Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Forward (+)

12527629 .. 12528300

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAATAACAAGCTGAAAACTGCATGGATAGAGGATGATAAGTCCAGGAAGGCCTGCTATAGAAAGAGGAAGATATGCTTGCTGAAGAAATTAAATGAGCTTACCATTTTATGTGACGTGTCTGCCTTTCTCATCATCTATGGCCCCGAAAAGGACGAGCTGGTCGTGTGGCCTTCCCGCCCGGTGGTGCAAGAACTGCTTGAAAAGTTCTTGAGGCTACCACTAGCAGACCAATGCAGAAAGATGCTGGATCAAAAGGCTTACCTCAAGGAGAGGGCAGCCAAAATAGAGGAGCAAATAAGAAAGGCTAAGAAAAAGAACCATGAGATGAAGATGAAAGACATCTTGCACAAAATTCAAGAAGGTAAGCCACTGAGTGAATTTGAAACTAGCGACCTAGTTGATTTCATTTTGTTTTTGGAGGAGAAGATGTTAGAGATCCAGGAACGGGTTGAGCTTTTGGAGCAGCATGTTCCACAAGGTGCTGGTGAAAAAGAGAAGGGGAAGGAGATTGAGAACAATGCTGTTAATATCCCTCGAAATGAGAATATTACTGGAGGCATCTGCAGCAGCAATAATATGGGAGAAAATGAAAAGAGTGGCTTTAGACTGATGGGTGTTGATATTAAAGTGGGGCATGTACTACATGAGGGCAATAATGGAGGCACTCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

224

Amino Acids

25.8

Weight (kDa)

