Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Reverse (-)

63341366 .. 63342133

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG445900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGACTTCCTGATTTCACACGAAGACGGAAAATGAAGGACCAAGAGAGTCACATGGAGGAGAGAGTGGCCCATATGCAAGTGGAACAGACGAGGGTACTCAAGAAGAACAAAGAGATGGAACTAAACGATGTCATTGGTCAAATTGAGAGGAAAGGTAAATTTTTTCATGAGTTTAGCCACAAGGAGTTAACTGATCTGGATTCTTTCTTGAAGGAAAAGATGGATGAGATCAAGAAACTAATGGATTACCATGGTCATAATAATATTCCTCATCCAGTAGCTATTGAGGATGGAAAGTCTTATGATCACATCATGAGCCAAATCGGAAGAAATACCACTGATTCTCTATTTGGTTCTTTGAAGAGAGGAAAGAGAAAACAATCTGGGATAATGACAGAAACTTCTGGCTACAGTAGTACAATAGCTGCCAATAATATGGATCTACCCTTAGCAAGTAATGATGGCCATTGTGGAGCTGAGGGTATGGAGTGGGCAACTTTTGGAGTAGAGTCTGATGGAAATAGAAGTGAGCAAATGAGAATAAATCATTTGGGGTTTACTTCTGATATGCCTTTCCATGGTGATGATATTTATTTGGATACTGTTAGAGGCAGCAATGCTGGGTATAATGATGTTGGAGGGAATTTGCTGCATCTGCCCGAGAATGAAGGTGGTATGGAAAGTGATATGGAGGTGCCGCCTTGGTTTCTTGGAGATAACGATGCCGGAAGTGATGAAGGGCTTAAGTCTGTTTGGAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

255

Amino Acids

28.97

Weight (kDa)

