Rw7G038040
MADS Family

MADS-box transcription factor PHERES 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016404
Physical Location & Seq
Reverse (-)
57739345 .. 57740404
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038040.1

Sequence Viewer

Length: 966 bp
ATGACTCGATCAAAGGTGAAACTTGCATGGATACAAAAGAAGAGTTCTCGAAAATCCACCTTCAAAAATAGGAGCGAAGGCTTGTTGATGAAAGTGGAGCAACTCTGCATTCTATGCGATTTGCATGCGTTCGTCATCATATACAACCCAGATACTGAAGAACTGACTGTATGGCCTAACCACCAAGAAGTGGAACAACTTCTGAGAAGGTTCATGAGACTTCCTGATTTCACACGAAGGAGGAAAATGAAGGACCAAGAGAGTCATATGGAGGAGAGAGTGGCCCATATGCAGGTGGAACAGACGAGGGTACTCAAGAAGAACAAAGAGATGGAACTAAACGATGTCATTGGTCAAATTGAGAGGAAAGGTAAATTTTTTCATGAGTTTAGCCACAAGGAGTTAGCTGATCTGGATTCTTTCTTGAAGGAAAAGATGGATGAGATCAAGAAGCTAATGGATTACCATGATCATAAGAATATTCCTCATCCAAGAGGAAAGAGAAAACAATCTGGGATAATGACAGAAACTTCTGGCAATAGTAGTATAATAGTTGCTAATAATATGGATCTACCCTTAGCAAGTAATGACGGCCATTGTGGAGCTGGGGGTATGGAGTGGGCATCTTTTGGAGTAGAGTCTGATGGAAATAGAAGTGAGCAGAAGAGAATAAATAATTTGGGGTTTACTTCTGATATGCCTTTCCATGGTGATGATATTTATTTGGATACTGTTGGAGGCAGCAATGCTGGGTATAATGATGTTGGAGGGAATTTGCTGCATCTGCCAGAGAATGAAGGTGGTATGGGGGTGCCGCCTTGGTTTCTTGGAGATAACGATGCCGGAAGTGATGAAGGGCTGCCTCCAGGTCTGTTTGGAGGTATAGACACCGGCAGTGATGACGGGCTTCCATATGATTTTAAGGAATTATTGCAAAGCCCTTTCCCTAGCCCTCATTCCCCATGA

Protein Analysis

321

Amino Acids

36.3

Weight (kDa)

