Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Forward (+)

27702157 .. 27725515

Gene Structure 23359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5631 bp

ATGGGGACCGGAACGAGACAGCTCAAGGCTATGCTTCGGAAGAATTGGCTTCTCAAAATTCGTCACCCTTTCGTCACCTGCGCTGAGATATTACTCCCCACTGTAGTAATGTTGATGCTCATAGCTGTAAGGACACGTGTTGATACGCAGATTCACCCTTCACAGCCATATATCCGGAAAGGGATGTTGGTGGAAGTGGGCAAAGGAATATCCCCTAATTTTGAGCAAGTGTTGGAATTACTATTGAAGAAGGAAGAGATTTTGGCTTTTGCACCAGACACAGAAGAGACAAGGTCAATGATCAACGTGATGTCGATGAAATTTCCTCTCTTGAAGCGTGTTTCTAGAGTTTACAAAGATGAGCAGGAGCTGGAAACCTATATACGCTCAAATCTCTATGGTACCTGCAATCAAATCATGAATTGCTCGAACCCAAAAATCAAAGGAGCAGTAGTATTTCACGATCAAGGTCCTCAACTTTTCGATTATAGCATACGACTTAATCACACATGGGCTTTCTCGGGATTTCCTGATGTTAAATCGATCATGGACACAAATGGCCCTTACTTAAATGACTTGGAACTGGGCGTGAATACTGTACCGACAATGCAATACAGCTGCAGTGGATTTTTAACTCTCCAGCAAGCACTAGACTCTTTTATAATTTTTGCAGCCCAGCAATCGGATACCAGAAACATAGAACTTCCTACTTCGCTGTCCTTTAGCACACCTTCCTCTCTCAAAGTTCCTTGGACGCGATATGGTCCGTCAAACATCCGTATAGTCCCGTTTCCGACTCGTGAATACACTGATGATGAGTTCCAGTCCATCATAAAAAGTGTCATGGGTGTACTGTATCTTTTGGGATTTCTCTATCCAATTTCGCGCTTGATCAGCTATTCTGTGTTTGAGAAGGAACAAAAGATAAGAGAAGGTCTTTCTATGATGGGGCTGAAAGATGGGGTATTCCATCTATCGTGGTTCATTGCATATGCTTTGCAGTTCGCAGTTTCTTCTCTTATTATTACAGTTTGCACGATGGATAGCCTTTTCAAGTATAGTGACAAGTCAGTGGTGTTCATTTACTTCTTCTTTTTCGGAATAAGCGCGATTATGCTGTCATTTTTAATCTCTACATTCTTCGAACGAGCAAAGACAGCAGTTGCGGTTGGGACCCTTGCTTTCTTGGGTGCTTTTTTCCCATACTACTCTGTCAATGACGAGGCTGTTCCTATGATTCTAAAGGTCATTGCCTCTCTGCTTTCACCAACGGCTTTTGCTCTGGGGTCAATCAACTTTGCTGATTATGAGCGTGCTCATGTTGGCCTTCGTTGGAGCAATATATGGCGGGCATCATCCGGAGTGAATTTTTCAGTCTGTCTCCTGATGATGTTGCTCGATGCGTTGCTGTACTGTGTAATTGGTCTTTACCTAGATAAGGTACTTCCGAGAGAGAATGGAGTTAGGTATCCCTGGAACTTCATTTTTCAGAAGTGCTTTTGGAAGAATCCAAATATTAACAAACACCACAACTCCAGTCCAGAAGTTCATATTCGTGACAAGGTATCCCAGAAGGCAATGTTTTCTCGGAAAGAAAATGCTAAAGCTGCTGTGGAAGCAATAACCTTCGATATGAGACAACAAGAGCTTGACCATAGATGCATCCAAATAAGGAATCTGCATAAGGTTTATGCTAGTAAAAAGGGGAAATGTTGTGCTGTCAACTCATTACAGCTCACCATGTATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAAAGCACAACGATATCAATGCTTGTTGGCCTTCTTTGTCCTACTTCAGGGGATGCTATGGTGTTTGGAAAAAATATTATGACAGACATGGAGGAGATACGGAAAGAGTTGGGTGTATGCCCTCAGCATGATATCCTTTTTCCAGAATTGACCGTGAAGGAGCACTTGGAAATATTTGCTATATTGAAAGGTGTGCAGGAAGATTTTCTGAACAGCGTTGTTATTGATATGGTTGACCAAGTAGGGTTGGCCGATAAAATCAACACTGCTGTTATGGCTCTTTCTGGAGGAATGAAGAGGAAGTTGTCACTTGGAATTGCACTAATTGGAAATAGTAAGGTTATAATTCTTGATGAACCTACTAGTGGAATGGATCCATACTCTATGCGCTTGACTTGGCAATTAATAAAAAAGATTAGAAAGGGCAGGATAGTATTACTGACAACACACTCAATGGATGAAGCTGAGGCACTTGGAGATCGCATAGCCATCATGGCCAATGGTTCTTTGAAATGCTGCGGAAGTTCCCTTTTCTTGAAGCATCAGTATGGGGTTGGTTATACTCTAACTTTAGTGAAGTCTGCACCCACTGCCTCTATGGCTGCTGATATTGTTTTCCGCCATATCCCATCGGCAACGTGTGTGAGTGAGGTTGGAACTGAGATTTCCTTTAAGCTTCCATTGGCATCCTCAACATCCTTCGAAAGTATGTTTAGAGAAATTGAGAGTTGCATGGGATCATCCACATCAAACTTAGAAACAAGTTGTGATGAGAAGGACTATATTGGCATTGAAAGTTATGGCATATCTGTCACAACTTTGGAGGAGGTGTTCCTGAGGGTTGCAGGATGCGATTATGACGAAGCTGCTTGTTTTGACCAGAAGAATGGTCCACTGTGCCCTGAGTCTCTGATTTCTCAAACTTCTCATGATCCTACCCACAAACAGATTCTTCACTCGAAGAAATCTTTTGCTTATTATAAAGAGATTCTTGGGGTCTTATTTACAATGGTGGGAAGAGCCTGTGGTTTAATTTTTGCTACAGTGTTAAGTTTCTTAAACTTCTTAGGTGTGCAATGCTGTGGCTGTTGTATCATTTCAAGGTCAACATTTTGGAGGCATTCTAAAGTATTATTCATAAAGAGGGCAATATCTGCCCGCAGAGACCGTAAAACAATTGTTTTCCAGCTTGTAATTCCTGCAGTTTTCTTATTTTTTGGTCTTTTATTTCTCAAGCTCAAGCCACATCCTGATCAGGAGTCTGTTACCTTCACAACTTCACATTTTAATCCACTATTACGTGGTGGTGGTGGTGGTGGTCCAATTCCTTTTGATCTATCCCGGCCTATTGCACAGGAGGTTGCAGAATACATAGAAGGGGGTTGGATACAAACCTTCAAACCTAGTGGGTATAACTTCCCCAACTCAGAGAAGGCATTGAATGATGCAATTGAGGTAGCAGGGGAAACTCTGGGACCTGCTTTACTTTCAATGAGTGAATTTTTGATGTCCAGCTTTAATGAATCTTACCAGTCAAGGTATGGCGCAGTTGTGATGGATGATCAGAGTGATGATGGGAGTTTAGGGTACACTGTGCTACACAACAGTTCCTGTCAGCATGCTGCCCCAACCTTTATCAATTTAGTAAATGCTGCAATTCTTCGTCTTGCTTCTCGTAATAAGAATGTGACAATTCAAACACGCAATCACCCTTTGCCAATGACAGAAAGTCAACATCTGCAACGGCATGATTTGGATGCTTTCTCTGCTGCAGTTATTGTTAGTATCGCCTTCTCCTTCATTCCTGCATCATTTGCTGTTCCTATAGTGAAGGAACGTGAAGTAAAAGCTAAACACCAACAACTTATTAGTGGAATTAACTGCATTGTGATACATCCTTCCTCAGGTTTCCATACTGTCATATTGGACTTCTACATACATTGGGACTTCATCAGCTTCCTCTTTCCTTCATCTTTTGCCATAGTTCTTTTTTACATATTTGGTCTGGACCAGTTTATTGGAAGGGGATGTTTACTGTCGACTGTCGTCATGTTTTTAGCATACGGATTAGCGATTGCATCATCAACATACTGCCTTACGTTTTTCTTTTCTGATCACACTATGGCTCAGAATGTGGTTCTCTTGGTCCACTTTTTCACGGGACTCATTCTTATGGTTATCTCATTCATTATGGGGCTTATAAAGACGACGACAAGTGCAAATTCTTTTCTTAAGAACTTTTTCAGATTATCTCCAGGATTTTGCTTTGCTGACGGACTTGCTTCACTGGCTCTTCTACGTCAAGATATGAAAAATAAGAGCAATAAGGCCTTCGATTGGAATGTTACTGGTGGCTCAATCTGCTACCTTTGTATTGAGAGCATTTGTTACTTCCTTTTGGCACTTGGTCTTGAAATCTTGCCTTTCAATAAATTGACACTAGCCACACTCAAGGAGTGGTGGAAGAGTATTAGAAGTATCCCACCTAGCACTTCAAGTTATCGAGAACCCCTTCTGACTTCTTCCGCAGAATCTGTCACTCTGGACCTTGATGAGGACACAGATGTGAAGGCAGAAAGAACTAGGGTACTTTCAGGTTCCATTGACAATGCCATCATCTACTTGCGTAATCTTCGTAAGGTGTATCCAGGAGGACAGCAGCATGCTACAAAGGTTGCGGTACATTCATTGACTTTTTCAGTTCAAGAAGGGGAATGTTTCGGTTTTTTAGGAACAAATGGAGCTGGGAAGACCACTACTCTGTCTATGTTGACTGGTGAGGAATCTCCTACGGATGGGACTGCCTGTATATTTGGCAAGGATATTTCTTCCAATCCCAAGGCTGCTCGTCAACATATTGGGTTTTGCCCACAGTTTGATGCTCTGTTAGAATATTTAACTGTTCAAGAGCATCTTGAGCTTTATGCCACGATAAAAGGAGTACCAGATAATAAGATGGCTGAGGTTGTAATGGAAAAGTTGGTGGAGTTTGACTTGTTAAAGCATGCCGGCAAGCCATCATTTTCCCTCAGTGGGGGAAACAAGCGAAAATTATCTGTCGCAATTGCTATGATTGGAGATCCTCCTATAGTTATTCTTGATGAACCATCAACAGGTATGGATCCAATTGCCAAAAGATTCATGTGGGAAGTGATATCTCGTTTATCGACCAGACGAGGAAAGACAGCAGTGATACTGACTACCCATAGTATGAATGAAGCTCAAGCTCTGTGCACCCGTATCGGAATCATGGTTGGAGGCCAATTACGGTGCATTGGAAGTCCCCAGCATTTAAAAACTCGATTTGGAAATCATCTTGAGCTAGAGGTTAAACCTATTGAAGTCAGCTCTGTGGACTTGGACAAGCTTTGCCGAGTTATCCAAGAAAGGCTCTCATATGTTCCTTCTCATCCAATGAGCTTACTTGATGGCCTTGAAGTCTGCATTGGTGCCACTGACTCCATTGTGGCAGAAAATGCATCGGTGGCAGAGATTAGTTTATCGCGAGAAATGATAATTATGATTGGACAATGGCTTGGGAATGAAGAAAGAATAAAGCCGCTTATATCTCCAACACCACTTTCAGATGGGGTGCTTGGTGAACAGTTATTTGAGCAGTTAGATCGAGATGGTGGAATACCATTGCCAGTATTTTCTGAATGGTGGCTGTTCAATGACAAGTTTTCAGCAATCGATTCATTTGTCCTATCATCATTTACTGGTGCAATGTTCGAGGGAATGAATGGCTTGAGTGTTAAATATCAGTTGCCTTGTGGTCCGCACCTCTCTCTTGCTGATGTATTTGGACACCTTGAACGGAAAAGGTTGCTGCTTGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

1876

Amino Acids

208.71

Weight (kDa)

6.93

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	211 - 476	2e-19	ABC-2 family transporter protein
ABC_tran	PF00005	575 - 718	6.2e-30	ABC transporter
ABC2_membrane_3	PF12698	987 - 1398	4.2e-29	ABC-2 family transporter protein
ABC_tran	PF00005	1491 - 1633	4.8e-28	ABC transporter
AAA_21	PF13304	1602 - 1668	7.6e-09	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	662, 2132, 2769, 3989
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	3 cut(s)	86, 413, 3274
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	2 cut(s)	401, 5237
AccI	GTMKAC	1 cut(s)	3827
AccII	CGCG	4 cut(s)	757, 886, 1109, 5293
AccIII	TCCGGA	2 cut(s)	174, 1358
AciI	CCGC	9 cut(s)	1166, 1348, 2307, 2407, 2947, 4314, 4466, 5348, 5567
AclWI	GGATC	7 cut(s)	2156, 2169, 2533, 2714, 4862, 4904, 4917
AcoI	YGGCCR	2 cut(s)	2037, 2283
AcsI	RAATTY	5 cut(s)	57, 320, 1366, 3287, 4009
AcuI	CTGAAG	1 cut(s)	1818
AcvI	CACGTG	1 cut(s)	137
AfaI	GTAC	9 cut(s)	403, 600, 852, 1412, 1443, 3377, 4377, 4470, 4731
AflII	CTTAAG	1 cut(s)	4019
AflIII	ACRYGT	3 cut(s)	134, 136, 2426
AhdI	GACNNNNNGTC	1 cut(s)	3516
AhlI	ACTAGT	1 cut(s)	2150
AjnI	CCWGG	3 cut(s)	1472, 4042, 4435
AjuI	GAANNNNNNNTTGG	8 cut(s)	170, 202, 1937, 1969, 5217, 5249, 5353, 5385
AleI	CACNNNNGTG	1 cut(s)	4352
AloI	GAACNNNNNNTCC	2 cut(s)	2603, 2635
Alw21I	GWGCWC	3 cut(s)	1318, 1953, 5024
Alw26I	GTCTC	6 cut(s)	10, 281, 1385, 1630, 2700, 2946
Alw44I	GTGCAC	1 cut(s)	5020
AlwI	GGATC	7 cut(s)	2156, 2169, 2533, 2714, 4862, 4904, 4917
AlwNI	CAGNNNCTG	3 cut(s)	370, 3399, 4322
Ama87I	CYCGRG	1 cut(s)	520
Aor13HI	TCCGGA	2 cut(s)	174, 1358
