Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Reverse (-)

13733550 .. 13734767

Gene Structure 1218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G168600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGACTAGGAAGAAGGTCAAACTAGCATGGATAACGAATGATAGTGCTAGGAAAACCAGCTTCAGAAAAAGGAAGGAAGGCCTGTTGAAAAAATTGAGTGAGTTGAGCATCTTGTGTGACGTGAGTGGCTTTGCTATTATTTATGGCCCAGACGACAAGGAGCCGGTTGTGTGGCCTTCACGCCCAATTGCGGAAGAATTGCTCGCAAGGTTTCAGAGGATACCAGAAGTAGATCGGTGCAAGAAGATGATGAACCAAGAGACATACCTTAATGATAGATTAGCTAAATTGAAAGAACAACTGACAAAAACTCACAAAAAGAACAAAGAGATGGAGATGAACATCATCATGTCCCAAATTCAAGAAGGTAAGCCATTGAATGAATTTGGAACTTGTGAACTAACTTGTTTGGTTTTGTTTTTGGAGGAGAAGATAAAAGAGATCTGGAAACGGATCAAGTACCTCGGGCATGAGGCAAATCTTCCCTTAGGTGCTTTTTCTCCTCATGAGGGTGGGGATGCGGAAAACACCACTGTCCCCGATGAATGGAACCCTACAGAGTCTTTGTATAATTATTTTAGCAAAGAAAATGGGAAGCAAAGTCAGAACATGTCTGTTGTTACTGCTAGCATTAGCAATGTTATGGGTAACATGGGTTTGCCACCACATGCATCTTTTGGCAACACTTCCGGTATTAATGTTTCTAAAGAGATGAGGCTGCTTAGTGAGAACTTTGGAATGAGTAGATCAAGTGATATAGGGTTTATGTATGGAAATATTAAGGGTGACATGAGCAATGTTGGAAGTGATTTCGGCACGTCCTTTGGGAGATTTGGCGACAGAAAATATAGGAATGATATAGAGTGGTCTTATGAGAATTTGGGAGCGAGCAGTGATGGAAGTGGTATAGGGTTGCCTCATGTGAATAATGGGTTACTGCAAACTCATTATGGGAATGTTAATGGAAGTAGCAGTGGTAATGTGAGAAATGATGCGGAGGACATTGGAGGGATTAATGGAGGATATGATAATATAGAGGGGCATATACCTCATCCTAGTAACATAACAGGGGGTTTTGGAAGCAATGTTGGGGTGCCTCATGGAGCTGGTAGTGATACAGGACTTCCAAATGGGTTATCTGGAGAAAGTAATGCTGGAAGTGATGCTGGGGTTCTCAATGATATTAGCAAAACCCGGAAAAGATCATTCTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

406

Amino Acids

44.44

Weight (kDa)

