Rh7BG429600
MADS Family

MADS-box transcription factor PHERES 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016404
Physical Location & Seq
Forward (+)
49198992 .. 49200044
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG429600.1

Sequence Viewer

Length: 1053 bp
ATGACTCGATCAAAGGTGAAACTTGCATGGATACAAAAGAAGAGTTCTCGAAAATCCACCTTCAAAAATAGGAGCGAAGGCTTGTTGATGAAAGTGGAGCAACTCTGCATTCTATGCGATTTGCATGCGTTTGTCATCATATACAACCCAGATACTGAAGAATTGGCTGTATGGCCTAACCACCAAGAAGTGGAACAACTTCTCAGAAGGTTCATGAGACTTCCTGATTTCACACGAAGAAGGAAAATGAAGGACCAAGAGAGTCACATGGAGGAGAGAGTGGCCCATATGCAAGTGGAACAGACGAGGGTACTCAAGAAGAACAAAGAGAAGGAACTAAACGATGTCATTGGTCAAATTGAGAGGAAAGGTAAATTTTTTCATGAGTTTAGCCACAAGGAGTTAACTGATCTGGATTCTTTCTTGAAGGAAAAGATGGATGAGATCAAGAAACTAATGGATTACCATGGTCATAATAATATTCCTCATCCAGTAGCTATTGAGGATGGAAAGTCTTATGATCACATCATGAGCCAAATCGGAAGAAATACCACTGATTCTCTATTTGGTTCTTTGAAGAGAGGAAAGAGAAAACAATCTGGGATAATGACAGAAACTTCTGGCAACAGTAGTACAATAGCTGCCAATAATATGGATCTACCCTTAGCAAGTAATGATGGCCATTGTGGAGCTGGGGGTATGGAGTGGGCAACTTTTGGAGTAGAGTCTGATGGAAATAGAAGTGAGCAAATGAGAATAAATCATTTGTGGTTTACTTCTGATATGGCTTTCCATGGTGATGATATTTATTTGGATACTGTTGGAGGCAGCAATGCTGGGTATAATGATGTTGGAGGGAATTTGCAGCATCTGCCCGAGAATGAAGGTGGTATGGAAAGTGATATGGAGGTGCCGCCTTGGTTTCTTGGAGATAACGATGCCGGAAGTGATGAAGGGCTGTCTCCAAGTCTGTTTGGAGGTATTGACACCGGCATTGATGACGGGCTTCCATATGATTTTAAGGAATTGTTGCAAAGCTCTTTCCCTAGCTAG

Protein Analysis

350

Amino Acids

39.66

Weight (kDa)