AoxI	GGCC	9 cut(s)	559, 1324, 1816, 2037, 2283, 3131, 4116, 5047, 5218
ApaLI	GTGCAC	1 cut(s)	5020
ApoI	RAATTY	5 cut(s)	57, 320, 1366, 3287, 4009
AseI	ATTAAT	1 cut(s)	2192
Asp700I	GAANNNNTTC	3 cut(s)	1992, 4028, 4299
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	5 cut(s)	83, 888, 1109, 2178, 3335
AsuC2I	CCSGG	1 cut(s)	3130
AsuHPI	GGTGA	8 cut(s)	56, 67, 146, 1257, 1729, 3488, 4577, 5399
AsuII	TTCGAA	2 cut(s)	1143, 2490
AvaI	CYCGRG	1 cut(s)	520
AxyI	CCTNAGG	2 cut(s)	2624, 3691
BaeGI	GKGCMC	2 cut(s)	2690, 5024
BalI	TGGCCA	1 cut(s)	2285
BamHI	GGATCC	2 cut(s)	2161, 4909
BanI	GGYRCC	2 cut(s)	401, 5237
BauI	CACGAG	1 cut(s)	798
BbrPI	CACGTG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	4544
Bbv12I	GWGCWC	3 cut(s)	1318, 1953, 5024
BbvCI	CCTCAGC	3 cut(s)	1911, 2253, 4749
BceAI	ACGGC	2 cut(s)	1287, 3548
BcgI	CGANNNNNNTGC	6 cut(s)	1789, 1823, 5011, 5045, 5393, 5427
BciT130I	CCWGG	3 cut(s)	1474, 4044, 4437
BciVI	GTATCC	6 cut(s)	679, 1479, 1576, 3168, 4277, 4443
BclI	TGATCA	5 cut(s)	300, 891, 3040, 3349, 3901
BcnI	CCSGG	1 cut(s)	3130
BcoDI	GTCTC	6 cut(s)	10, 281, 1385, 1630, 2700, 2946
BcuI	ACTAGT	1 cut(s)	2150
BfmI	CTRYAG	7 cut(s)	102, 619, 2829, 2988, 3558, 3612, 4875
BfrI	CTTAAG	1 cut(s)	4019
BfuAI	ACCTGC	3 cut(s)	86, 413, 3274
BfuI	GTATCC	6 cut(s)	679, 1479, 1576, 3168, 4277, 4443
BglI	GCCNNNNNGGC	2 cut(s)	2282, 2387
Bme1390I	CCNGG	4 cut(s)	1474, 3130, 4044, 4437
BmeRI	GACNNNNNGTC	1 cut(s)	3516
BmeT110I	CYCGRG	1 cut(s)	520
BmiI	GGNNCC	9 cut(s)	7, 403, 1174, 1175, 2163, 3264, 4387, 4911, 5239
BmrFI	CCNGG	4 cut(s)	1474, 3130, 4044, 4437
BmrI	ACTGGG	1 cut(s)	593
BmuI	ACTGGG	1 cut(s)	593
BoxI	GACNNNNGTC	1 cut(s)	3833
BpiI	GAAGAC	1 cut(s)	4544
BpmI	CTGGAG	4 cut(s)	623, 1519, 2094, 4026
Bpu10I	CCTNAGC	3 cut(s)	1911, 2253, 4749
Bpu14I	TTCGAA	2 cut(s)	1143, 2490
BpuEI	CTTGAG	8 cut(s)	8, 3005, 3011, 4223, 4724, 4995, 5126, 5557
BpuMI	CCSGG	1 cut(s)	3130
Bsa29I	ATCGAT	2 cut(s)	542, 5481
BsaAI	YACGTR	2 cut(s)	137, 3089
BsaI	GGTCTC	1 cut(s)	2946
BsaJI	CCNNGG	3 cut(s)	749, 1472, 4626
BsaWI	WCCGGW	3 cut(s)	8, 174, 1358
BsaXI	ACNNNNNCTCC	6 cut(s)	438, 468, 1517, 1547, 2603, 2633
Bse118I	RCCGGY	1 cut(s)	4796
Bse21I	CCTNAGG	2 cut(s)	2624, 3691
Bse3DI	GCAATG	6 cut(s)	984, 1248, 1584, 2870, 5429, 5520
BseAI	TCCGGA	2 cut(s)	174, 1358
BseBI	CCWGG	3 cut(s)	1474, 4044, 4437
BseCI	ATCGAT	2 cut(s)	542, 5481
BseDI	CCNNGG	3 cut(s)	749, 1472, 4626
BseMI	GCAATG	6 cut(s)	984, 1248, 1584, 2870, 5429, 5520
BseRI	GAGGAG	2 cut(s)	1895, 2627
BseSI	GKGCMC	2 cut(s)	2690, 5024
BseYI	CCCAGC	3 cut(s)	675, 4532, 5073