6.53

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1093
AciI	CCGC	3 cut(s)	191, 521, 995
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	3 cut(s)	357, 383, 877
AcuI	CTGAAG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	3 cut(s)	190, 509, 546
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	4 cut(s)	88, 292, 362, 379
AjiI	CACGTC	2 cut(s)	121, 819
AluBI	AGCT	3 cut(s)	60, 284, 1106
AluI	AGCT	3 cut(s)	60, 284, 1106
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	3 cut(s)	79, 145, 173
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	3 cut(s)	357, 383, 877
AseI	ATTAAT	2 cut(s)	696, 1014
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	1195
AsuHPI	GGTGA	1 cut(s)	797
AsuNHI	GCTAGC	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	1093
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	2 cut(s)	325, 890
BciVI	GTATCC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	1195
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	5 cut(s)	6, 23, 48, 627, 1056
BfmI	CTRYAG	1 cut(s)	555
BfuI	GTATCC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	1 cut(s)	719
BlsI	GCNGC	1 cut(s)	720
Bme1390I	CCNGG	1 cut(s)	1195
BmeT110I	CYCGRG	1 cut(s)	464
BmgBI	CACGTC	2 cut(s)	121, 819
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	162, 551, 1095
BmrFI	CCNGG	1 cut(s)	1195
BmsI	GCATC	5 cut(s)	117, 508, 680, 982, 1153
BmtI	GCTAGC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	1161
BpuMI	CCSGG	1 cut(s)	1195
BsaBI	GATNNNNATC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 509, 546
Bse118I	RCCGGY	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	487
Bse3DI	GCAATG	3 cut(s)	643, 802, 1090
Bse8I	GATNNNNATC	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	2 cut(s)	523, 1051
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	190, 509, 546
BseMI	GCAATG	3 cut(s)	643, 802, 1090
BseRI	GAGGAG	2 cut(s)	440, 492
BseXI	GCAGC	1 cut(s)	705
BseYI	CCCAGC	1 cut(s)	1166
BshFI	GGCC	3 cut(s)	81, 147, 175
BshNI	GGYRCC	1 cut(s)	1093
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	3 cut(s)	164, 690, 1195
BslFI	GGGAC	2 cut(s)	337, 521
BslI	CCNNNNNNNGG	3 cut(s)	190, 509, 546
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	337, 521
BsnI	GGCC	3 cut(s)	81, 147, 175
BsoBI	CYCGRG	1 cut(s)	464
Bsp143I	GATC	5 cut(s)	232, 441, 453, 746, 1202
BspACI	CCGC	3 cut(s)	191, 521, 995
BspANI	GGCC	3 cut(s)	81, 147, 175
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	3 cut(s)	162, 551, 1095
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	1093
BsrDI	GCAATG	3 cut(s)	643, 802, 1090
BsrFI	RCCGGY	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	5 cut(s)	232, 441, 453, 746, 1202
Bst4CI	ACNGT	1 cut(s)	535
BstC8I	GCNNGC	3 cut(s)	204, 628, 889
BstDEI	CTNAG	2 cut(s)	487, 722
BstF5I	GGATG	2 cut(s)	523, 1051
BstKTI	GATC	5 cut(s)	235, 444, 456, 749, 1205
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	5 cut(s)	232, 441, 453, 746, 1202
BstNSI	RCATGY	2 cut(s)	613, 671
BstSCI	CCNGG	1 cut(s)	1193
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
Bsu36I	CCTNAGG	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	81, 147, 175
BtrI	CACGTC	2 cut(s)	121, 819
BtsCI	GGATG	2 cut(s)	523, 1051
BtsI	GCAGTG	2 cut(s)	898, 979
BtsIMutI	CAGTG	3 cut(s)	531, 898, 979
Cac8I	GCNNGC	3 cut(s)	204, 628, 889
CciI	TCATGA	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	460
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	487, 722
DpnI	GATC	5 cut(s)	234, 443, 455, 748, 1204
DpnII	GATC	5 cut(s)	232, 441, 453, 746, 1202
Eco147I	AGGCCT	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	673
FaqI	GGGAC	2 cut(s)	337, 521
Fnu4HI	GCNGC	1 cut(s)	719
FokI	GGATG	2 cut(s)	530, 1038
Fsp4HI	GCNGC	1 cut(s)	719
FspBI	CTAG	5 cut(s)	6, 23, 48, 627, 1056
GluI	GCNGC	1 cut(s)	719
GsaI	CCCAGC	1 cut(s)	1170
GsuI	CTGGAG	1 cut(s)	1161
HaeIII	GGCC	3 cut(s)	81, 147, 175
HapII	CCGG	3 cut(s)	164, 690, 1195
HinfI	GANTC	1 cut(s)	560
HpaII	CCGG	3 cut(s)	164, 690, 1195
HphI	GGTGA	1 cut(s)	797
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	3 cut(s)	65, 216, 606
Hpy188III	TCNNGA	4 cut(s)	362, 445, 506, 1140
Hpy8I	GTNNAC	1 cut(s)	398
HpyAV	CCTTC	5 cut(s)	7, 67, 71, 186, 359
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	2 cut(s)	120, 818
HpyCH4V	TGCA	3 cut(s)	240, 671, 940
HpyF3I	CTNAG	2 cut(s)	487, 722
HpySE526I	ACGT	2 cut(s)	120, 818
Kzo9I	GATC	5 cut(s)	232, 441, 453, 746, 1202
LmnI	GCTCC	3 cut(s)	160, 884, 1103
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	5 cut(s)	117, 508, 680, 982, 1153
MaeI	CTAG	5 cut(s)	6, 23, 48, 627, 1056
MaeII	ACGT	2 cut(s)	120, 818
MaeIII	GTNAC	6 cut(s)	116, 619, 647, 785, 933, 1058
MalI	GATC	5 cut(s)	234, 443, 455, 748, 1204
MboI	GATC	5 cut(s)	232, 441, 453, 746, 1202
MboII	GAAGA	5 cut(s)	22, 206, 256, 442, 473
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	441
MluCI	AATT	8 cut(s)	92, 186, 197, 287, 357, 383, 571, 877
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	781
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	5 cut(s)	270, 696, 780, 960, 1014
MslI	CAYNNNNRTG	2 cut(s)	347, 510
MspI	CCGG	3 cut(s)	164, 690, 1195
MspR9I	CCNGG	1 cut(s)	1195
MunI	CAATTG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	1195
NdeII	GATC	5 cut(s)	232, 441, 453, 746, 1202
NheI	GCTAGC	1 cut(s)	626
NlaIV	GGNNCC	3 cut(s)	162, 551, 1095
NmuCI	GTSAC	2 cut(s)	116, 785
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	2 cut(s)	613, 671
PagI	TCATGA	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	81
PciI	ACATGT	1 cut(s)	609
PkrI	GCNGC	1 cut(s)	720
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PscI	ACATGT	1 cut(s)	609
PshBI	ATTAAT	2 cut(s)	696, 1014
PspFI	CCCAGC	1 cut(s)	1166
PspN4I	GGNNCC	3 cut(s)	162, 551, 1095
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	2 cut(s)	347, 510
SaqAI	TTAA	5 cut(s)	270, 696, 780, 960, 1014
SatI	GCNGC	1 cut(s)	719
Sau3AI	GATC	5 cut(s)	232, 441, 453, 746, 1202
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	1195
SfaNI	GCATC	5 cut(s)	117, 508, 680, 982, 1153
SfcI	CTRYAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	2 cut(s)	347, 510
Sse9I	AATT	8 cut(s)	92, 186, 197, 287, 357, 383, 571, 877
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	3 cut(s)	191, 521, 995
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	5 cut(s)	6, 23, 48, 627, 1056
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	1193
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	2 cut(s)	123, 821
TasI	AATT	8 cut(s)	92, 186, 197, 287, 357, 383, 571, 877
Tru1I	TTAA	5 cut(s)	270, 696, 780, 960, 1014
Tru9I	TTAA	5 cut(s)	270, 696, 780, 960, 1014
TscAI	CASTG	3 cut(s)	538, 898, 979
TseFI	GTSAC	2 cut(s)	116, 785
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	2 cut(s)	116, 785
TspDTI	ATGAA	4 cut(s)	266, 353, 396, 558
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	3 cut(s)	538, 898, 979
VspI	ATTAAT	2 cut(s)	696, 1014
XapI	RAATTY	3 cut(s)	357, 383, 877
XceI	RCATGY	2 cut(s)	613, 671
XspI	CTAG	5 cut(s)	6, 23, 48, 627, 1056
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.