Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Reverse (-)

17510511 .. 17511203

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0198800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTACCATTTTAATCTGGCACTCTTGGCCAAACAAGGTTGGCGGTTGATTCAAAATCCAAACTCTATTATTGCTAGACTTCTTAAAGTAAAGTATTTTCCTAATTGCTCTTTTATGGAGGCTGAAGTCAAGGGGGGTGACTCCTACACCTGGAGAAGCATCATTTCGGTGAGGGAAGTGTTCAAGAAAGGACTAAGATTTCAGGTGGGTGATGGGAGTGGTATTTCGGTTTGGAAGGATCCCTGGTTAGCGTTACCACTTTCTTTCAAACCTTTTTCTCCCATAATGGAAGGGACGAAGGACTTTATGGTTGCAGACCTCATAGATGGGGAGAATAGAGAATGGTTACTAGACTTGTTGGATGAACTTTTCACAAATGGGGAGGTTGAGAATATTGCTTCTATTCCATTAAGTCTACGGGGAGCGGAAGACAGATTAATTTGGCATTTTGACCGGAGAGGTCTTTACAATGTTAAAAGTGGCTACTATGTTTTTAATAAGGCACAAACTGCTTTGGAAAAGACTACTGCCTCTATGGCCGTGGAGGGTGGAGCTTGGCGGCGGTACTGGCAGATGATATGGGGAGCTAATGTGCCTCCAAAGGTGAGAGTTTTTATGTGGAGGCTACTCAGCAAAGAGATTTTGCCTACTAAGAGTGCTTTGGCTAAGAAGATCGAAGATCCCTATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

230

Amino Acids

26.5

Weight (kDa)

9.32

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	4 cut(s)	43, 425, 559, 562
AclWI	GGATC	3 cut(s)	233, 246, 674
AcoI	YGGCCR	2 cut(s)	27, 537
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	5, 566
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	53, 184, 268
AjnI	CCWGG	2 cut(s)	149, 242
AluBI	AGCT	2 cut(s)	554, 587
AluI	AGCT	2 cut(s)	554, 587
AlwI	GGATC	3 cut(s)	233, 246, 674
AoxI	GGCC	2 cut(s)	27, 537
AseI	ATTAAT	1 cut(s)	437
AsuHPI	GGTGA	4 cut(s)	149, 181, 221, 616
BalI	TGGCCA	1 cut(s)	29
BamHI	GGATCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	435
BccI	CCATC	2 cut(s)	206, 320
BceAI	ACGGC	1 cut(s)	524
BciT130I	CCWGG	2 cut(s)	151, 244
BfaI	CTAG	2 cut(s)	75, 350
BglI	GCCNNNNNGGC	1 cut(s)	536
BisI	GCNGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	561
Bme1390I	CCNGG	2 cut(s)	151, 244
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	151, 244
BmsI	GCATC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	242, 540
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	572
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	2 cut(s)	151, 244
BseDI	CCNNGG	2 cut(s)	242, 540
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	643
BseNI	ACTGG	1 cut(s)	572
BshFI	GGCC	2 cut(s)	29, 539
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	29, 539
Bsp143I	GATC	3 cut(s)	238, 672, 679
BspACI	CCGC	4 cut(s)	43, 425, 559, 562
BspANI	GGCC	2 cut(s)	29, 539
BspCNI	CTCAG	1 cut(s)	642
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	3 cut(s)	233, 246, 674
BsrBI	CCGCTC	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	242, 540
BssMI	GATC	3 cut(s)	238, 672, 679
Bst2UI	CCWGG	2 cut(s)	151, 244
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstDEI	CTNAG	4 cut(s)	194, 629, 651, 666
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	3 cut(s)	241, 675, 682
BstMBI	GATC	3 cut(s)	238, 672, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 509, 536, 568
BstNI	CCWGG	2 cut(s)	151, 244
BstSCI	CCNGG	2 cut(s)	149, 242
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	2 cut(s)	238, 679
BstYI	RGATCY	2 cut(s)	238, 679
BsuRI	GGCC	2 cut(s)	29, 539
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	4, 565
CviAII	CATG	1 cut(s)	690
CviJI	RGCY	8 cut(s)	29, 122, 483, 539, 554, 587, 625, 665
CviKI_1	RGCY	8 cut(s)	29, 122, 483, 539, 554, 587, 625, 665
CviQI	GTAC	2 cut(s)	4, 565
DdeI	CTNAG	4 cut(s)	194, 629, 651, 666
DpnI	GATC	3 cut(s)	240, 674, 681
DpnII	GATC	3 cut(s)	238, 672, 679
EaeI	YGGCCR	2 cut(s)	27, 537
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	149, 242
FaeI	CATG	1 cut(s)	693
FaiI	YATR	9 cut(s)	116, 284, 308, 323, 489, 536, 580, 617, 691
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	1 cut(s)	689
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	560
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	560
FspBI	CTAG	2 cut(s)	75, 350
GluI	GCNGC	1 cut(s)	560
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	29, 539
HapII	CCGG	1 cut(s)	454
Hin1II	CATG	1 cut(s)	693
HinfI	GANTC	2 cut(s)	49, 140
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	4 cut(s)	149, 181, 221, 616
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	229, 284, 292
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 509, 536, 568
HpyF3I	CTNAG	4 cut(s)	194, 629, 651, 666
Hsp92II	CATG	1 cut(s)	693
Kzo9I	GATC	3 cut(s)	238, 672, 679
LmnI	GCTCC	3 cut(s)	422, 551, 584
LpnPI	CCDG	8 cut(s)	2, 136, 163, 188, 229, 256, 467, 553
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	75, 350
MaeIII	GTNAC	3 cut(s)	137, 252, 345
MalI	GATC	3 cut(s)	240, 674, 681
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	3 cut(s)	238, 672, 679
MboII	GAAGA	3 cut(s)	440, 682, 689
MflI	RGATCY	2 cut(s)	238, 679
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	2 cut(s)	103, 438
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	9 cut(s)	112, 165, 329, 376, 452, 538, 541, 606, 615
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	6 cut(s)	12, 84, 410, 437, 474, 495
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	29
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	2 cut(s)	151, 244
MvaI	CCWGG	2 cut(s)	151, 244
MwoI	GCNNNNNNNGC	4 cut(s)	26, 509, 536, 568
NdeII	GATC	3 cut(s)	238, 672, 679
NlaIII	CATG	1 cut(s)	693
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	149, 242
PspGI	CCWGG	2 cut(s)	149, 242
PspN4I	GGNNCC	1 cut(s)	240
PsuI	RGATCY	2 cut(s)	238, 679
RsaI	GTAC	2 cut(s)	5, 566
RsaNI	GTAC	2 cut(s)	4, 565
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	6 cut(s)	12, 84, 410, 437, 474, 495
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	3 cut(s)	238, 672, 679
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	151, 244
SfaNI	GCATC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	103, 438
SsiI	CCGC	4 cut(s)	43, 425, 559, 562
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	75, 350
StyD4I	CCNGG	2 cut(s)	149, 242
TaqI	TCGA	1 cut(s)	675
TasI	AATT	2 cut(s)	103, 438
TauI	GCSGC	1 cut(s)	562
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	6 cut(s)	12, 84, 410, 437, 474, 495
Tru9I	TTAA	6 cut(s)	12, 84, 410, 437, 474, 495
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	378
VspI	ATTAAT	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	2 cut(s)	75, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.