BsgI	GTGCAG	2 cut(s)	2003, 2355
Bsh1236I	CGCG	4 cut(s)	757, 886, 1109, 5293
BshFI	GGCC	9 cut(s)	561, 1326, 1818, 2039, 2285, 3133, 4118, 5049, 5220
BshNI	GGYRCC	2 cut(s)	401, 5237
BshVI	ATCGAT	2 cut(s)	542, 5481
BsiHKAI	GWGCWC	3 cut(s)	1318, 1953, 5024
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	5 cut(s)	9, 175, 1359, 3130, 4797
BslFI	GGGAC	8 cut(s)	19, 770, 1186, 3276, 3746, 3963, 4600, 5055
BsmAI	GTCTC	6 cut(s)	10, 281, 1385, 1630, 2700, 2946
BsmFI	GGGAC	8 cut(s)	19, 770, 1186, 3276, 3746, 3963, 4600, 5055
BsmI	GAATGC	1 cut(s)	2908
BsnI	GGCC	9 cut(s)	561, 1326, 1818, 2039, 2285, 3133, 4118, 5049, 5220
Bso31I	GGTCTC	1 cut(s)	2946
BsoBI	CYCGRG	1 cut(s)	520
Bsp119I	TTCGAA	2 cut(s)	1143, 2490
Bsp1286I	GDGCHC	4 cut(s)	1318, 1953, 2690, 5024
Bsp13I	TCCGGA	2 cut(s)	174, 1358
Bsp68I	TCGCGA	1 cut(s)	5293
BspACI	CCGC	9 cut(s)	1166, 1348, 2307, 2407, 2947, 4314, 4466, 5348, 5567
BspANI	GGCC	9 cut(s)	561, 1326, 1818, 2039, 2285, 3133, 4118, 5049, 5220
BspDI	ATCGAT	2 cut(s)	542, 5481
BspEI	TCCGGA	2 cut(s)	174, 1358
BspFNI	CGCG	4 cut(s)	757, 886, 1109, 5293
BspHI	TCATGA	2 cut(s)	417, 2716
BspLI	GGNNCC	9 cut(s)	7, 403, 1174, 1175, 2163, 3264, 4387, 4911, 5239
BspMAI	CTGCAG	3 cut(s)	623, 2992, 3562
BspMI	ACCTGC	3 cut(s)	86, 413, 3274
BspPI	GGATC	7 cut(s)	2156, 2169, 2533, 2714, 4862, 4904, 4917
BspQI	GCTCTTC	3 cut(s)	1770, 2800, 4086
BspT104I	TTCGAA	2 cut(s)	1143, 2490
BspT107I	GGYRCC	2 cut(s)	401, 5237
BspTI	CTTAAG	1 cut(s)	4019
BspTNI	GGTCTC	1 cut(s)	2946
BsrDI	GCAATG	6 cut(s)	984, 1248, 1584, 2870, 5429, 5520
BsrFI	RCCGGY	1 cut(s)	4796
BssAI	RCCGGY	1 cut(s)	4796
BssECI	CCNNGG	3 cut(s)	749, 1472, 4626
BssSI	CACGAG	1 cut(s)	798
BssT1I	CCWWGG	2 cut(s)	749, 4626
Bst2BI	CACGAG	1 cut(s)	798
Bst2UI	CCWGG	3 cut(s)	1474, 4044, 4437
Bst6I	CTCTTC	7 cut(s)	249, 279, 1770, 2078, 2800, 4086, 4247
BstAFI	CTTAAG	1 cut(s)	4019
BstAPI	GCANNNNNTGC	4 cut(s)	2378, 2942, 3602, 5264
BstBAI	YACGTR	2 cut(s)	137, 3089
BstBI	TTCGAA	2 cut(s)	1143, 2490
BstC8I	GCNNGC	9 cut(s)	645, 1314, 1350, 2947, 3408, 4452, 4794, 4798, 4802
BstENI	CCTNNNNNAGG	4 cut(s)	1436, 1833, 3690, 4340
BstFNI	CGCG	4 cut(s)	757, 886, 1109, 5293
BstHHI	GCGC	5 cut(s)	83, 888, 1109, 2178, 3335
BstMAI	GTCTC	6 cut(s)	10, 281, 1385, 1630, 2700, 2946
BstNI	CCWGG	3 cut(s)	1474, 4044, 4437
BstNSI	RCATGY	3 cut(s)	3410, 4454, 4796
BstPAI	GACNNNNGTC	1 cut(s)	3833
BstSCI	CCNGG	4 cut(s)	1472, 3128, 4042, 4435
BstSFI	CTRYAG	7 cut(s)	102, 619, 2829, 2988, 3558, 3612, 4875
BstSLI	GKGCMC	2 cut(s)	2690, 5024
BstUI	CGCG	4 cut(s)	757, 886, 1109, 5293
