Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Forward (+)

22075458 .. 22100259

Gene Structure 24802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023331

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5421 bp

ATGGGGACCGGAACGAGACAGCTGAAGGCTATGCTTCGCAAGAATTGGCTTCTCAAAATTCGTCACCCTTTCGTCACCTGCGCTGAGATATTACTCCCTACTGTAGTAATGTTGATGCTCATAGCTGTAAGGACACGTGTTGATACGCAGATTCACCCTTCACAGCCATATATCCGGAAAGGGATGTTGGTGGAAGTGGGCAAAGGAATATCCCCTAATTTTGAGCAAGTGTTGGAATTACTATTGAAGAAGGAAGAGATTTTGGCTTTTGCACCTGACACAGAAGAGACAAGGTCAATGATCAACGTGATGTCGATGAAATTTCCTCTCTTGAAGCGTGTTTCTAGAGTTTACAAGGATGAGCAGGAGCTGGAAACCTATATACGCTCAGATCTCTATGGTACCTGCAATCAAATCACGAATTGCTCGAACCCAAAAATCAAAGGAGCAGTAGTATTTCACGATCAAGGTCCTCAACTTTTCGATTATAGCATACGACTTAATCACACATGGGCTTTCTCGGGATTTCCTGATGTTAAATCGATCATGGACACAAATGGCCCTTACTTAAATGACTTGGAACTGGGCATGAATACTGTACCGACAATGCAATACAGCTGCAGTGGATTTTTAACTCTCCAGCAAGCACTAGACTCTTTTATAATTTTTGCGGCCCAGCAATCGGATGCCAGGAATATAGAACTTCCTACTTCGCTGTCCTCAAGCACACCTTCCTCTCTCAAAGTTCCATGGACGCGATATGGTCCATCAAACATCCGTATAGTCCCGTTTCCAACTCGTGAATACACTGATGATGAGTTCCAGTCCATCATAAAAAGTGTCATGGGTGTACTGTATCTTTTGGGATTTCTCTATCCAATTTCGCGCCTGATCAGTTATTCTGTGTTTGAGAAGGAACAAAAGATAAGAGAAGGTCTTTATATGATGGGGCTGAAAGATGGGGTATTCCATCTATCATGGTTCATTGCATATGCTTTGCAGTTCGCAGTTTCTTCTCTTATTATTACAGTTTGCACGATGGATAACCTTTTCAAGTATAGTGACAAGTCAGTGGTGTTCATTTACTTCTTCTTTTTCGGAATAAGCGCGATTATGCTGTCATTTTTAATCTCTACATTCTTCGAACGAGCGAAGACAGCGGTTGCGGTTGGGACCCTTGCTTTCTTGGGTGCTTTTTTCCCGTACTACTCTGTCAATGACGAGGCTGTTCCTATGATTCTAAAGGTCATTGCCTCTCTGCTTTCACCTACGGCTTTTGCTCTGGGGTCAATCAACTTTGCTGATTATGAGCGTGCTCATGTTGGCCTTCGTTGGAGCAATATATGGCGGGCATCATCCGGAGTGAATTTTTCAGTCTGTCTCCTGATGATGTTGCTCGATGCGTTGCTGTACTGTGTAATTGGTCTTTACCTAGATAAGGTACTTCCGAGAGAGAATGGAGTTAGGTATCCCTGGAACTTCATTTTTCAGAAGTGCTTTTGGAAGAATCCAAATACTAACAAACACCACAACTCCAGTCCAGAACATATTCGTGACAAGGTATCCCAGAAGGCAATGTTCTCTCGGAAAGAAAATGCTAAAGCTGCTGTGGAAGCAATAACCTTCGATATGAGACAACAACAGCTTGACCATAGATGCATCCAAATAAGGAATCTGCATAAGGTTTATGCTAGTAAAAAGGGGAAATGTTGTGCTGTCAACTCATTACAGCTCACCATGTATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAAAGCACAACGATATCAATGCTTGTTGGCCTTCTTCGTCCTACTTCAGGGGATGCTATGGTGTTTGGAAAAAATATTATGACAGACATGGAGGAGATACGGAAAGAGTTGGGTGTATGCCCTCAGCATGATATCCTTTTTCCAGAATTGACGGTGAAGGAGCACTTGGAAATATTTGCTATATTGAAAGGTGTGCAGGAAGATTTTCTGAACAGCGTTGTTATTGATATGGTTGACCAAGTAGGGTTGGCCGATAAAATCAACACTGCTGTTATGGCTCTTTCTGGAGGAATGAAGAGGAAGTTGTCTCTTGGAATTGCACTAATTGGAAATAGTAAGGTTATAATTCTTGATGAACCTACTAGTGGAATGGATCCATACTCTATGCGCTTGACTTGGCAATTAATAAAAAAGATTAGAAAGGGCAGGATAGTATTACTGACAACACACTCAATGGATGAAGCTGAGGCACTTGGAGATCGCATAGCCATCATGGCCAATGGTTCTTTGAAATGCTGCGGAAGTTCCCTTTTCTTGAAGCATCAGTATGGGGTTGGTTATACTCTAACTCTAGTGAAGTCTGCACCCACTGCCTCTATGGCTGCTGATATTGTTTACCGCCATATCCCATCAGCAACATGTGTGAGTGAGGTTGGAACTGAGATTTCCTTTAAGCTTCCATTGGCATCCTCAACATCCTTCGAAAGTATGTTTAGAGAAATTGAGAGTTGCATGGGATCATCCACATCAAACTTAGAAACAAGTTGTGATGAGAAGGACTATATTGGCATTGAAAGTTATGGCATATCTGTCACGACTTTGGAGGAGGTGTTCCTGAGGGTTGCAGGATGCGATTATGATGAAGCTGCTTGTTTTGACCAGAAGAATGGTCCACTGTGCCCTGAGTCTCTGATTTCTCAAACTTCTCATGATCCTACCCACAAACAGATTCTTCACTCAAAGAAATCTTTTGCTTATTATAAAGGGATTCTTGGGGTCTTATTTACAATGGTGGGAAGAGCCTGTGGTTTAATTTTTGCTACAGTGTTAAGTTTCTTAAACTTCTTAGGTGTGCAATGCTGTGGCTGTTGTATCATTTCAAGGTCAACATTTTGGAGGCATTCTAAAGCATTATTCATAAAGAGGGCAATATCTGCCCGCAGAGACCGTAAAACAATTGTTTTCCAGCTTGTAATTCCTGCAGTTTTCTTATTTTTTGGTCTTTTATTTCTCAAGCTCAAGCCACATCCTGATCAGGAGTCTGTTACCTTCACAACTTCACATTTTAATCCACTATTACGTGGTGGTGGTGGTGGTGGTCCAATTCCTTTTGATCTATCCCGGCCTATTGCACAGGAGGTTGCAGAATACATAGAAGGGGGTTGGATACAAACCTTCAAACCTAGTGGGTATAAATTCCCCAACTCAGAGAAGGCATTGAATGATGCAATTGAGGTAGCAGGGGAAACTCTGGGACCTGCTTTACTTTCAATGAGTGAATTTTTGATGTCCAGCTTTAATGAATCTTACCAGTCAAGGTATGGCGCTGTTGTGATGGATGATCAGAGTGATGATGGGAGTTTAGGGTACACTGTGCTACACAACAGTTCCTGTCAGCATGCTGCCCCAACCTTTATCAATTTAGTAAATGCTGCAATTCTTCGGCTTGCTTCTCGTAATAAGAATGTGACAATTCAAACACGCAATCACCCTTTGCCAATGACAAACAGTCAACATCTGCAACGGCATGATTTGGATGCTTTCTCTGCTGCAGTTATTGTTAGTATCGCCTTCTCCTTCATTCCTGCGTCATTTGCTGTTCCTATAGTGAAGGAACGTGAAGTAAAAGCTAAACACCAACAACTTATTAGTGGAGTTTCCATACTGTCATATTGGACTTCTACATACATATGGGACTTCATCAGCTTCCTCTTTCCTTCATCTTTTGCCATAGTTCTTTTTTACATATTTGGTCTGGACCAGTTTATTGGAAGGGGATGTTTACTGTCGACTGTCGTCATGTTTTTAGCATACGGATTAGCAATTGCATCATCAACATACTGCCTTACGTTTTTCTTTTCTGATCACACTATGGCTCAGAATGTGGTTCTCTTGGTCCACTTTTTCACGGGACTCATTCTTATGGTTATCTCATTCATTATGGGGCTTATAAAGACGACGACAAGTGCAAATTCTTTTCTTAAGAACTTTTTCAGATTATCTCCAGGATTTTGCTTTGCTGACGGACTCGCTTCACTGGCTCTTCTACGTCAAGATATGAAAAATAAAAGCAATAAGGCCTTTGATTGGAATGTTACTGGTGCCTCAATCTGCTACCTTTGTATTGAGAGCATTTGTTACTACCTTTTGGCACTTGGTCTTGAGATCTTGCCTTTCAATAAATTGACACTAGCCACACTCAAGGAGTGGTGGAAGAGTATTAAAAGTATCCCACCTAGTACTTCAAGTTATCGAGAGCCCCTTCTGACTTCTTCTGCAGAAGCTGTCACTCTGGACCTTGATGAGGACACAGATGTGAAGGCAGAAAGAACTAGGGTGCTTTCAGGTTCCATTGACAATGCCATCATCTACTTGCGTAATCTTCGTAAGGTGTATCCAGGAGGACAGCAGCATGCTACAAAGGTTGCGGTACATTCATTGACTTTTTCAGTTCAAGAAGGGGAATGTTTCGGTTTTTTAGGAACAAATGGAGCTGGGAAGACCACAACTCTGTCTATGTTGACTGGTGAGGAATCTCCTACGGATGGGACTGCTTGTATATTTGGCAAGGATATTTCCTCCAATCCCAAGGCTGCTCGTCAACATATTGGGTTTTGCCCACAGTTTGATGCTCTGTTAGAATATTTAACTGTTCAAGAGCATCTTGAGCTTTATGCCACGATAAAAGGAGTACCAGATAATAAGATAGCTGAGGTTGTAATGGAAAAGTTGGTGGAGTTTGACTTGTTAAAGCATGCCGGCAAACCATCATTTTCCCTCAGTGGGGGAAACAAGCGAAAATTATCTGTCGCAATTGCTATGATTGGAGATCCTCCTATAGTTATTCTTGATGAACCATCAACAGGTATGGATCCAATTGCCAAAAGATTCATGTGGGAAGTGATATCTCGTTTATCGACCAGACGAGGAAAGACAGCAGTGATACTGACTACCCATAGTATGAATGAAGCTCAAGCTCTGTGCACCCGTATCGGAATCATGGTTGGAGGCCAATTACGGTGCATTGGAAGTCCCCAGCATTTAAAAACTCGATTTGGAAATCATCTTGAGCTAGAGGTTAAACCTATTGAAGTCAGCTCTGTGGACTTGGACAAGCTTTGCCGAGTTATCCAAGAAAGGCTCTCGTATGTTCCTTCTCATCCAATGAGCTTACTTGATGGCCTTGAAGTCTGCATTGGTGCCACTGACTCCATTGTGGCAGAAAATGCATCGGTGGCAGAGATTAGTTTATCACGAGAAATGATAATTATGATTGGACGATGGCTTGGGAATGAAGAAAGAATAAAGCCGCTTATATCTTCAACACCACTTTCAGATGGGGTGCTTGGTGAACAGTTATTTGAGCAGTTAGATCGAGATGGTATGAGAAATTTTACTTTGAAATCTGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

1807

Amino Acids

200.95

Weight (kDa)

8.04

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	211 - 476	4.4e-20	ABC-2 family transporter protein
ABC_tran	PF00005	574 - 717	1.2e-30	ABC transporter
ABC2_membrane_3	PF12698	986 - 1387	5.5e-39	ABC-2 family transporter protein
ABC_tran	PF00005	1480 - 1622	6.1e-28	ABC transporter
AAA_21	PF13304	1591 - 1657	7.4e-09	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	662, 2129, 2766, 3956
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	3 cut(s)	86, 413, 3271
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	3 cut(s)	401, 4106, 5204
AccI	GTMKAC	1 cut(s)	3794
AccII	CGCG	3 cut(s)	757, 886, 1109
AccIII	TCCGGA	2 cut(s)	174, 1358
AciI	CCGC	9 cut(s)	671, 1160, 1166, 1348, 2304, 2404, 2944, 4433, 5315
AclWI	GGATC	7 cut(s)	2153, 2166, 2530, 2711, 4829, 4871, 4884
AcoI	YGGCCR	2 cut(s)	2034, 2280
AcsI	RAATTY	7 cut(s)	57, 320, 1366, 3200, 3284, 3976, 5395
AcuI	CTGAAG	2 cut(s)	44, 1815
AcvI	CACGTG	1 cut(s)	137
AflII	CTTAAG	1 cut(s)	3986
AflIII	ACRYGT	3 cut(s)	134, 136, 2423
AhdI	GACNNNNNGTC	1 cut(s)	3513
AhlI	ACTAGT	1 cut(s)	2147
AjnI	CCWGG	4 cut(s)	689, 1472, 4009, 4402