5.73

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 52 2.1e-11 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 811
AccB7I CCANNNNNTGG 1 cut(s) 190
AciI CCGC 1 cut(s) 815
AclWI GGATC 1 cut(s) 576
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 2 cut(s) 374, 772
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 190, 292, 707
AgsI TTSAA 2 cut(s) 64, 427
AjnI CCWGG 1 cut(s) 865
AluBI AGCT 3 cut(s) 407, 454, 605
AluI AGCT 3 cut(s) 407, 454, 605
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 576
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 3 cut(s) 173, 282, 592
ApeKI GCWGC 3 cut(s) 741, 778, 859
ApoI RAATTY 2 cut(s) 374, 772
Asp700I GAANNNNTTC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 253, 283
AsuHPI GGTGA 2 cut(s) 28, 722
AvaII GGWCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 811
BbvI GCAGC 3 cut(s) 753, 765, 846
BccI CCATC 3 cut(s) 325, 430, 638
BceAI ACGGC 1 cut(s) 607
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 867
BciVI GTATCC 2 cut(s) 24, 721
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 948
BfuAI ACCTGC 1 cut(s) 283
BfuI GTATCC 2 cut(s) 24, 721
BisI GCNGC 4 cut(s) 742, 779, 815, 860
BlsI GCNGC 4 cut(s) 743, 780, 816, 861
Bme1390I CCNGG 1 cut(s) 867
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 253, 283
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 1 cut(s) 867
BmsI GCATC 3 cut(s) 632, 790, 829
BpmI CTGGAG 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 706, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 292, 707
Bse118I RCCGGY 1 cut(s) 890
Bse3DI GCAATG 1 cut(s) 751
BseBI CCWGG 1 cut(s) 867
BseDI CCNNGG 2 cut(s) 706, 818
BseGI GGATG 2 cut(s) 445, 487
BseLI CCNNNNNNNGG 3 cut(s) 190, 292, 707
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 3 cut(s) 753, 765, 846
BseYI CCCAGC 2 cut(s) 605, 749
BshFI GGCC 3 cut(s) 175, 284, 594
BshNI GGYRCC 1 cut(s) 811
BsiSI CCGG 2 cut(s) 843, 891
BslI CCNNNNNNNGG 3 cut(s) 190, 292, 707
BsmAI GTCTC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 3 cut(s) 175, 284, 594
Bsp143I GATC 5 cut(s) 8, 409, 444, 469, 568
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 1 cut(s) 815
BspANI GGCC 3 cut(s) 175, 284, 594
BspCNI CTCAG 1 cut(s) 195
BspHI TCATGA 2 cut(s) 213, 382
BspLI GGNNCC 1 cut(s) 813
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 1 cut(s) 576
BspT107I GGYRCC 1 cut(s) 811
BsrDI GCAATG 1 cut(s) 751
BsrFI RCCGGY 1 cut(s) 890
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 2 cut(s) 706, 818
BssMI GATC 5 cut(s) 8, 409, 444, 469, 568
BssT1I CCWWGG 2 cut(s) 706, 818
Bst2UI CCWGG 1 cut(s) 867
Bst4CI ACNGT 2 cut(s) 169, 733
Bst6I CTCTTC 2 cut(s) 35, 659
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 203, 577
BstDSI CCRYGG 1 cut(s) 706
BstF5I GGATG 2 cut(s) 445, 487
BstKTI GATC 5 cut(s) 11, 412, 447, 472, 571
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 5 cut(s) 8, 409, 444, 469, 568
BstMWI GCNNNNNNNGC 2 cut(s) 114, 784
BstNI CCWGG 1 cut(s) 867
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 865
BstV1I GCAGC 3 cut(s) 753, 765, 846
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuI GTATCC 2 cut(s) 24, 721
BsuRI GGCC 3 cut(s) 175, 284, 594
BtgI CCRYGG 1 cut(s) 706
BtsCI GGATG 2 cut(s) 445, 487
BtsI GCAGTG 1 cut(s) 901
BtsIMutI CAGTG 1 cut(s) 901
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 2 cut(s) 213, 382
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 2 cut(s) 253, 283
Csp6I GTAC 1 cut(s) 311
CviAII CATG 7 cut(s) 27, 125, 214, 383, 467, 707, 963
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 2 cut(s) 203, 577
DpnI GATC 5 cut(s) 10, 411, 446, 471, 570