BstV2I	GAAGAC	1 cut(s)	4544
BstX2I	RGATCY	3 cut(s)	2161, 4867, 4909
BstXI	CCANNNNNNTGG	2 cut(s)	2675, 3806
BstYI	RGATCY	3 cut(s)	2161, 4867, 4909
Bsu15I	ATCGAT	2 cut(s)	542, 5481
Bsu36I	CCTNAGG	2 cut(s)	2624, 3691
BsuI	GTATCC	6 cut(s)	679, 1479, 1576, 3168, 4277, 4443
BsuRI	GGCC	9 cut(s)	561, 1326, 1818, 2039, 2285, 3133, 4118, 5049, 5220
BsuTUI	ATCGAT	2 cut(s)	542, 5481
BtsI	GCAGTG	4 cut(s)	628, 2052, 2376, 4983
BtuMI	TCGCGA	1 cut(s)	5293
BveI	ACCTGC	3 cut(s)	86, 413, 3274
Cac8I	GCNNGC	9 cut(s)	645, 1314, 1350, 2947, 3408, 4452, 4794, 4798, 4802
CaiI	CAGNNNCTG	3 cut(s)	370, 3399, 4322
CciI	TCATGA	2 cut(s)	417, 2716
CfoI	GCGC	5 cut(s)	83, 888, 1109, 2178, 3335
Cfr10I	RCCGGY	1 cut(s)	4796
ClaI	ATCGAT	2 cut(s)	542, 5481
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	9 cut(s)	402, 599, 851, 1411, 1442, 3376, 4376, 4469, 4730
CspCI	CAANNNNNGTGG	2 cut(s)	3175, 3210
CviQI	GTAC	9 cut(s)	402, 599, 851, 1411, 1442, 3376, 4376, 4469, 4730
DraI	TTTAAA	1 cut(s)	5082
DriI	GACNNNNNGTC	1 cut(s)	3516
EaeI	YGGCCR	2 cut(s)	2037, 2283
Eam1104I	CTCTTC	7 cut(s)	249, 279, 1770, 2078, 2800, 4086, 4247
Eam1105I	GACNNNNNGTC	1 cut(s)	3516
EarI	CTCTTC	7 cut(s)	249, 279, 1770, 2078, 2800, 4086, 4247
EciI	GGCGGA	1 cut(s)	2396
Eco130I	CCWWGG	2 cut(s)	749, 4626
Eco147I	AGGCCT	1 cut(s)	4118
Eco31I	GGTCTC	1 cut(s)	2946
Eco32I	GATATC	3 cut(s)	1803, 1921, 4944
Eco57I	CTGAAG	1 cut(s)	1818
Eco72I	CACGTG	1 cut(s)	137
Eco81I	CCTNAGG	2 cut(s)	2624, 3691
Eco88I	CYCGRG	1 cut(s)	520
EcoNI	CCTNNNNNAGG	4 cut(s)	1436, 1833, 3690, 4340
EcoO109I	RGGNCCY	3 cut(s)	470, 1173, 3263
EcoRII	CCWGG	3 cut(s)	1472, 4042, 4435
EcoRV	GATATC	3 cut(s)	1803, 1921, 4944
EcoT14I	CCWWGG	2 cut(s)	749, 4626
EcoT22I	ATGCAT	2 cut(s)	1664, 5269
ErhI	CCWWGG	2 cut(s)	749, 4626
FalI	AAGNNNNNCTT	6 cut(s)	1937, 1969, 2763, 2795, 4686, 4718
FaqI	GGGAC	8 cut(s)	19, 770, 1186, 3276, 3746, 3963, 4600, 5055
FauI	CCCGC	2 cut(s)	1341, 2954
FauNDI	CATATG	2 cut(s)	991, 5185
FbaI	TGATCA	5 cut(s)	300, 891, 3040, 3349, 3901
FblI	GTMKAC	1 cut(s)	3827
GlaI	GCGC	5 cut(s)	82, 887, 1108, 2177, 3334
GsaI	CCCAGC	3 cut(s)	679, 4536, 5077
GsuI	CTGGAG	4 cut(s)	623, 1519, 2094, 4026
HaeIII	GGCC	9 cut(s)	561, 1326, 1818, 2039, 2285, 3133, 4118, 5049, 5220
HapII	CCGG	5 cut(s)	9, 175, 1359, 3130, 4797
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	5 cut(s)	83, 888, 1109, 2178, 3335
Hin6I	GCGC	5 cut(s)	81, 886, 1107, 2176, 3333
HinP1I	GCGC	5 cut(s)	81, 886, 1107, 2176, 3333
HincII	GTYRAC	7 cut(s)	1723, 2023, 2895, 3521, 3828, 4560, 4640