5.48

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 51 3.3e-11 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 910
AccB7I CCANNNNNTGG 1 cut(s) 190
AciI CCGC 1 cut(s) 914
AclWI GGATC 1 cut(s) 663
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 2 cut(s) 374, 859
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 2 cut(s) 312, 634
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 3 cut(s) 64, 427, 577
AluBI AGCT 5 cut(s) 497, 641, 692, 1038, 1050
AluI AGCT 5 cut(s) 497, 641, 692, 1038, 1050
Alw26I GTCTC 2 cut(s) 211, 966
AlwI GGATC 1 cut(s) 663
AlwNI CAGNNNCTG 2 cut(s) 155, 871
Ama87I CYCGRG 1 cut(s) 875
AoxI GGCC 3 cut(s) 173, 282, 679
ApeKI GCWGC 3 cut(s) 641, 828, 865
ApoI RAATTY 2 cut(s) 374, 859
Asp700I GAANNNNTTC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 253, 283
AsuHPI GGTGA 2 cut(s) 28, 809
AvaI CYCGRG 1 cut(s) 875
AvaII GGWCC 1 cut(s) 253
BalI TGGCCA 1 cut(s) 681
BanI GGYRCC 1 cut(s) 910
BbvI GCAGC 3 cut(s) 628, 840, 877
BccI CCATC 4 cut(s) 430, 500, 671, 725
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciVI GTATCC 2 cut(s) 24, 808
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 211, 966
BfaI CTAG 2 cut(s) 1047, 1051
BfuI GTATCC 2 cut(s) 24, 808
BisI GCNGC 4 cut(s) 642, 829, 866, 914
BlsI GCNGC 4 cut(s) 643, 830, 867, 915
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 253, 283
BmiI GGNNCC 1 cut(s) 912
BmsI GCATC 2 cut(s) 877, 928
Bpu10I CCTNAGC 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 466, 793, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 989
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 838
BseDI CCNNGG 3 cut(s) 466, 793, 917
BseGI GGATG 3 cut(s) 445, 487, 511
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 838
BseMII CTCAG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 3 cut(s) 628, 840, 877
BseYI CCCAGC 2 cut(s) 692, 836
BshFI GGCC 3 cut(s) 175, 284, 681
BshNI GGYRCC 1 cut(s) 910
BsiHKCI CYCGRG 1 cut(s) 875
BsiSI CCGG 2 cut(s) 942, 990
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 211, 966
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 3 cut(s) 175, 284, 681
BsoBI CYCGRG 1 cut(s) 875
Bsp143I GATC 5 cut(s) 8, 409, 444, 520, 655
Bsp19I CCATGG 2 cut(s) 466, 793
BspACI CCGC 1 cut(s) 914
BspANI GGCC 3 cut(s) 175, 284, 681
BspCNI CTCAG 1 cut(s) 216
BspHI TCATGA 3 cut(s) 213, 382, 528
BspLI GGNNCC 1 cut(s) 912
BspPI GGATC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 910
BsrDI GCAATG 1 cut(s) 838
BsrFI RCCGGY 1 cut(s) 989
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 989
BssECI CCNNGG 3 cut(s) 466, 793, 917
BssMI GATC 5 cut(s) 8, 409, 444, 520, 655
BssT1I CCWWGG 3 cut(s) 466, 793, 917
Bst4CI ACNGT 2 cut(s) 629, 820
Bst6I CTCTTC 2 cut(s) 35, 572
BstAPI GCANNNNNTGC 2 cut(s) 114, 871
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 203, 664
BstDSI CCRYGG 2 cut(s) 466, 793
BstF5I GGATG 3 cut(s) 445, 487, 511
BstKTI GATC 5 cut(s) 11, 412, 447, 523, 658
BstMAI GTCTC 2 cut(s) 211, 966
BstMBI GATC 5 cut(s) 8, 409, 444, 520, 655
BstMWI GCNNNNNNNGC 2 cut(s) 114, 871
BstNSI RCATGY 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 628, 840, 877
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 1 cut(s) 652
BstYI RGATCY 1 cut(s) 655
BsuI GTATCC 2 cut(s) 24, 808
BsuRI GGCC 3 cut(s) 175, 284, 681
BtgI CCRYGG 2 cut(s) 466, 793
BtsCI GGATG 3 cut(s) 445, 487, 511
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 2 cut(s) 155, 871
CciI TCATGA 3 cut(s) 213, 382, 528
Cfr10I RCCGGY 1 cut(s) 989
Cfr13I GGNCC 2 cut(s) 253, 283
Csp6I GTAC 2 cut(s) 311, 633
CviAII CATG 8 cut(s) 27, 125, 214, 268, 383, 467, 529, 794
CviQI GTAC 2 cut(s) 311, 633
DdeI CTNAG 2 cut(s) 203, 664
DpnI GATC 5 cut(s) 10, 411, 446, 522, 657
DpnII GATC 5 cut(s) 8, 409, 444, 520, 655
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 2 cut(s) 35, 572
EarI CTCTTC 2 cut(s) 35, 572
Eco130I CCWWGG 3 cut(s) 466, 793, 917
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 875
