsiI	CCGC	3 cut(s)	235, 921, 932
SspMI	CTAG	5 cut(s)	6, 48, 483, 834, 972
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	1018
TaaI	ACNGT	2 cut(s)	169, 626
TaqI	TCGA	2 cut(s)	231, 459
TaqII	GACCGA	1 cut(s)	654
TauI	GCSGC	1 cut(s)	924
TfiI	GAWTC	3 cut(s)	445, 456, 1004
Tru1I	TTAA	3 cut(s)	86, 315, 674
Tru9I	TTAA	3 cut(s)	86, 315, 674
TscAI	CASTG	3 cut(s)	192, 631, 949
TseFI	GTSAC	2 cut(s)	155, 635
TseI	GCWGC	3 cut(s)	44, 720, 924
Tsp45I	GTSAC	2 cut(s)	155, 635
TspDTI	ATGAA	2 cut(s)	452, 696
TspRI	CASTG	3 cut(s)	192, 631, 949
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	1 cut(s)	81
XhoI	CTCGAG	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	1003
XspI	CTAG	5 cut(s)	6, 48, 483, 834, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.