AjuI	GAANNNNNNNTTGG	6 cut(s)	170, 202, 1934, 1966, 5184, 5216
AleI	CACNNNNGTG	1 cut(s)	4319
AloI	GAACNNNNNNTCC	2 cut(s)	2600, 2632
Alw21I	GWGCWC	3 cut(s)	1318, 1950, 4991
Alw26I	GTCTC	7 cut(s)	10, 281, 1385, 1627, 2097, 2697, 2943
Alw44I	GTGCAC	1 cut(s)	4987
AlwI	GGATC	7 cut(s)	2153, 2166, 2530, 2711, 4829, 4871, 4884
AlwNI	CAGNNNCTG	3 cut(s)	370, 3396, 4289
Ama87I	CYCGRG	1 cut(s)	520
Aor13HI	TCCGGA	2 cut(s)	174, 1358
ApaLI	GTGCAC	1 cut(s)	4987
ApoI	RAATTY	7 cut(s)	57, 320, 1366, 3200, 3284, 3976, 5395
AseI	ATTAAT	1 cut(s)	2189
Asp700I	GAANNNNTTC	3 cut(s)	1548, 1989, 3995
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	5 cut(s)	83, 888, 1109, 2175, 3332
AsuC2I	CCSGG	1 cut(s)	3127
AsuHPI	GGTGA	9 cut(s)	56, 67, 146, 1257, 1726, 1951, 3485, 4544, 5366
AsuII	TTCGAA	2 cut(s)	1143, 2487
AvaI	CYCGRG	1 cut(s)	520
AxyI	CCTNAGG	1 cut(s)	2621
BaeGI	GKGCMC	2 cut(s)	2687, 4991
BalI	TGGCCA	1 cut(s)	2282
BamHI	GGATCC	2 cut(s)	2158, 4876
BanI	GGYRCC	3 cut(s)	401, 4106, 5204
BanII	GRGCYC	1 cut(s)	4266
BauI	CACGAG	2 cut(s)	798, 5259
BbrPI	CACGTG	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	1160, 4511
Bbv12I	GWGCWC	3 cut(s)	1318, 1950, 4991
BbvCI	CCTCAGC	3 cut(s)	1908, 2250, 4716
BceAI	ACGGC	2 cut(s)	1287, 3545
BcgI	CGANNNNNNTGC	6 cut(s)	1786, 1820, 4978, 5012, 5360, 5394
BciT130I	CCWGG	4 cut(s)	691, 1474, 4011, 4404
BciVI	GTATCC	5 cut(s)	1479, 1573, 3165, 4244, 4410
BclI	TGATCA	5 cut(s)	300, 891, 3037, 3346, 3868
BcnI	CCSGG	1 cut(s)	3127
BcoDI	GTCTC	7 cut(s)	10, 281, 1385, 1627, 2097, 2697, 2943
BcuI	ACTAGT	1 cut(s)	2147
BfmI	CTRYAG	8 cut(s)	102, 619, 2826, 2985, 3555, 3609, 4281, 4842
BfoI	RGCGCY	1 cut(s)	3333
BfrI	CTTAAG	1 cut(s)	3986
BfuAI	ACCTGC	3 cut(s)	86, 413, 3271
BfuI	GTATCC	5 cut(s)	1479, 1573, 3165, 4244, 4410
BglI	GCCNNNNNGGC	2 cut(s)	2279, 2384
BglII	AGATCT	2 cut(s)	391, 4170
BmcAI	AGTACT	1 cut(s)	4246
Bme1390I	CCNGG	5 cut(s)	691, 1474, 3127, 4011, 4404
BmeRI	GACNNNNNGTC	1 cut(s)	3513
BmeT110I	CYCGRG	1 cut(s)	520
BmrFI	CCNGG	5 cut(s)	691, 1474, 3127, 4011, 4404
BmrI	ACTGGG	1 cut(s)	593
BmuI	ACTGGG	1 cut(s)	593
BoxI	GACNNNNGTC	1 cut(s)	3800
BpiI	GAAGAC	2 cut(s)	1160, 4511
BpmI	CTGGAG	4 cut(s)	623, 1519, 2091, 3993
Bpu10I	CCTNAGC	3 cut(s)	1908, 2250, 4716
Bpu14I	TTCGAA	2 cut(s)	1143, 2487
BpuEI	CTTGAG	8 cut(s)	706, 3002, 3008, 4187, 4190, 4691, 4962, 5093