EcoT14I CCWWGG 3 cut(s) 466, 793, 917
ErhI CCWWGG 3 cut(s) 466, 793, 917
FaeI CATG 8 cut(s) 30, 128, 217, 271, 386, 470, 532, 797
FatI CATG 8 cut(s) 26, 124, 213, 267, 382, 466, 528, 793
FauNDI CATATG 2 cut(s) 288, 1012
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 642, 829, 866, 914
FokI GGATG 3 cut(s) 452, 474, 518
Fsp4HI GCNGC 4 cut(s) 642, 829, 866, 914
FspBI CTAG 2 cut(s) 1047, 1051
GluI GCNGC 4 cut(s) 642, 829, 866, 914
GsaI CCCAGC 2 cut(s) 696, 840
HaeIII GGCC 3 cut(s) 175, 284, 681
HapII CCGG 2 cut(s) 942, 990
Hin1II CATG 8 cut(s) 30, 128, 217, 271, 386, 470, 532, 797
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 5 cut(s) 4, 262, 416, 557, 725
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 2 cut(s) 942, 990
HphI GGTGA 2 cut(s) 28, 809
Hpy166II GTNNAC 2 cut(s) 405, 774
Hpy188I TCNGA 4 cut(s) 206, 542, 730, 781
Hpy188III TCNNGA 9 cut(s) 48, 214, 224, 316, 383, 413, 424, 448, 529
Hpy8I GTNNAC 2 cut(s) 405, 774
HpyAV CCTTC 9 cut(s) 70, 71, 201, 234, 244, 325, 421, 878, 947
HpyCH4III ACNGT 2 cut(s) 629, 820
HpyCH4V TGCA 6 cut(s) 26, 108, 124, 292, 865, 1033
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 871
HpyF3I CTNAG 2 cut(s) 203, 664
Hsp92II CATG 8 cut(s) 30, 128, 217, 271, 386, 470, 532, 797
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 405
Kzo9I GATC 5 cut(s) 8, 409, 444, 520, 655
LmnI GCTCC 3 cut(s) 72, 97, 689
Lsp1109I GCAGC 3 cut(s) 628, 840, 877
LweI GCATC 2 cut(s) 877, 928
MaeI CTAG 2 cut(s) 1047, 1051
MaeIII GTNAC 1 cut(s) 263
MalI GATC 5 cut(s) 10, 411, 446, 522, 657
MboI GATC 5 cut(s) 8, 409, 444, 520, 655
MboII GAAGA 6 cut(s) 52, 170, 249, 331, 555, 589
MflI RGATCY 1 cut(s) 655
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 5 cut(s) 161, 357, 374, 859, 1025
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 2 cut(s) 271, 734
MmeI TCCRAC 2 cut(s) 802, 832
Mox20I TGGCCA 1 cut(s) 681
MroXI GAANNNNTTC 1 cut(s) 198
MscI TGGCCA 1 cut(s) 681
MseI TTAA 2 cut(s) 404, 1020
MslI CAYNNNNRTG 1 cut(s) 798
Msp20I TGGCCA 1 cut(s) 681
MspI CCGG 2 cut(s) 942, 990
Mva1269I GAATGC 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 114, 871
NcoI CCATGG 2 cut(s) 466, 793
NdeI CATATG 2 cut(s) 288, 1012
NdeII GATC 5 cut(s) 8, 409, 444, 520, 655
NlaIII CATG 8 cut(s) 30, 128, 217, 271, 386, 470, 532, 797
NlaIV GGNNCC 1 cut(s) 912
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PagI TCATGA 3 cut(s) 213, 382, 528
PctI GAATGC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 416, 557
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 4 cut(s) 643, 830, 867, 915
PleI GAGTC 2 cut(s) 270, 733
PpsI GAGTC 2 cut(s) 270, 733
PspFI CCCAGC 2 cut(s) 692, 836
PspN4I GGNNCC 1 cut(s) 912
PspPI GGNCC 2 cut(s) 253, 283
PstNI CAGNNNCTG 2 cut(s) 155, 871
PsuI RGATCY 1 cut(s) 655
RsaI GTAC 2 cut(s) 312, 634
RsaNI GTAC 2 cut(s) 311, 633
RseI CAYNNNNRTG 1 cut(s) 798
SaqAI TTAA 2 cut(s) 404, 1020
SatI GCNGC 4 cut(s) 642, 829, 866, 914
Sau3AI GATC 5 cut(s) 8, 409, 444, 520, 655
Sau96I GGNCC 2 cut(s) 253, 283
SchI GAGTC 2 cut(s) 271, 734
SfaNI GCATC 2 cut(s) 877, 928
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SphI GCATGC 1 cut(s) 128
Sse9I AATT 5 cut(s) 161, 357, 374, 859, 1025
SsiI CCGC 1 cut(s) 914
SspI AATATT 1 cut(s) 481
SspMI CTAG 2 cut(s) 1047, 1051
StyI CCWWGG 3 cut(s) 466, 793, 917
TaaI ACNGT 2 cut(s) 629, 820
TaqI TCGA 2 cut(s) 7, 49
TasI AATT 5 cut(s) 161, 357, 374, 859, 1025
TatI WGTACW 1 cut(s) 632
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 2 cut(s) 416, 557
Tru1I TTAA 2 cut(s) 404, 1020
Tru9I TTAA 2 cut(s) 404, 1020
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 3 cut(s) 641, 828, 865
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 6 cut(s) 104, 202, 263, 371, 897, 966
TspRI CASTG 1 cut(s) 559
Van91I CCANNNNNTGG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 2 cut(s) 374, 859
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 2 cut(s) 1047, 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.