Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8399941.1

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Forward (+)

489 .. 1269

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8399941.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 781 bp

atgactcgatcaaaggtgaaacttgcatggatacaaaagaagagttcacgaaaatccaccttcaaaaataggagcgaaggcttgttgatgaaagtggagcaactctgcattctatgcgatttgcatgcgttcgtcatcatatacaacccagatactgaagaactgactgtatggcctaaccaccaagaagtggaacaacttctgagaaggttcatgagacttcctgatttcacacgaaggaggaaaatgaaggaccaagagagtcatatggaggagagagtggcccatatgcaggtggaacagacgagggtactcaagaagaacaaagagatggaactaaacgatgtcattggtcaaattgagaggaaaggtaaattttttcatgagtttagccacaaggagttagctgatctggattctttcttgaaggaaaagatggatgagatcaagaagctaatggattaccatgatcataagaatattcctcatccagtagttattgaggatggaaagtcttatgatcacatcatgagccaaatcggaagaaacaccactgattctctatttgtttctttgaagagaggaaagagaaaacaatctgggataatgacaaaaacttctggcaatagtagtataatagttgctaataatatggatctacccttagcaagtaatgacggccattgtggagctgggggtatggagtgggcatcttttggagtagagtctgatggaaatagaagtgagcagaagagaataaataatttggggtttacttctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

260

Amino Acids

30.17

Weight (kDa)

9.11

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	283
Acc36I	ACCTGC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	190
AclWI	GGATC	1 cut(s)	663
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	190, 292
AgsI	TTSAA	3 cut(s)	64, 427, 577
AluBI	AGCT	3 cut(s)	407, 454, 692
AluI	AGCT	3 cut(s)	407, 454, 692
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	663
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	173, 282, 679
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	253, 283
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	253
BccI	CCATC	4 cut(s)	325, 430, 500, 725
BceAI	ACGGC	1 cut(s)	694
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	2 cut(s)	469, 520
BcoDI	GTCTC	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	253, 283
BmsI	GCATC	1 cut(s)	719
Bpu10I	CCTNAGC	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 292
Bse1I	ACTGG	1 cut(s)	491
BseGI	GGATG	3 cut(s)	445, 487, 511
BseLI	CCNNNNNNNGG	2 cut(s)	190, 292
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	692
BshFI	GGCC	3 cut(s)	175, 284, 681
BslI	CCNNNNNNNGG	2 cut(s)	190, 292
BsmAI	GTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	3 cut(s)	175, 284, 681
Bsp143I	GATC	6 cut(s)	8, 409, 444, 469, 520, 655
BspANI	GGCC	3 cut(s)	175, 284, 681
BspCNI	CTCAG	1 cut(s)	195
BspHI	TCATGA	3 cut(s)	213, 382, 528
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	491
BssMI	GATC	6 cut(s)	8, 409, 444, 469, 520, 655
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	3 cut(s)	35, 572, 746
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	203, 664
BstF5I	GGATG	3 cut(s)	445, 487, 511
BstKTI	GATC	6 cut(s)	11, 412, 447, 472, 523, 658
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	6 cut(s)	8, 409, 444, 469, 520, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	175, 284, 681
BtsCI	GGATG	3 cut(s)	445, 487, 511
BtsIMutI	CAGTG	1 cut(s)	552
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	3 cut(s)	213, 382, 528
Cfr13I	GGNCC	2 cut(s)	253, 283
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	6 cut(s)	27, 125, 214, 383, 467, 529
CviJI	RGCY	9 cut(s)	81, 175, 284, 393, 407, 454, 534, 681, 692
CviKI_1	RGCY	9 cut(s)	81, 175, 284, 393, 407, 454, 534, 681, 692
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	203, 664
DpnI	GATC	6 cut(s)	10, 411, 446, 471, 522, 657
DpnII	GATC	6 cut(s)	8, 409, 444, 469, 520, 655
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	3 cut(s)	35, 572, 746
EarI	CTCTTC	3 cut(s)	35, 572, 746
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	177
FaeI	CATG	6 cut(s)	30, 128, 217, 386, 470, 532
FatI	CATG	6 cut(s)	26, 124, 213, 382, 466, 528
FauNDI	CATATG	2 cut(s)	267, 288
FbaI	TGATCA	2 cut(s)	469, 520
FokI	GGATG	3 cut(s)	452, 474, 518
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	175, 284, 681
Hin1II	CATG	6 cut(s)	30, 128, 217, 386, 470, 532
HinfI	GANTC	5 cut(s)	4, 262, 416, 557, 725
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	47, 774
Hpy188I	TCNGA	3 cut(s)	204, 542, 730
Hpy188III	TCNNGA	9 cut(s)	48, 214, 224, 316, 383, 413, 424, 448, 529
Hpy8I	GTNNAC	2 cut(s)	47, 774
HpyAV	CCTTC	6 cut(s)	70, 71, 201, 231, 244, 421
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	26, 108, 124, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	203, 664
Hsp92II	CATG	6 cut(s)	30, 128, 217, 386, 470, 532
Ksp22I	TGATCA	2 cut(s)	469, 520
Kzo9I	GATC	6 cut(s)	8, 409, 444, 469, 520, 655
LmnI	GCTCC	3 cut(s)	72, 97, 689
LpnPI	CCDG	8 cut(s)	162, 237, 278, 398, 504, 585, 606, 678
LweI	GCATC	1 cut(s)	719
MalI	GATC	6 cut(s)	10, 411, 446, 471, 522, 657
MboI	GATC	6 cut(s)	8, 409, 444, 469, 520, 655
MboII	GAAGA	6 cut(s)	52, 170, 331, 555, 589, 763
MflI	RGATCY	1 cut(s)	655
MluCI	AATT	3 cut(s)	357, 374, 763
MlyI	GAGTC	2 cut(s)	271, 734
MnlI	CCTC	7 cut(s)	234, 265, 300, 357, 495, 496, 575
MroXI	GAANNNNTTC	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeI	CATATG	2 cut(s)	267, 288
NdeII	GATC	6 cut(s)	8, 409, 444, 469, 520, 655
NlaIII	CATG	6 cut(s)	30, 128, 217, 386, 470, 532
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PagI	TCATGA	3 cut(s)	213, 382, 528
PaqCI	CACCTGC	1 cut(s)	283
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	416, 557
PflMI	CCANNNNNTGG	1 cut(s)	190
PleI	GAGTC	2 cut(s)	270, 733
PpsI	GAGTC	2 cut(s)	270, 733
PspFI	CCCAGC	1 cut(s)	692
PspPI	GGNCC	2 cut(s)	253, 283
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
Sau3AI	GATC	6 cut(s)	8, 409, 444, 469, 520, 655
Sau96I	GGNCC	2 cut(s)	253, 283
SchI	GAGTC	2 cut(s)	271, 734
SetI	ASST	8 cut(s)	18, 62, 212, 297, 373, 409, 456, 694
SfaNI	GCATC	1 cut(s)	719
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	128
Sse9I	AATT	3 cut(s)	357, 374, 763
SspI	AATATT	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	357, 374, 763
TfiI	GAWTC	2 cut(s)	416, 557
TscAI	CASTG	1 cut(s)	559
TspDTI	ATGAA	4 cut(s)	104, 202, 263, 371
TspRI	CASTG	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.