BpuMI	CCSGG	1 cut(s)	3127
Bsa29I	ATCGAT	1 cut(s)	542
BsaAI	YACGTR	2 cut(s)	137, 3086
BsaI	GGTCTC	1 cut(s)	2943
BsaJI	CCNNGG	3 cut(s)	749, 1472, 4593
BsaWI	WCCGGW	3 cut(s)	8, 174, 1358
BsaXI	ACNNNNNCTCC	6 cut(s)	438, 468, 1517, 1547, 2600, 2630
Bse118I	RCCGGY	1 cut(s)	4763
Bse1I	ACTGG	8 cut(s)	588, 823, 1536, 3316, 3766, 4047, 4108, 4534
Bse21I	CCTNAGG	1 cut(s)	2621
Bse3DI	GCAATG	4 cut(s)	984, 1248, 1581, 2867
BseAI	TCCGGA	2 cut(s)	174, 1358
BseBI	CCWGG	4 cut(s)	691, 1474, 4011, 4404
BseCI	ATCGAT	1 cut(s)	542
BseDI	CCNNGG	3 cut(s)	749, 1472, 4593
BseMI	GCAATG	4 cut(s)	984, 1248, 1581, 2867
BseNI	ACTGG	8 cut(s)	588, 823, 1536, 3316, 3766, 4047, 4108, 4534
BseRI	GAGGAG	2 cut(s)	1892, 2624
BseSI	GKGCMC	2 cut(s)	2687, 4991
BseYI	CCCAGC	3 cut(s)	675, 4499, 5040
BsgI	GTGCAG	2 cut(s)	2000, 2352
Bsh1236I	CGCG	3 cut(s)	757, 886, 1109
BshNI	GGYRCC	3 cut(s)	401, 4106, 5204
BshVI	ATCGAT	1 cut(s)	542
BsiHKAI	GWGCWC	3 cut(s)	1318, 1950, 4991
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	5 cut(s)	9, 175, 1359, 3127, 4764
BslFI	GGGAC	8 cut(s)	19, 770, 1186, 3273, 3713, 3930, 4567, 5022
BsmAI	GTCTC	7 cut(s)	10, 281, 1385, 1627, 2097, 2697, 2943
BsmFI	GGGAC	8 cut(s)	19, 770, 1186, 3273, 3713, 3930, 4567, 5022
BsmI	GAATGC	1 cut(s)	2905
Bso31I	GGTCTC	1 cut(s)	2943
BsoBI	CYCGRG	1 cut(s)	520
Bsp119I	TTCGAA	2 cut(s)	1143, 2487
Bsp1286I	GDGCHC	5 cut(s)	1318, 1950, 2687, 4266, 4991
Bsp13I	TCCGGA	2 cut(s)	174, 1358
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	9 cut(s)	671, 1160, 1166, 1348, 2304, 2404, 2944, 4433, 5315
BspDI	ATCGAT	1 cut(s)	542
BspEI	TCCGGA	2 cut(s)	174, 1358
BspFNI	CGCG	3 cut(s)	757, 886, 1109
BspHI	TCATGA	1 cut(s)	2713
BspMAI	CTGCAG	4 cut(s)	623, 2989, 3559, 4285
BspMI	ACCTGC	3 cut(s)	86, 413, 3271
BspPI	GGATC	7 cut(s)	2153, 2166, 2530, 2711, 4829, 4871, 4884
BspQI	GCTCTTC	3 cut(s)	1767, 2797, 4053
BspT104I	TTCGAA	2 cut(s)	1143, 2487
BspT107I	GGYRCC	3 cut(s)	401, 4106, 5204
BspTI	CTTAAG	1 cut(s)	3986
BspTNI	GGTCTC	1 cut(s)	2943
BsrDI	GCAATG	4 cut(s)	984, 1248, 1581, 2867
BsrFI	RCCGGY	1 cut(s)	4763
BsrI	ACTGG	8 cut(s)	588, 823, 1536, 3316, 3766, 4047, 4108, 4534
BssAI	RCCGGY	1 cut(s)	4763
BssECI	CCNNGG	3 cut(s)	749, 1472, 4593
BssSI	CACGAG	2 cut(s)	798, 5259
BssT1I	CCWWGG	2 cut(s)	749, 4593
Bst2BI	CACGAG	2 cut(s)	798, 5259
Bst2UI	CCWGG	4 cut(s)	691, 1474, 4011, 4404