8.17

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	2 cut(s)	258, 433
AcsI	RAATTY	2 cut(s)	354, 380
AcuI	CTGAAG	1 cut(s)	104
AdeI	CACNNNGTG	2 cut(s)	377, 482
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	3 cut(s)	151, 184, 448
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	203, 359, 386
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	44, 441
AluBI	AGCT	4 cut(s)	13, 100, 160, 457
AluI	AGCT	4 cut(s)	13, 100, 160, 457
AlwI	GGATC	2 cut(s)	258, 433
AoxI	GGCC	3 cut(s)	51, 142, 170
ApeKI	GCWGC	4 cut(s)	278, 466, 567, 570
ApoI	RAATTY	2 cut(s)	354, 380
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	290, 478, 579, 582
BccI	CCATC	1 cut(s)	607
BciT130I	CCWGG	2 cut(s)	46, 443
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	3 cut(s)	224, 390, 398
BfmI	CTRYAG	2 cut(s)	58, 565
BisI	GCNGC	4 cut(s)	279, 467, 568, 571
BlsI	GCNGC	4 cut(s)	280, 468, 569, 572
Bme1390I	CCNGG	3 cut(s)	46, 182, 443
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	3 cut(s)	46, 182, 443
BmsI	GCATC	2 cut(s)	234, 570
BpmI	CTGGAG	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	232, 251
BpuMI	CCSGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 184, 448
Bse1I	ACTGG	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	46, 443
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	3 cut(s)	151, 184, 448
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	2 cut(s)	305, 437
BseXI	GCAGC	4 cut(s)	290, 478, 579, 582
BshFI	GGCC	3 cut(s)	53, 144, 172
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	151, 184, 448
BsnI	GGCC	3 cut(s)	53, 144, 172
Bsp143I	GATC	2 cut(s)	250, 438
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	3 cut(s)	53, 144, 172
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	569
BspPI	GGATC	2 cut(s)	258, 433
BsrI	ACTGG	1 cut(s)	559
BssMI	GATC	2 cut(s)	250, 438
Bst2UI	CCWGG	2 cut(s)	46, 443
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	55, 80
BstDEI	CTNAG	3 cut(s)	309, 374, 669
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	253, 441
BstMBI	GATC	2 cut(s)	250, 438
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 463, 567
BstNI	CCWGG	2 cut(s)	46, 443
BstNSI	RCATGY	2 cut(s)	473, 641
BstSCI	CCNGG	3 cut(s)	44, 180, 441
BstSFI	CTRYAG	2 cut(s)	58, 565
BstV1I	GCAGC	4 cut(s)	290, 478, 579, 582
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	53, 144, 172
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	55, 80
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	5 cut(s)	24, 323, 470, 638, 647
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	3 cut(s)	309, 374, 669
DpnI	GATC	2 cut(s)	252, 440
DpnII	GATC	2 cut(s)	250, 438
DraIII	CACNNNGTG	2 cut(s)	377, 482
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eco147I	AGGCCT	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	44, 441
FaeI	CATG	5 cut(s)	27, 326, 473, 641, 650
FalI	AAGNNNNNCTT	6 cut(s)	62, 94, 183, 215, 587, 619
FatI	CATG	5 cut(s)	23, 322, 469, 637, 646
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	4 cut(s)	279, 467, 568, 571
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	279, 467, 568, 571
FspBI	CTAG	3 cut(s)	224, 390, 398
GluI	GCNGC	4 cut(s)	279, 467, 568, 571
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	3 cut(s)	53, 144, 172
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	5 cut(s)	27, 326, 473, 641, 650
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	500
Hpy188III	TCNNGA	2 cut(s)	211, 359
HpyAV	CCTTC	5 cut(s)	43, 183, 356, 493, 499
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	5 cut(s)	23, 190, 237, 349, 567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 463, 567
HpyF3I	CTNAG	3 cut(s)	309, 374, 669
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	27, 326, 473, 641, 650
Kzo9I	GATC	2 cut(s)	250, 438
LmnI	GCTCC	2 cut(s)	292, 463
Lsp1109I	GCAGC	4 cut(s)	290, 478, 579, 582
LweI	GCATC	2 cut(s)	234, 570
MaeI	CTAG	3 cut(s)	224, 390, 398
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	252, 440
MboI	GATC	2 cut(s)	250, 438
MboII	GAAGA	4 cut(s)	82, 97, 343, 439
MflI	RGATCY	1 cut(s)	438
MluCI	AATT	3 cut(s)	89, 354, 380
MseI	TTAA	3 cut(s)	92, 528, 627
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	46, 182, 443
MvaI	CCWGG	2 cut(s)	46, 443
MwoI	GCNNNNNNNGC	3 cut(s)	196, 463, 567
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	250, 438
NlaIII	CATG	5 cut(s)	27, 326, 473, 641, 650
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	2 cut(s)	473, 641
PceI	AGGCCT	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfoI	TCCNGGA	2 cut(s)	44, 441
PkrI	GCNGC	4 cut(s)	280, 468, 569, 572
Psp6I	CCWGG	2 cut(s)	44, 441
PspGI	CCWGG	2 cut(s)	44, 441
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	438
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SaqAI	TTAA	3 cut(s)	92, 528, 627
SatI	GCNGC	4 cut(s)	279, 467, 568, 571
Sau3AI	GATC	2 cut(s)	250, 438
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	46, 182, 443
SetI	ASST	9 cut(s)	15, 102, 120, 162, 267, 367, 399, 459, 484
SfaNI	GCATC	2 cut(s)	234, 570
SfcI	CTRYAG	2 cut(s)	58, 565
SmlI	CTYRAG	2 cut(s)	211, 266
SmoI	CTYRAG	2 cut(s)	211, 266
Sse9I	AATT	3 cut(s)	89, 354, 380
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	178
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	3 cut(s)	224, 390, 398
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	44, 180, 441
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	538
TasI	AATT	3 cut(s)	89, 354, 380
TatI	WGTACW	1 cut(s)	640
Tru1I	TTAA	3 cut(s)	92, 528, 627
Tru9I	TTAA	3 cut(s)	92, 528, 627
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	4 cut(s)	278, 466, 567, 570
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	5 cut(s)	17, 344, 350, 397, 606
TspRI	CASTG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	354, 380
XceI	RCATGY	2 cut(s)	473, 641
XspI	CTAG	3 cut(s)	224, 390, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.