Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Forward (+)

7457400 .. 7458460

Gene Structure 1061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGACTCGATCAAAGGTGAAACTTGCATGGATACAAAAGAAGAGTACTCGAAACTCCACCTTCAAAAATAGGAGCGAAGGCTTGTTGATGAAAGTGGAGCAACTCTGCATTCTATGCGATTTGCATGCGTTCGTCATCATATACAACCCAGATACTGAAGAACTGACTGTATGGCCTAACCACCAAGAAGTGGAACAACTTCTGAGAAGGTTCATGAGACTTCCTGATTTCACACGAAGGAGGAAAATGAAGGACCAAGAGAGTCACATGGAGGAGAGAGTGGCCCATATGCAGGTGGAACAGACGAGGGTACTCAAGAAGAACAAAGAGATGGAACTAAACGATGTCATTGGTCAAATTGAGAGGAAAGGTAAATTTTTTCATGAGTTTAGCCACAAGGAGTTAACTGATCTGGATTCTTTCTTGAAGGAAAAGATGGATGAGATCAAGAAGCTAATGGATTACCATGATCATAAGAATATTCCTCATCCAAGAGGAAAGAGAAAACAATCTGGGACAATGACAGAAACTTCTGGCAACAGTAGTATAATAGCTGCCAATAATATGGATCTACCCTTAGCAAGTAATGATGGCCATTGTGGAGCTGGGGGTATGGAGTGGGCATCTTTTGGAGTAGAGTCTGATGGAAATAGAAGTGAGCAGATGAGAATAAATAATTTGGGGTTTACTTCTGATATGCCTTTCCATGGTGATGATATTTATTTGGATACTGTTGGAGGCAGCATTAATGCTGGGTATAATGATGTTGGAGGGAATTTGCTGCATCTGCCAGTGAATGAAGGAGGTATGGAAAGTGATATGGGGGTGCCGCCTTGGTTTCTTGGAGATAACGATGCCGGAAGTGATGAAGGGCTGCCTCCAGGTCTGTTTGGAGGTGTTGACACTGGCAGTGATGACGGGCTTCCATATGATTTTAAGGAATTATTGCAAAGCCCTTTCCCTAGCCCTCCTAGCCCTCATTCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

329

Amino Acids

37.11

Weight (kDa)