Bst6I	CTCTTC	7 cut(s)	249, 279, 1767, 2075, 2797, 4053, 4214
BstAFI	CTTAAG	1 cut(s)	3986
BstAPI	GCANNNNNTGC	3 cut(s)	2375, 2939, 5231
BstBAI	YACGTR	2 cut(s)	137, 3086
BstBI	TTCGAA	2 cut(s)	1143, 2487
BstC8I	GCNNGC	9 cut(s)	645, 1314, 1350, 2944, 3405, 3453, 4419, 4761, 4765
BstDSI	CCRYGG	1 cut(s)	749
BstENI	CCTNNNNNAGG	3 cut(s)	1436, 1830, 4307
BstFNI	CGCG	3 cut(s)	757, 886, 1109
BstH2I	RGCGCY	1 cut(s)	3333
BstHHI	GCGC	5 cut(s)	83, 888, 1109, 2175, 3332
BstMAI	GTCTC	7 cut(s)	10, 281, 1385, 1627, 2097, 2697, 2943
BstNI	CCWGG	4 cut(s)	691, 1474, 4011, 4404
BstNSI	RCATGY	4 cut(s)	2427, 3407, 4421, 4763
BstPAI	GACNNNNGTC	1 cut(s)	3800
BstSCI	CCNGG	5 cut(s)	689, 1472, 3125, 4009, 4402
BstSFI	CTRYAG	8 cut(s)	102, 619, 2826, 2985, 3555, 3609, 4281, 4842
BstSLI	GKGCMC	2 cut(s)	2687, 4991
BstUI	CGCG	3 cut(s)	757, 886, 1109
BstV2I	GAAGAC	2 cut(s)	1160, 4511
BstX2I	RGATCY	5 cut(s)	391, 2158, 4170, 4834, 4876
BstXI	CCANNNNNNTGG	2 cut(s)	2672, 3773
BstYI	RGATCY	5 cut(s)	391, 2158, 4170, 4834, 4876
Bsu15I	ATCGAT	1 cut(s)	542
Bsu36I	CCTNAGG	1 cut(s)	2621
BsuI	GTATCC	5 cut(s)	1479, 1573, 3165, 4244, 4410
BsuTUI	ATCGAT	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	749
BtsI	GCAGTG	4 cut(s)	628, 2049, 2373, 4950
BveI	ACCTGC	3 cut(s)	86, 413, 3271
Cac8I	GCNNGC	9 cut(s)	645, 1314, 1350, 2944, 3405, 3453, 4419, 4761, 4765
CaiI	CAGNNNCTG	3 cut(s)	370, 3396, 4289
CciI	TCATGA	1 cut(s)	2713
CfoI	GCGC	5 cut(s)	83, 888, 1109, 2175, 3332
Cfr10I	RCCGGY	1 cut(s)	4763
ClaI	ATCGAT	1 cut(s)	542
CseI	GACGC	2 cut(s)	763, 3582
CspCI	CAANNNNNGTGG	2 cut(s)	3172, 3207
DraI	TTTAAA	1 cut(s)	5049
DriI	GACNNNNNGTC	1 cut(s)	3513
EaeI	YGGCCR	2 cut(s)	2034, 2280
Eam1104I	CTCTTC	7 cut(s)	249, 279, 1767, 2075, 2797, 4053, 4214
Eam1105I	GACNNNNNGTC	1 cut(s)	3513
EarI	CTCTTC	7 cut(s)	249, 279, 1767, 2075, 2797, 4053, 4214
Eco130I	CCWWGG	2 cut(s)	749, 4593
Eco147I	AGGCCT	1 cut(s)	4085
Eco24I	GRGCYC	1 cut(s)	4266
Eco31I	GGTCTC	1 cut(s)	2943
Eco32I	GATATC	3 cut(s)	1800, 1918, 4911
Eco57I	CTGAAG	2 cut(s)	44, 1815
Eco72I	CACGTG	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	2621
Eco88I	CYCGRG	1 cut(s)	520
EcoNI	CCTNNNNNAGG	3 cut(s)	1436, 1830, 4307
EcoO109I	RGGNCCY	3 cut(s)	470, 1173, 3260
EcoRII	CCWGG	4 cut(s)	689, 1472, 4009, 4402
EcoRV	GATATC	3 cut(s)	1800, 1918, 4911
