Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016404

Physical Location & Seq

Genomic Coordinates Forward (+)

12534855 .. 12535922

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G092900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGACAAGGAGAAAGGTGAAACTTGCATGGATTGTGAATGATGCTGCTAGGAAAGCCACCTTCAGAAAGAGGAGGGCAAACCTGTTGAAAAAACTGAGAGAGTTGACCATTTTATGTGATGTGAATGGCTTGATCATCGTTTATGGGCCCGATAGCGACGAGCCTGTTGTGTGGCCTGAACGCCCAGTGGTTCAAGAACTACTGGCAAGGTTTCTCAGCATACCGGAATTCGAGCGGTGGAAGAAGATGACGAACCAAGAGACTTACCTCAAGGATAGTGCAGCCAAAATACAAGAACAAATAAGGAAGATTCAGAAGAAGAACAATGAGATGGAGATGAATTATATCATGCACCAGATTCTTAAAAATGGTAAGCCACTAGATGCATTTCACGCTAGAGAGCTAACTGATTTGGTTTTTTTTATGAAGGATAAGATGAAAGAGATCGAGAAACGGATCGAAACTAAAGAGATGGATCCTAATGTTCCACCATGTGCTCCTCCACATAATGATGAATGGAACGCTACAGAGTCTTTGTTTAATTATCTGCACAAGGAAAAGACGAAGCAAATGGAGAACATTGTTGGAGCTAGCAGTAGTGTGAGGAGTGATATGGGACTGCCCGAATATACCTATTTTGGTAGTTCTGTTAATCCTGCAAACGGGATAGGGTTTCCTAGCGTGAACTTTGAAGGCAATTACAGCTATGGCGGAAGTGATTTAGGGCTTCCCAAGCAAATTCATAACATTGCTGGTTCGAGTAGCAGTGTTAGGCATTATGGAACTGATTTGGGGATGCCTCACGTGAATTATGGAGGAAGTTCTACTGGTGGAAGTGAGATGAGGCATGACATCCTTCCACATTATTATGGGGATAATATTGTAGGCAATACTGGATGGGGTACTAGAGAAACCAATGCTGGATATGGTGATAGACTAGGGCATCTGCCCCAACAGCTGAGCGTCGAAGGTGATAAGGGAAGTGGATTAGGGTTGCCTGCTGGATTGTTTGGAGGTAACAACGGTGGAAGTGATGCAGGGCTTCCCTATGATGTTACCAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

356

Amino Acids

39.65

Weight (kDa)

7.75

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016404)