HindII	GTYRAC	7 cut(s)	1723, 2023, 2895, 3521, 3828, 4560, 4640
HindIII	AAGCTT	2 cut(s)	2462, 5153
HpaII	CCGG	5 cut(s)	9, 175, 1359, 3130, 4797
HphI	GGTGA	8 cut(s)	56, 67, 146, 1257, 1729, 3488, 4577, 5399
Hpy99I	CGWCG	1 cut(s)	4000
HpyCH4IV	ACGT	7 cut(s)	136, 306, 2426, 3088, 3625, 3887, 4087
HpySE526I	ACGT	7 cut(s)	136, 306, 2426, 3088, 3625, 3887, 4087
HspAI	GCGC	5 cut(s)	81, 886, 1107, 2176, 3333
KflI	GGGWCCC	1 cut(s)	1173
Kpn2I	TCCGGA	2 cut(s)	174, 1358
KpnI	GGTACC	1 cut(s)	405
KroI	GCCGGC	1 cut(s)	4796
KroNI	GCCGGC	1 cut(s)	4798
Ksp22I	TGATCA	5 cut(s)	300, 891, 3040, 3349, 3901
LguI	GCTCTTC	3 cut(s)	1770, 2800, 4086
LmnI	GCTCC	6 cut(s)	367, 446, 1335, 1781, 1948, 4529
MaeII	ACGT	7 cut(s)	136, 306, 2426, 3088, 3625, 3887, 4087
MfeI	CAATTG	4 cut(s)	2964, 3237, 4851, 4914
MflI	RGATCY	3 cut(s)	2161, 4867, 4909
MhlI	GDGCHC	4 cut(s)	1318, 1953, 2690, 5024
MlsI	TGGCCA	1 cut(s)	2285
MluNI	TGGCCA	1 cut(s)	2285
MlyI	GAGTC	6 cut(s)	647, 790, 2702, 3056, 3945, 5240
MmeI	TCCRAC	7 cut(s)	213, 818, 1313, 2422, 3152, 5023, 5384
Mox20I	TGGCCA	1 cut(s)	2285
Mph1103I	ATGCAT	2 cut(s)	1664, 5269
MroI	TCCGGA	2 cut(s)	174, 1358
MroNI	GCCGGC	1 cut(s)	4796
MroXI	GAANNNNTTC	3 cut(s)	1992, 4028, 4299
MscI	TGGCCA	1 cut(s)	2285
MslI	CAYNNNNRTG	4 cut(s)	1554, 2334, 3959, 4352
Msp20I	TGGCCA	1 cut(s)	2285
MspA1I	CMGCKG	1 cut(s)	618
MspCI	CTTAAG	1 cut(s)	4019
MspI	CCGG	5 cut(s)	9, 175, 1359, 3130, 4797
MspR9I	CCNGG	4 cut(s)	1474, 3130, 4044, 4437
MunI	CAATTG	4 cut(s)	2964, 3237, 4851, 4914
Mva1269I	GAATGC	1 cut(s)	2908
MvaI	CCWGG	3 cut(s)	1474, 4044, 4437
MvnI	CGCG	4 cut(s)	757, 886, 1109, 5293
NaeI	GCCGGC	1 cut(s)	4798
NciI	CCSGG	1 cut(s)	3130
NdeI	CATATG	2 cut(s)	991, 5185
NgoMIV	GCCGGC	1 cut(s)	4796
NlaIV	GGNNCC	9 cut(s)	7, 403, 1174, 1175, 2163, 3264, 4387, 4911, 5239
NmeAIII	GCCGAG	1 cut(s)	5186
NmuCI	GTSAC	8 cut(s)	62, 73, 1061, 1556, 2094, 2599, 3475, 4324
NruI	TCGCGA	1 cut(s)	5293
NsiI	ATGCAT	2 cut(s)	1664, 5269
NspI	RCATGY	3 cut(s)	3410, 4454, 4796
NspV	TTCGAA	2 cut(s)	1143, 2490
OliI	CACNNNNGTG	1 cut(s)	4352
PaeI	GCATGC	3 cut(s)	3410, 4454, 4796
PagI	TCATGA	2 cut(s)	417, 2716
PaqCI	CACCTGC	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	4118
PciSI	GCTCTTC	3 cut(s)	1770, 2800, 4086
PctI	GAATGC	1 cut(s)	2908
PdiI	GCCGGC	1 cut(s)	4798
PdmI	GAANNNNTTC	3 cut(s)	1992, 4028, 4299
PflFI	GACNNNGTC	1 cut(s)	292
PfoI	TCCNGGA	2 cut(s)	4042, 4435
PleI	GAGTC	6 cut(s)	647, 790, 2701, 3055, 3945, 5240
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
PpsI	GAGTC	6 cut(s)	647, 790, 2701, 3055, 3945, 5240