5.37

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	697
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	1 cut(s)	450
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	161, 646
AfaI	GTAC	2 cut(s)	99, 421
AfiI	CCNNNNNNNGG	1 cut(s)	581
AflII	CTTAAG	1 cut(s)	746
AgsI	TTSAA	2 cut(s)	214, 364
AluBI	AGCT	3 cut(s)	284, 428, 479
AluI	AGCT	3 cut(s)	284, 428, 479
AlwI	GGATC	1 cut(s)	450
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	2 cut(s)	69, 466
ApeKI	GCWGC	3 cut(s)	428, 615, 652
ApoI	RAATTY	2 cut(s)	161, 646
AspS9I	GGNCC	2 cut(s)	40, 70
AsuHPI	GGTGA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	697
BbsI	GAAGAC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	415, 627, 639
BccI	CCATC	5 cut(s)	112, 217, 287, 458, 512
BciVI	GTATCC	1 cut(s)	595
BclI	TGATCA	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	412
BfrI	CTTAAG	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	595
BisI	GCNGC	4 cut(s)	429, 616, 653, 701
BlsI	GCNGC	4 cut(s)	430, 617, 654, 702
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	2 cut(s)	40, 70
BmiI	GGNNCC	1 cut(s)	699
BmsI	GCATC	2 cut(s)	664, 715
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	2 cut(s)	451, 480
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	253, 580, 704
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	625
BseDI	CCNNGG	3 cut(s)	253, 580, 704
BseGI	GGATG	3 cut(s)	232, 274, 298
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	415, 627, 639
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	2 cut(s)	71, 468
BshNI	GGYRCC	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	1 cut(s)	581
BsnI	GGCC	2 cut(s)	71, 468
BsoBI	CYCGRG	1 cut(s)	662
Bsp143I	GATC	4 cut(s)	196, 231, 307, 442
Bsp19I	CCATGG	2 cut(s)	253, 580
BspACI	CCGC	1 cut(s)	701
BspANI	GGCC	2 cut(s)	71, 468
BspCNI	CTCAG	1 cut(s)	472
BspHI	TCATGA	2 cut(s)	169, 315
BspLI	GGNNCC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	697
BspTI	CTTAAG	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	253, 580, 704
BssMI	GATC	4 cut(s)	196, 231, 307, 442
BssT1I	CCWWGG	3 cut(s)	253, 580, 704
Bst4CI	ACNGT	2 cut(s)	416, 607
Bst6I	CTCTTC	1 cut(s)	359
BstAFI	CTTAAG	1 cut(s)	746
BstDEI	CTNAG	2 cut(s)	451, 480
BstDSI	CCRYGG	2 cut(s)	253, 580
BstF5I	GGATG	3 cut(s)	232, 274, 298
BstKTI	GATC	4 cut(s)	199, 234, 310, 445
BstMBI	GATC	4 cut(s)	196, 231, 307, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	658
BstSFI	CTRYAG	1 cut(s)	412
BstV1I	GCAGC	3 cut(s)	415, 627, 639
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	442
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	71, 468
BtgI	CCRYGG	2 cut(s)	253, 580
BtsCI	GGATG	3 cut(s)	232, 274, 298
BtsIMutI	CAGTG	1 cut(s)	339
CciI	TCATGA	2 cut(s)	169, 315
Cfr13I	GGNCC	2 cut(s)	40, 70
Csp6I	GTAC	2 cut(s)	98, 420
CviAII	CATG	5 cut(s)	55, 170, 254, 316, 581
CviJI	RGCY	9 cut(s)	71, 180, 284, 321, 411, 428, 468, 479, 745
CviKI_1	RGCY	9 cut(s)	71, 180, 284, 321, 411, 428, 468, 479, 745
CviQI	GTAC	2 cut(s)	98, 420
DdeI	CTNAG	2 cut(s)	451, 480
DpnI	GATC	4 cut(s)	198, 233, 309, 444
DpnII	GATC	4 cut(s)	196, 231, 307, 442
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	3 cut(s)	253, 580, 704
Eco47I	GGWCC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	662
EcoT14I	CCWWGG	3 cut(s)	253, 580, 704
ErhI	CCWWGG	3 cut(s)	253, 580, 704
FaeI	CATG	5 cut(s)	58, 173, 257, 319, 584
FatI	CATG	5 cut(s)	54, 169, 253, 315, 580
FauNDI	CATATG	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	4 cut(s)	429, 616, 653, 701
FokI	GGATG	3 cut(s)	239, 261, 305
Fsp4HI	GCNGC	4 cut(s)	429, 616, 653, 701
GluI	GCNGC	4 cut(s)	429, 616, 653, 701
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	71, 468
HapII	CCGG	1 cut(s)	729
Hin1II	CATG	5 cut(s)	58, 173, 257, 319, 584
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	4 cut(s)	49, 203, 344, 512
HpaI	GTTAAC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	192, 561
Hpy188I	TCNGA	3 cut(s)	329, 517, 568
Hpy188III	TCNNGA	7 cut(s)	11, 103, 170, 200, 211, 235, 316
Hpy8I	GTNNAC	2 cut(s)	192, 561
HpyAV	CCTTC	4 cut(s)	31, 208, 665, 734
HpyCH4III	ACNGT	2 cut(s)	416, 607
HpyCH4V	TGCA	2 cut(s)	79, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	658
HpyF3I	CTNAG	2 cut(s)	451, 480
Hsp92II	CATG	5 cut(s)	58, 173, 257, 319, 584
Ksp22I	TGATCA	1 cut(s)	307
KspAI	GTTAAC	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	196, 231, 307, 442
LmnI	GCTCC	1 cut(s)	476
LpnPI	CCDG	7 cut(s)	24, 185, 291, 372, 393, 609, 742
Lsp1109I	GCAGC	3 cut(s)	415, 627, 639
LweI	GCATC	2 cut(s)	664, 715
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	4 cut(s)	198, 233, 309, 444
MboI	GATC	4 cut(s)	196, 231, 307, 442
MboII	GAAGA	4 cut(s)	36, 118, 342, 376
MflI	RGATCY	1 cut(s)	442
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	3 cut(s)	144, 161, 646
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	2 cut(s)	58, 521
MmeI	TCCRAC	1 cut(s)	619
Mox20I	TGGCCA	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	2 cut(s)	191, 747
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	468
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	1 cut(s)	658
NcoI	CCATGG	2 cut(s)	253, 580
NdeI	CATATG	1 cut(s)	75
NdeII	GATC	4 cut(s)	196, 231, 307, 442
NlaIII	CATG	5 cut(s)	58, 173, 257, 319, 584
NlaIV	GGNNCC	1 cut(s)	699
NmuCI	GTSAC	1 cut(s)	50
PagI	TCATGA	2 cut(s)	169, 315
PfeI	GAWTC	2 cut(s)	203, 344
PkrI	GCNGC	4 cut(s)	430, 617, 654, 702
PleI	GAGTC	2 cut(s)	57, 520
PpsI	GAGTC	2 cut(s)	57, 520
PspFI	CCCAGC	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	2 cut(s)	40, 70
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	2 cut(s)	99, 421
RsaNI	GTAC	2 cut(s)	98, 420
RseI	CAYNNNNRTG	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	191, 747
SatI	GCNGC	4 cut(s)	429, 616, 653, 701
Sau3AI	GATC	4 cut(s)	196, 231, 307, 442
Sau96I	GGNCC	2 cut(s)	40, 70
SchI	GAGTC	2 cut(s)	58, 521
SetI	ASST	7 cut(s)	160, 286, 430, 481, 676, 699, 764
SfaNI	GCATC	2 cut(s)	664, 715
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	2 cut(s)	101, 746
SmoI	CTYRAG	2 cut(s)	101, 746
Sse9I	AATT	3 cut(s)	144, 161, 646
SsiI	CCGC	1 cut(s)	701
SspI	AATATT	1 cut(s)	268
StyI	CCWWGG	3 cut(s)	253, 580, 704
TaaI	ACNGT	2 cut(s)	416, 607
TasI	AATT	3 cut(s)	144, 161, 646
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	2 cut(s)	203, 344
Tru1I	TTAA	2 cut(s)	191, 747
Tru9I	TTAA	2 cut(s)	191, 747
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	3 cut(s)	428, 615, 652
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	50, 158, 684, 753
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	161, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.