Species	Orthologous Gene IDs
malus_domestica	MD12G1079200.v1.1 MD13G1281000.v1.1 MD14G1041400.v1.1
prunus_persica	Prupe.1G168600_v2.0.a1 Prupe.1G168700_v2.0.a1 Prupe.1G168900_v2.0.a1 Prupe.7G092800_v2.0.a1 Prupe.7G092900_v2.0.a1
rosa_multiflora	Rmu_co8399941.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224350 Rroxscaffold_6G00405530
rosa_samantha	Rh7BG429600 Rh7CG476700 Rh7DG445900
rosa_wichuraiana	Rw7G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	235
AciI	CCGC	2 cut(s)	235, 711
AclWI	GGATC	3 cut(s)	464, 470, 483
AcsI	RAATTY	2 cut(s)	227, 738
AcuI	CTGAAG	1 cut(s)	46
AcvI	CACGTG	1 cut(s)	805
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	904
AfiI	CCNNNNNNNGG	1 cut(s)	662
AgsI	TTSAA	3 cut(s)	88, 194, 692
AluBI	AGCT	4 cut(s)	403, 590, 705, 958
AluI	AGCT	4 cut(s)	403, 590, 705, 958
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	464, 470, 483
AoxI	GGCC	2 cut(s)	146, 173
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	44, 281
ApoI	RAATTY	2 cut(s)	227, 738
AspS9I	GGNCC	2 cut(s)	146, 147
AsuHPI	GGTGA	3 cut(s)	28, 941, 983
AsuNHI	GCTAGC	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	150
BbrPI	CACGTG	1 cut(s)	805
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	2 cut(s)	31, 293
BccI	CCATC	3 cut(s)	325, 466, 891
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	7 cut(s)	48, 380, 396, 591, 678, 906, 938
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	2 cut(s)	45, 282
BlpI	GCTNAGC	1 cut(s)	959
BlsI	GCNGC	2 cut(s)	46, 283
BmgT120I	GGNCC	2 cut(s)	146, 147
BmiI	GGNNCC	2 cut(s)	148, 477
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	5 cut(s)	31, 373, 786, 952, 1024
BmtI	GCTAGC	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	959
BpuEI	CTTGAG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	805
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse1I	ACTGG	4 cut(s)	185, 207, 832, 898
Bse3DI	GCAATG	1 cut(s)	747
BseGI	GGATG	3 cut(s)	801, 852, 902
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	3 cut(s)	86, 229, 950
BseNI	ACTGG	4 cut(s)	185, 207, 832, 898
BseRI	GAGGAG	3 cut(s)	85, 489, 619
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	31, 293
BsgI	GTGCAG	2 cut(s)	300, 533
BshFI	GGCC	2 cut(s)	148, 175
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	148, 175
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	150, 499
Bsp143I	GATC	4 cut(s)	132, 444, 456, 475
Bsp1720I	GCTNAGC	1 cut(s)	959
BspACI	CCGC	2 cut(s)	235, 711
BspANI	GGCC	2 cut(s)	148, 175
BspCNI	CTCAG	3 cut(s)	87, 228, 951
BspLI	GGNNCC	2 cut(s)	148, 477
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	3 cut(s)	464, 470, 483
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	4 cut(s)	185, 207, 832, 898
BssMI	GATC	4 cut(s)	132, 444, 456, 475
Bst4CI	ACNGT	1 cut(s)	1025
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	592, 999
BstDEI	CTNAG	3 cut(s)	95, 215, 959
BstF5I	GGATG	3 cut(s)	801, 852, 902
BstKTI	GATC	4 cut(s)	135, 447, 459, 478
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	4 cut(s)	132, 444, 456, 475
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 392, 702, 733, 955
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	31, 293
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	148, 175
BtsCI	GGATG	3 cut(s)	801, 852, 902
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	2 cut(s)	192, 772
Cac8I	GCNNGC	2 cut(s)	592, 999
Cfr13I	GGNCC	2 cut(s)	146, 147
CseI	GACGC	1 cut(s)	952
Csp6I	GTAC	1 cut(s)	903
CviAII	CATG	4 cut(s)	27, 349, 492, 848
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	3 cut(s)	95, 215, 959
DpnI	GATC	4 cut(s)	134, 446, 458, 477
DpnII	GATC	4 cut(s)	132, 444, 456, 475
DraIII	CACNNNGTG	1 cut(s)	494
EciI	GGCGGA	1 cut(s)	726
Eco24I	GRGCYC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	46
Eco72I	CACGTG	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	4 cut(s)	30, 352, 495, 851