Ppu21I	YACGTR	2 cut(s)	137, 3089
PpuMI	RGGWCCY	3 cut(s)	470, 1173, 3263
PshAI	GACNNNNGTC	1 cut(s)	3833
PshBI	ATTAAT	1 cut(s)	2192
PsiI	TTATAA	4 cut(s)	662, 2132, 2769, 3989
Psp5II	RGGWCCY	3 cut(s)	470, 1173, 3263
Psp6I	CCWGG	3 cut(s)	1472, 4042, 4435
PspCI	CACGTG	1 cut(s)	137
PspFI	CCCAGC	3 cut(s)	675, 4532, 5073
PspGI	CCWGG	3 cut(s)	1472, 4042, 4435
PspN4I	GGNNCC	9 cut(s)	7, 403, 1174, 1175, 2163, 3264, 4387, 4911, 5239
PspPPI	RGGWCCY	3 cut(s)	470, 1173, 3263
PstI	CTGCAG	3 cut(s)	623, 2992, 3562
PstNI	CAGNNNCTG	3 cut(s)	370, 3399, 4322
PsuI	RGATCY	3 cut(s)	2161, 4867, 4909
PsyI	GACNNNGTC	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	618
RruI	TCGCGA	1 cut(s)	5293
RsaI	GTAC	9 cut(s)	403, 600, 852, 1412, 1443, 3377, 4377, 4470, 4731
RsaNI	GTAC	9 cut(s)	402, 599, 851, 1411, 1442, 3376, 4376, 4469, 4730
RseI	CAYNNNNRTG	4 cut(s)	1554, 2334, 3959, 4352
SalI	GTCGAC	1 cut(s)	3826
SapI	GCTCTTC	3 cut(s)	1770, 2800, 4086
SchI	GAGTC	6 cut(s)	647, 790, 2702, 3056, 3945, 5240
ScrFI	CCNGG	4 cut(s)	1474, 3130, 4044, 4437
SduI	GDGCHC	4 cut(s)	1318, 1953, 2690, 5024
SfcI	CTRYAG	7 cut(s)	102, 619, 2829, 2988, 3558, 3612, 4875
SfuI	TTCGAA	2 cut(s)	1143, 2490
SmiMI	CAYNNNNRTG	4 cut(s)	1554, 2334, 3959, 4352
SmlI	CTYRAG	9 cut(s)	23, 3020, 3026, 4019, 4238, 4703, 5010, 5105, 5536
SmoI	CTYRAG	9 cut(s)	23, 3020, 3026, 4019, 4238, 4703, 5010, 5105, 5536
SpeI	ACTAGT	1 cut(s)	2150
SphI	GCATGC	3 cut(s)	3410, 4454, 4796
SseBI	AGGCCT	1 cut(s)	4118
SsiI	CCGC	9 cut(s)	1166, 1348, 2307, 2407, 2947, 4314, 4466, 5348, 5567
SspI	AATATT	4 cut(s)	1516, 1864, 1962, 4682
StuI	AGGCCT	1 cut(s)	4118
StyD4I	CCNGG	4 cut(s)	1472, 3128, 4042, 4435
StyI	CCWWGG	2 cut(s)	749, 4626
TaiI	ACGT	7 cut(s)	139, 309, 2429, 3091, 3628, 3890, 4090
TatI	WGTACW	2 cut(s)	850, 1410
TauI	GCSGC	1 cut(s)	5350
TseFI	GTSAC	8 cut(s)	62, 73, 1061, 1556, 2094, 2599, 3475, 4324
Tsp45I	GTSAC	8 cut(s)	62, 73, 1061, 1556, 2094, 2599, 3475, 4324
TspGWI	ACGGA	7 cut(s)	756, 767, 1903, 3867, 4077, 4595, 5620
Tth111I	GACNNNGTC	1 cut(s)	292
Vha464I	CTTAAG	1 cut(s)	4019
VneI	GTGCAC	1 cut(s)	5020
VspI	ATTAAT	1 cut(s)	2192
XagI	CCTNNNNNAGG	4 cut(s)	1436, 1833, 3690, 4340
XapI	RAATTY	5 cut(s)	57, 320, 1366, 3287, 4009
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	3 cut(s)	3410, 4454, 4796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2383, 3326
XmiI	GTMKAC	1 cut(s)	3827
XmnI	GAANNNNTTC	3 cut(s)	1992, 4028, 4299
Zsp2I	ATGCAT	2 cut(s)	1664, 5269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.