EcoT14I	CCWWGG	2 cut(s)	749, 4593
EcoT22I	ATGCAT	2 cut(s)	1661, 5236
EcoT38I	GRGCYC	1 cut(s)	4266
ErhI	CCWWGG	2 cut(s)	749, 4593
FalI	AAGNNNNNCTT	8 cut(s)	715, 747, 1934, 1966, 2760, 2792, 4653, 4685
FaqI	GGGAC	8 cut(s)	19, 770, 1186, 3273, 3713, 3930, 4567, 5022
FauI	CCCGC	2 cut(s)	1341, 2951
FauNDI	CATATG	2 cut(s)	991, 3695
FbaI	TGATCA	5 cut(s)	300, 891, 3037, 3346, 3868
FblI	GTMKAC	1 cut(s)	3794
FriOI	GRGCYC	1 cut(s)	4266
GlaI	GCGC	5 cut(s)	82, 887, 1108, 2174, 3331
GsaI	CCCAGC	3 cut(s)	679, 4503, 5044
GsuI	CTGGAG	4 cut(s)	623, 1519, 2091, 3993
HaeII	RGCGCY	1 cut(s)	3333
HapII	CCGG	5 cut(s)	9, 175, 1359, 3127, 4764
HgaI	GACGC	2 cut(s)	763, 3582
HhaI	GCGC	5 cut(s)	83, 888, 1109, 2175, 3332
Hin6I	GCGC	5 cut(s)	81, 886, 1107, 2173, 3330
HinP1I	GCGC	5 cut(s)	81, 886, 1107, 2173, 3330
HincII	GTYRAC	7 cut(s)	1720, 2020, 2892, 3518, 3795, 4527, 4607
HindII	GTYRAC	7 cut(s)	1720, 2020, 2892, 3518, 3795, 4527, 4607
HindIII	AAGCTT	2 cut(s)	2459, 5120
HpaII	CCGG	5 cut(s)	9, 175, 1359, 3127, 4764
HphI	GGTGA	9 cut(s)	56, 67, 146, 1257, 1726, 1951, 3485, 4544, 5366
Hpy99I	CGWCG	1 cut(s)	3967
HpyCH4IV	ACGT	6 cut(s)	136, 306, 3085, 3622, 3854, 4054
HpySE526I	ACGT	6 cut(s)	136, 306, 3085, 3622, 3854, 4054
HspAI	GCGC	5 cut(s)	81, 886, 1107, 2173, 3330
KflI	GGGWCCC	1 cut(s)	1173
Kpn2I	TCCGGA	2 cut(s)	174, 1358
KpnI	GGTACC	1 cut(s)	405
KroI	GCCGGC	1 cut(s)	4763
KroNI	GCCGGC	1 cut(s)	4765
Ksp22I	TGATCA	5 cut(s)	300, 891, 3037, 3346, 3868
LguI	GCTCTTC	3 cut(s)	1767, 2797, 4053
LmnI	GCTCC	6 cut(s)	367, 446, 1335, 1778, 1945, 4496
MaeII	ACGT	6 cut(s)	136, 306, 3085, 3622, 3854, 4054
MfeI	CAATTG	5 cut(s)	2961, 3234, 3828, 4818, 4881
MflI	RGATCY	5 cut(s)	391, 2158, 4170, 4834, 4876
MhlI	GDGCHC	5 cut(s)	1318, 1950, 2687, 4266, 4991
MlsI	TGGCCA	1 cut(s)	2282
MluNI	TGGCCA	1 cut(s)	2282
MlyI	GAGTC	6 cut(s)	647, 2699, 3053, 3912, 4026, 5207
MmeI	TCCRAC	6 cut(s)	213, 818, 1313, 2419, 3149, 4990
Mox20I	TGGCCA	1 cut(s)	2282
Mph1103I	ATGCAT	2 cut(s)	1661, 5236
MroI	TCCGGA	2 cut(s)	174, 1358
MroNI	GCCGGC	1 cut(s)	4763
MroXI	GAANNNNTTC	3 cut(s)	1548, 1989, 3995
MscI	TGGCCA	1 cut(s)	2282
MslI	CAYNNNNRTG	5 cut(s)	1551, 2331, 3694, 3926, 4319
Msp20I	TGGCCA	1 cut(s)	2282
MspA1I	CMGCKG	3 cut(s)	22, 618, 1160
MspCI	CTTAAG	1 cut(s)	3986
MspI	CCGG	5 cut(s)	9, 175, 1359, 3127, 4764