DpnII GATC 5 cut(s) 8, 409, 444, 469, 568
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 2 cut(s) 35, 659
EarI CTCTTC 2 cut(s) 35, 659
Eco130I CCWWGG 2 cut(s) 706, 818
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 865
EcoT14I CCWWGG 2 cut(s) 706, 818
ErhI CCWWGG 2 cut(s) 706, 818
FaeI CATG 7 cut(s) 30, 128, 217, 386, 470, 710, 966
FatI CATG 7 cut(s) 26, 124, 213, 382, 466, 706, 962
FauNDI CATATG 3 cut(s) 267, 288, 913
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 4 cut(s) 742, 779, 815, 860
FokI GGATG 2 cut(s) 452, 474
Fsp4HI GCNGC 4 cut(s) 742, 779, 815, 860
FspBI CTAG 1 cut(s) 948
GluI GCNGC 4 cut(s) 742, 779, 815, 860
GsaI CCCAGC 2 cut(s) 609, 753
GsuI CTGGAG 1 cut(s) 849
HaeIII GGCC 3 cut(s) 175, 284, 594
HapII CCGG 2 cut(s) 843, 891
Hin1II CATG 7 cut(s) 30, 128, 217, 386, 470, 710, 966
HinfI GANTC 4 cut(s) 4, 262, 416, 638
HpaII CCGG 2 cut(s) 843, 891
HphI GGTGA 2 cut(s) 28, 722
Hpy166II GTNNAC 1 cut(s) 687
Hpy188I TCNGA 3 cut(s) 204, 643, 694
Hpy188III TCNNGA 8 cut(s) 48, 214, 224, 316, 383, 413, 424, 448
Hpy8I GTNNAC 1 cut(s) 687
HpyAV CCTTC 8 cut(s) 70, 71, 201, 231, 244, 421, 791, 848
HpyCH4III ACNGT 2 cut(s) 169, 733
HpyCH4V TGCA 6 cut(s) 26, 108, 124, 292, 781, 934
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 784
HpyF3I CTNAG 2 cut(s) 203, 577
Hsp92II CATG 7 cut(s) 30, 128, 217, 386, 470, 710, 966
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 5 cut(s) 8, 409, 444, 469, 568
LmnI GCTCC 3 cut(s) 72, 97, 602
Lsp1109I GCAGC 3 cut(s) 753, 765, 846
LweI GCATC 3 cut(s) 632, 790, 829
MaeI CTAG 1 cut(s) 948
MalI GATC 5 cut(s) 10, 411, 446, 471, 570
MboI GATC 5 cut(s) 8, 409, 444, 469, 568
MboII GAAGA 4 cut(s) 52, 170, 331, 676
MflI RGATCY 1 cut(s) 568
MluCI AATT 5 cut(s) 357, 374, 676, 772, 926
MlyI GAGTC 2 cut(s) 271, 647
MmeI TCCRAC 2 cut(s) 715, 745
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 1 cut(s) 921
MslI CAYNNNNRTG 1 cut(s) 711
MspI CCGG 2 cut(s) 843, 891
MspR9I CCNGG 1 cut(s) 867
Mva1269I GAATGC 1 cut(s) 108
MvaI CCWGG 1 cut(s) 867
MwoI GCNNNNNNNGC 2 cut(s) 114, 784
NcoI CCATGG 1 cut(s) 706
NdeI CATATG 3 cut(s) 267, 288, 913
NdeII GATC 5 cut(s) 8, 409, 444, 469, 568
NlaIII CATG 7 cut(s) 30, 128, 217, 386, 470, 710, 966
NlaIV GGNNCC 1 cut(s) 813
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PagI TCATGA 2 cut(s) 213, 382
PaqCI CACCTGC 1 cut(s) 283
PctI GAATGC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 416
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 4 cut(s) 743, 780, 816, 861
PleI GAGTC 2 cut(s) 270, 646
PpsI GAGTC 2 cut(s) 270, 646
Psp6I CCWGG 1 cut(s) 865
PspFI CCCAGC 2 cut(s) 605, 749
PspGI CCWGG 1 cut(s) 865
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 2 cut(s) 253, 283
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 1 cut(s) 921
SatI GCNGC 4 cut(s) 742, 779, 815, 860
Sau3AI GATC 5 cut(s) 8, 409, 444, 469, 568
Sau96I GGNCC 2 cut(s) 253, 283
SchI GAGTC 2 cut(s) 271, 647
ScrFI CCNGG 1 cut(s) 867
SfaNI GCATC 3 cut(s) 632, 790, 829
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SphI GCATGC 1 cut(s) 128
Sse9I AATT 5 cut(s) 357, 374, 676, 772, 926
SsiI CCGC 1 cut(s) 815
SspI AATATT 1 cut(s) 481
SspMI CTAG 1 cut(s) 948
StyD4I CCNGG 1 cut(s) 865
StyI CCWWGG 2 cut(s) 706, 818
TaaI ACNGT 2 cut(s) 169, 733
TaqI TCGA 2 cut(s) 7, 49
TasI AATT 5 cut(s) 357, 374, 676, 772, 926
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TscAI CASTG 1 cut(s) 901
TseI GCWGC 3 cut(s) 741, 778, 859
TspDTI ATGAA 6 cut(s) 104, 202, 263, 371, 810, 867
TspRI CASTG 1 cut(s) 901
Van91I CCANNNNNTGG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 2 cut(s) 374, 772
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.