5.47

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 52	5.6e-11	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	283
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	826
AccB7I	CCANNNNNTGG	1 cut(s)	190
AciI	CCGC	1 cut(s)	830
AclWI	GGATC	1 cut(s)	576
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	374, 775
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	46, 312
AfiI	CCNNNNNNNGG	3 cut(s)	190, 292, 707
AgsI	TTSAA	2 cut(s)	64, 427
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	3 cut(s)	454, 554, 605
AluI	AGCT	3 cut(s)	454, 554, 605
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	576
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	173, 282, 592
ApeKI	GCWGC	4 cut(s)	554, 741, 781, 874
ApoI	RAATTY	2 cut(s)	374, 775
AseI	ATTAAT	1 cut(s)	747
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	253, 283
AsuHPI	GGTGA	2 cut(s)	28, 722
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	826
BbvI	GCAGC	4 cut(s)	541, 753, 768, 861
BccI	CCATC	4 cut(s)	325, 430, 584, 638
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	882
BciVI	GTATCC	2 cut(s)	24, 721
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	963, 972
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	2 cut(s)	24, 721
BisI	GCNGC	5 cut(s)	555, 742, 782, 830, 875
BlsI	GCNGC	5 cut(s)	556, 743, 783, 831, 876
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	882
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	253, 283
BmiI	GGNNCC	1 cut(s)	828
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	3 cut(s)	632, 793, 844
BpmI	CTGGAG	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	706, 833
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 292, 707
Bse1I	ACTGG	2 cut(s)	791, 910
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	706, 833
BseGI	GGATG	2 cut(s)	445, 487
BseLI	CCNNNNNNNGG	3 cut(s)	190, 292, 707
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	791, 910
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	4 cut(s)	541, 753, 768, 861
BseYI	CCCAGC	2 cut(s)	605, 752
BshFI	GGCC	3 cut(s)	175, 284, 594
BshNI	GGYRCC	1 cut(s)	826
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	190, 292, 707
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	3 cut(s)	175, 284, 594
Bsp143I	GATC	5 cut(s)	8, 409, 444, 469, 568
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	1 cut(s)	830
BspANI	GGCC	3 cut(s)	175, 284, 594
BspCNI	CTCAG	1 cut(s)	195
BspHI	TCATGA	2 cut(s)	213, 382
BspLI	GGNNCC	1 cut(s)	828
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	826
BsrI	ACTGG	2 cut(s)	791, 910
BssECI	CCNNGG	2 cut(s)	706, 833
BssMI	GATC	5 cut(s)	8, 409, 444, 469, 568
BssT1I	CCWWGG	2 cut(s)	706, 833
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	3 cut(s)	169, 542, 733
Bst6I	CTCTTC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	203, 577
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	2 cut(s)	445, 487
BstKTI	GATC	5 cut(s)	11, 412, 447, 472, 571
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	5 cut(s)	8, 409, 444, 469, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 787, 972
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	880
BstV1I	GCAGC	4 cut(s)	541, 753, 768, 861
BstX2I	RGATCY	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	568
BsuI	GTATCC	2 cut(s)	24, 721
BsuRI	GGCC	3 cut(s)	175, 284, 594
BtgI	CCRYGG	1 cut(s)	706
BtsCI	GGATG	2 cut(s)	445, 487
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	3 cut(s)	798, 903, 916
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	2 cut(s)	213, 382
Cfr13I	GGNCC	2 cut(s)	253, 283
Csp6I	GTAC	2 cut(s)	45, 311
CviAII	CATG	8 cut(s)	27, 125, 214, 268, 383, 467, 707, 987
CviQI	GTAC	2 cut(s)	45, 311
DdeI	CTNAG	2 cut(s)	203, 577
DpnI	GATC	5 cut(s)	10, 411, 446, 471, 570
DpnII	GATC	5 cut(s)	8, 409, 444, 469, 568
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	706, 833
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	880
EcoT14I	CCWWGG	2 cut(s)	706, 833
ErhI	CCWWGG	2 cut(s)	706, 833
FaeI	CATG	8 cut(s)	30, 128, 217, 271, 386, 470, 710, 990
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	8 cut(s)	26, 124, 213, 267, 382, 466, 706, 986
