Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Reverse (-)

8575545 .. 8583844

Gene Structure 8300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1075700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCGTGTTTCTAGACTTTACAAAGATGAACAGGAGCTGGAAACCTACATACGCTCAGATCTCTATGGTACCTGCAACCAAATCACGAATTGCTCAAATCCAAAAATCAAGGGAGCAGTAGTTTTTCATGATCAAGGTCCTCAATCATTTGATTATAGCATACGTCTTAACCACACATGGGCTTTCTCGGGCTTTGATGTCAAATCCATCATGGACGTGAATGGTCCCTACCTCAATGACCTGGAACTCGGCGTAAATGCTGTACCGACCATGCAGTACAGCTCCAGTGGATTTTTAACTCTCCAGCAAGTACTGGATTCGTTTATTATTTTTGTGGCCCAACAATCTGACACCAAAGATATAGAACTTTCTTCATCGGCATCACTGTCCTCTGGTGAACCTTCCTTTGTCAGCTTTCCATGGATGCTTTACGGCCCATCAAACATTCAAATAGTGCCGTTTCCAAGTCGTGAATACACTGATGATGAGTTCCAGTCCATCATAAAAACTGTGATGGGTGTATTGTATCTTCTGGGATTCCTCTACCCAATTTCTCGGTTGATCAGCTATTCAGTGTTTGAGAAGTGGTGGCTGTCCAATGAGAAGTTTTCAGCAATTGAATCGTTTGTCCTCGCATCATTTCCTGGTGCAATATTCCAGGGGTTTAATGGCTTGAGTGCTAAATATCAGTTGCCATATCGACAGGGCCTCTCGCTTGCAGATGTCTTTGGGCACCTTGAACGGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

251

Amino Acids

28.29

Weight (kDa)

4.96

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R1_ABCA1	PF23321	199 - 250	1.5e-06	ABCA1-like, C-terminal R1 regulatory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	80
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	2 cut(s)	68, 732
AfaI	GTAC	4 cut(s)	70, 264, 278, 312
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	449, 620, 740
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	3 cut(s)	240, 643, 657
AluBI	AGCT	4 cut(s)	37, 282, 414, 567
AluI	AGCT	4 cut(s)	37, 282, 414, 567
AlwNI	CAGNNNCTG	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	336, 433, 706
Asp718I	GGTACC	1 cut(s)	68
AspS9I	GGNCC	5 cut(s)	137, 224, 337, 434, 706
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	2 cut(s)	137, 224
BaeGI	GKGCMC	1 cut(s)	735
BanI	GGYRCC	2 cut(s)	68, 732
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
BccI	CCATC	4 cut(s)	215, 445, 506, 508
BceAI	ACGGC	2 cut(s)	442, 448
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	3 cut(s)	242, 645, 659
BclI	TGATCA	2 cut(s)	130, 561
BfaI	CTAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	58
BmcAI	AGTACT	1 cut(s)	312
Bme1390I	CCNGG	3 cut(s)	242, 645, 659
Bme18I	GGWCC	2 cut(s)	137, 224
BmeT110I	CYCGRG	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	5 cut(s)	137, 224, 337, 434, 706
BmiI	GGNNCC	3 cut(s)	70, 226, 734
BmrFI	CCNGG	3 cut(s)	242, 645, 659
BmsI	GCATC	3 cut(s)	389, 414, 644
BpmI	CTGGAG	2 cut(s)	268, 287
BpuEI	CTTGAG	1 cut(s)	694
BsaJI	CCNNGG	2 cut(s)	419, 658
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	285, 318, 493
BseBI	CCWGG	3 cut(s)	242, 645, 659
BseDI	CCNNGG	2 cut(s)	419, 658
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	285, 318, 493
BseSI	GKGCMC	1 cut(s)	735
BshFI	GGCC	3 cut(s)	338, 435, 708
BshNI	GGYRCC	2 cut(s)	68, 732
BsiHKCI	CYCGRG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	338, 435, 708
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	58, 130, 561
Bsp19I	CCATGG	1 cut(s)	419
BspANI	GGCC	3 cut(s)	338, 435, 708
BspCNI	CTCAG	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	70, 226, 734
BspMI	ACCTGC	1 cut(s)	80
BspT107I	GGYRCC	2 cut(s)	68, 732
BsrI	ACTGG	3 cut(s)	285, 318, 493
BssECI	CCNNGG	2 cut(s)	419, 658
BssMI	GATC	3 cut(s)	58, 130, 561
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	3 cut(s)	242, 645, 659
Bst4CI	ACNGT	2 cut(s)	387, 511
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	429
BstKTI	GATC	3 cut(s)	61, 133, 564
BstMBI	GATC	3 cut(s)	58, 130, 561
BstNI	CCWGG	3 cut(s)	242, 645, 659
BstSCI	CCNGG	3 cut(s)	240, 643, 657
BstSLI	GKGCMC	1 cut(s)	735
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	338, 435, 708
BtgI	CCRYGG	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	4 cut(s)	292, 383, 477, 579
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	717
CaiI	CAGNNNCTG	1 cut(s)	37
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	5 cut(s)	137, 224, 337, 434, 706
Csp6I	GTAC	4 cut(s)	69, 263, 277, 311
CviAII	CATG	5 cut(s)	128, 177, 211, 271, 420
CviQI	GTAC	4 cut(s)	69, 263, 277, 311
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	3 cut(s)	60, 132, 563
DpnII	GATC	3 cut(s)	58, 130, 561
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	137, 224
Eco88I	CYCGRG	1 cut(s)	187
EcoO109I	RGGNCCY	2 cut(s)	137, 706
EcoRII	CCWGG	3 cut(s)	240, 643, 657
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	5 cut(s)	131, 180, 214, 274, 423
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	5 cut(s)	127, 176, 210, 270, 419
FbaI	TGATCA	2 cut(s)	130, 561
FokI	GGATG	1 cut(s)	436
FspBI	CTAG	1 cut(s)	12
GsuI	CTGGAG	2 cut(s)	268, 287
HaeIII	GGCC	3 cut(s)	338, 435, 708
Hin1II	CATG	5 cut(s)	131, 180, 214, 274, 423
HinfI	GANTC	3 cut(s)	317, 537, 620
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	58, 349
Hpy188III	TCNNGA	4 cut(s)	12, 85, 128, 470
Hpy8I	GTNNAC	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	2 cut(s)	387, 511
HpyCH4IV	ACGT	2 cut(s)	163, 216
HpyCH4V	TGCA	4 cut(s)	75, 274, 650, 719
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	2 cut(s)	163, 216
Hsp92II	CATG	5 cut(s)	131, 180, 214, 274, 423
KpnI	GGTACC	1 cut(s)	72
Ksp22I	TGATCA	2 cut(s)	130, 561
Kzo9I	GATC	3 cut(s)	58, 130, 561
LmnI	GCTCC	3 cut(s)	34, 113, 287
LweI	GCATC	3 cut(s)	389, 414, 644
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	2 cut(s)	163, 216
MalI	GATC	3 cut(s)	60, 132, 563
MboI	GATC	3 cut(s)	58, 130, 561
MboII	GAAGA	2 cut(s)	363, 521
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	3 cut(s)	88, 549, 615
MnlI	CCTC	6 cut(s)	150, 242, 400, 551, 641, 719
MseI	TTAA	3 cut(s)	168, 296, 666
MslI	CAYNNNNRTG	1 cut(s)	215
MspR9I	CCNGG	3 cut(s)	242, 645, 659
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	3 cut(s)	242, 645, 659
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	3 cut(s)	58, 130, 561
NlaIII	CATG	5 cut(s)	131, 180, 214, 274, 423
NlaIV	GGNNCC	3 cut(s)	70, 226, 734
NmeAIII	GCCGAG	1 cut(s)	228
PagI	TCATGA	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	317, 537, 620
PpuMI	RGGWCCY	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	3 cut(s)	240, 643, 657
PspGI	CCWGG	3 cut(s)	240, 643, 657
PspN4I	GGNNCC	3 cut(s)	70, 226, 734
PspPI	GGNCC	5 cut(s)	137, 224, 337, 434, 706
PspPPI	RGGWCCY	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	4 cut(s)	70, 264, 278, 312
RsaNI	GTAC	4 cut(s)	69, 263, 277, 311
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	168, 296, 666
Sau3AI	GATC	3 cut(s)	58, 130, 561
Sau96I	GGNCC	5 cut(s)	137, 224, 337, 434, 706
ScaI	AGTACT	1 cut(s)	312
ScrFI	CCNGG	3 cut(s)	242, 645, 659
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	3 cut(s)	389, 414, 644
SinI	GGWCC	2 cut(s)	137, 224
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
Sse9I	AATT	3 cut(s)	88, 549, 615
SspI	AATATT	1 cut(s)	654
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	3 cut(s)	240, 643, 657
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	387, 511
TaiI	ACGT	2 cut(s)	166, 219
TaqI	TCGA	1 cut(s)	700
TasI	AATT	3 cut(s)	88, 549, 615
TatI	WGTACW	2 cut(s)	276, 310
TfiI	GAWTC	3 cut(s)	317, 537, 620
Tru1I	TTAA	3 cut(s)	168, 296, 666
Tru9I	TTAA	3 cut(s)	168, 296, 666
TscAI	CASTG	4 cut(s)	292, 390, 484, 579
TspDTI	ATGAA	3 cut(s)	42, 116, 363
TspRI	CASTG	4 cut(s)	292, 390, 484, 579
VpaK11BI	GGWCC	2 cut(s)	137, 224
XbaI	TCTAGA	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	665
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.