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	4 cut(s)	26, 348, 491, 847
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	45, 282
FokI	GGATG	3 cut(s)	808, 839, 909
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	45, 282
FspBI	CTAG	7 cut(s)	48, 380, 396, 591, 678, 906, 938
GluI	GCNGC	2 cut(s)	45, 282
HaeIII	GGCC	2 cut(s)	148, 175
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	952
Hin1II	CATG	4 cut(s)	30, 352, 495, 851
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	3 cut(s)	310, 358, 530
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	3 cut(s)	28, 941, 983
Hpy166II	GTNNAC	2 cut(s)	105, 685
Hpy188I	TCNGA	2 cut(s)	65, 315
Hpy188III	TCNNGA	2 cut(s)	194, 448
Hpy8I	GTNNAC	2 cut(s)	105, 685
Hpy99I	CGWCG	2 cut(s)	161, 968
HpyAV	CCTTC	5 cut(s)	70, 421, 686, 866, 962
HpyCH4III	ACNGT	1 cut(s)	1025
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	7 cut(s)	26, 281, 352, 386, 550, 659, 1037
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 392, 702, 733, 955
HpyF3I	CTNAG	3 cut(s)	95, 215, 959
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	4 cut(s)	30, 352, 495, 851
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	132, 444, 456, 475
LmnI	GCTCC	2 cut(s)	502, 587
Lsp1109I	GCAGC	2 cut(s)	31, 293
LweI	GCATC	5 cut(s)	31, 373, 786, 952, 1024
MaeI	CTAG	7 cut(s)	48, 380, 396, 591, 678, 906, 938
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	2 cut(s)	1016, 1054
MalI	GATC	4 cut(s)	134, 446, 458, 477
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	4 cut(s)	132, 444, 456, 475
MboII	GAAGA	5 cut(s)	253, 256, 319, 328, 331
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	150, 499
MluCI	AATT	6 cut(s)	227, 340, 541, 697, 738, 808
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	9 cut(s)	63, 66, 278, 510, 597, 809, 810, 837, 1007
Mph1103I	ATGCAT	1 cut(s)	388
MseI	TTAA	3 cut(s)	363, 540, 651
MslI	CAYNNNNRTG	2 cut(s)	510, 867
MspA1I	CMGCKG	1 cut(s)	958
MspI	CCGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	53, 392, 702, 733, 955
NdeII	GATC	4 cut(s)	132, 444, 456, 475
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	4 cut(s)	30, 352, 495, 851
NlaIV	GGNNCC	2 cut(s)	148, 477
NsiI	ATGCAT	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	310, 358
PkrI	GCNGC	2 cut(s)	46, 283
PleI	GAGTC	1 cut(s)	538
PmaCI	CACGTG	1 cut(s)	805
PmlI	CACGTG	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	538
Ppu21I	YACGTR	1 cut(s)	805
PspCI	CACGTG	1 cut(s)	805
PspN4I	GGNNCC	2 cut(s)	148, 477
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	2 cut(s)	146, 147
PsuI	RGATCY	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	958
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
RseI	CAYNNNNRTG	2 cut(s)	510, 867
SaqAI	TTAA	3 cut(s)	363, 540, 651
SatI	GCNGC	2 cut(s)	45, 282
Sau3AI	GATC	4 cut(s)	132, 444, 456, 475
Sau96I	GGNCC	2 cut(s)	146, 147
SchI	GAGTC	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	150, 499
SfaNI	GCATC	5 cut(s)	31, 373, 786, 952, 1024
SfcI	CTRYAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	2 cut(s)	510, 867
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	6 cut(s)	227, 340, 541, 697, 738, 808
SsiI	CCGC	2 cut(s)	235, 711
SspI	AATATT	1 cut(s)	880
SspMI	CTAG	7 cut(s)	48, 380, 396, 591, 678, 906, 938
TaaI	ACNGT	1 cut(s)	1025
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	5 cut(s)	231, 447, 459, 758, 966
TasI	AATT	6 cut(s)	227, 340, 541, 697, 738, 808
TfiI	GAWTC	2 cut(s)	310, 358
Tru1I	TTAA	3 cut(s)	363, 540, 651
Tru9I	TTAA	3 cut(s)	363, 540, 651
TscAI	CASTG	2 cut(s)	192, 772
TseI	GCWGC	2 cut(s)	44, 281
TspDTI	ATGAA	5 cut(s)	353, 440, 452, 528, 731
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	2 cut(s)	192, 772
XapI	RAATTY	2 cut(s)	227, 738
XspI	CTAG	7 cut(s)	48, 380, 396, 591, 678, 906, 938
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.