FauNDI	CATATG	2 cut(s)	288, 928
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	555, 742, 782, 830, 875
FokI	GGATG	2 cut(s)	452, 474
Fsp4HI	GCNGC	5 cut(s)	555, 742, 782, 830, 875
FspBI	CTAG	2 cut(s)	963, 972
GluI	GCNGC	5 cut(s)	555, 742, 782, 830, 875
GsaI	CCCAGC	2 cut(s)	609, 756
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	3 cut(s)	175, 284, 594
HapII	CCGG	1 cut(s)	858
Hin1II	CATG	8 cut(s)	30, 128, 217, 271, 386, 470, 710, 990
HincII	GTYRAC	2 cut(s)	405, 901
HindII	GTYRAC	2 cut(s)	405, 901
HinfI	GANTC	4 cut(s)	4, 262, 416, 638
HpaI	GTTAAC	1 cut(s)	405
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	2 cut(s)	28, 722
Hpy166II	GTNNAC	3 cut(s)	405, 687, 901
Hpy188I	TCNGA	3 cut(s)	204, 643, 694
Hpy188III	TCNNGA	7 cut(s)	214, 224, 316, 383, 413, 424, 448
Hpy8I	GTNNAC	3 cut(s)	405, 687, 901
HpyAV	CCTTC	8 cut(s)	70, 71, 201, 231, 244, 421, 794, 863
HpyCH4III	ACNGT	3 cut(s)	169, 542, 733
HpyCH4V	TGCA	6 cut(s)	26, 108, 124, 292, 784, 949
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 787, 972
HpyF3I	CTNAG	2 cut(s)	203, 577
Hsp92II	CATG	8 cut(s)	30, 128, 217, 271, 386, 470, 710, 990
Ksp22I	TGATCA	1 cut(s)	469
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	8, 409, 444, 469, 568
LmnI	GCTCC	3 cut(s)	72, 97, 602
Lsp1109I	GCAGC	4 cut(s)	541, 753, 768, 861
LweI	GCATC	3 cut(s)	632, 793, 844
MaeI	CTAG	2 cut(s)	963, 972
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	5 cut(s)	10, 411, 446, 471, 570
MboI	GATC	5 cut(s)	8, 409, 444, 469, 568
MboII	GAAGA	3 cut(s)	52, 170, 331
MflI	RGATCY	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	5 cut(s)	357, 374, 676, 775, 941
MluNI	TGGCCA	1 cut(s)	594
MlyI	GAGTC	2 cut(s)	271, 647
MmeI	TCCRAC	2 cut(s)	715, 748
Mox20I	TGGCCA	1 cut(s)	594
MroXI	GAANNNNTTC	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	3 cut(s)	404, 747, 936
MslI	CAYNNNNRTG	1 cut(s)	711
Msp20I	TGGCCA	1 cut(s)	594
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	1 cut(s)	882
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	882
MwoI	GCNNNNNNNGC	3 cut(s)	114, 787, 972
NcoI	CCATGG	1 cut(s)	706
NdeI	CATATG	2 cut(s)	288, 928
NdeII	GATC	5 cut(s)	8, 409, 444, 469, 568
NlaIII	CATG	8 cut(s)	30, 128, 217, 271, 386, 470, 710, 990
NlaIV	GGNNCC	1 cut(s)	828
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PagI	TCATGA	2 cut(s)	213, 382
PaqCI	CACCTGC	1 cut(s)	283
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	5 cut(s)	556, 743, 783, 831, 876
PleI	GAGTC	2 cut(s)	270, 646
PpsI	GAGTC	2 cut(s)	270, 646
PshBI	ATTAAT	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	880
PspFI	CCCAGC	2 cut(s)	605, 752
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	1 cut(s)	828
PspPI	GGNCC	2 cut(s)	253, 283
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	2 cut(s)	46, 312
RsaNI	GTAC	2 cut(s)	45, 311
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	3 cut(s)	404, 747, 936
SatI	GCNGC	5 cut(s)	555, 742, 782, 830, 875
Sau3AI	GATC	5 cut(s)	8, 409, 444, 469, 568
Sau96I	GGNCC	2 cut(s)	253, 283
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	271, 647
ScrFI	CCNGG	1 cut(s)	882
SfaNI	GCATC	3 cut(s)	632, 793, 844
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	128
Sse9I	AATT	5 cut(s)	357, 374, 676, 775, 941
SsiI	CCGC	1 cut(s)	830
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	963, 972
StyD4I	CCNGG	1 cut(s)	880
StyI	CCWWGG	2 cut(s)	706, 833
TaaI	ACNGT	3 cut(s)	169, 542, 733
TaqI	TCGA	2 cut(s)	7, 49
TasI	AATT	5 cut(s)	357, 374, 676, 775, 941
TatI	WGTACW	1 cut(s)	44
TauI	GCSGC	1 cut(s)	832
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	404, 747, 936
Tru9I	TTAA	3 cut(s)	404, 747, 936
TscAI	CASTG	3 cut(s)	798, 910, 916
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	4 cut(s)	554, 741, 781, 874
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	6 cut(s)	104, 202, 263, 371, 813, 882
TspRI	CASTG	3 cut(s)	798, 910, 916
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	253
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	2 cut(s)	374, 775
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	963, 972
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.