MspR9I	CCNGG	5 cut(s)	691, 1474, 3127, 4011, 4404
MunI	CAATTG	5 cut(s)	2961, 3234, 3828, 4818, 4881
Mva1269I	GAATGC	1 cut(s)	2905
MvaI	CCWGG	4 cut(s)	691, 1474, 4011, 4404
MvnI	CGCG	3 cut(s)	757, 886, 1109
NaeI	GCCGGC	1 cut(s)	4765
NciI	CCSGG	1 cut(s)	3127
NcoI	CCATGG	1 cut(s)	749
NdeI	CATATG	2 cut(s)	991, 3695
NgoMIV	GCCGGC	1 cut(s)	4763
NmeAIII	GCCGAG	1 cut(s)	5153
NmuCI	GTSAC	7 cut(s)	62, 73, 1061, 1553, 2596, 3472, 4291
NsiI	ATGCAT	2 cut(s)	1661, 5236
NspI	RCATGY	4 cut(s)	2427, 3407, 4421, 4763
NspV	TTCGAA	2 cut(s)	1143, 2487
OliI	CACNNNNGTG	1 cut(s)	4319
PaeI	GCATGC	3 cut(s)	3407, 4421, 4763
PagI	TCATGA	1 cut(s)	2713
PaqCI	CACCTGC	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	4085
PciI	ACATGT	1 cut(s)	2423
PciSI	GCTCTTC	3 cut(s)	1767, 2797, 4053
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PctI	GAATGC	1 cut(s)	2905
PdiI	GCCGGC	1 cut(s)	4765
PdmI	GAANNNNTTC	3 cut(s)	1548, 1989, 3995
PflFI	GACNNNGTC	1 cut(s)	292
PfoI	TCCNGGA	2 cut(s)	4009, 4402
PleI	GAGTC	6 cut(s)	647, 2698, 3052, 3912, 4026, 5207
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
PpsI	GAGTC	6 cut(s)	647, 2698, 3052, 3912, 4026, 5207
Ppu21I	YACGTR	2 cut(s)	137, 3086
PpuMI	RGGWCCY	3 cut(s)	470, 1173, 3260
PscI	ACATGT	1 cut(s)	2423
PshAI	GACNNNNGTC	1 cut(s)	3800
PshBI	ATTAAT	1 cut(s)	2189
PsiI	TTATAA	4 cut(s)	662, 2129, 2766, 3956
Psp5II	RGGWCCY	3 cut(s)	470, 1173, 3260
Psp6I	CCWGG	4 cut(s)	689, 1472, 4009, 4402
PspCI	CACGTG	1 cut(s)	137
PspFI	CCCAGC	3 cut(s)	675, 4499, 5040
PspGI	CCWGG	4 cut(s)	689, 1472, 4009, 4402
PspPPI	RGGWCCY	3 cut(s)	470, 1173, 3260
PstI	CTGCAG	4 cut(s)	623, 2989, 3559, 4285
PstNI	CAGNNNCTG	3 cut(s)	370, 3396, 4289
PsuI	RGATCY	5 cut(s)	391, 2158, 4170, 4834, 4876
PsyI	GACNNNGTC	1 cut(s)	292
PvuII	CAGCTG	2 cut(s)	22, 618
RseI	CAYNNNNRTG	5 cut(s)	1551, 2331, 3694, 3926, 4319
SalI	GTCGAC	1 cut(s)	3793
SapI	GCTCTTC	3 cut(s)	1767, 2797, 4053
ScaI	AGTACT	1 cut(s)	4246
SchI	GAGTC	6 cut(s)	647, 2699, 3053, 3912, 4026, 5207
ScrFI	CCNGG	5 cut(s)	691, 1474, 3127, 4011, 4404
SduI	GDGCHC	5 cut(s)	1318, 1950, 2687, 4266, 4991
SfcI	CTRYAG	8 cut(s)	102, 619, 2826, 2985, 3555, 3609, 4281, 4842
SfuI	TTCGAA	2 cut(s)	1143, 2487
SmiMI	CAYNNNNRTG	5 cut(s)	1551, 2331, 3694, 3926, 4319
SmlI	CTYRAG	9 cut(s)	721, 3017, 3023, 3986, 4166, 4205, 4670, 4977, 5072
SmoI	CTYRAG	9 cut(s)	721, 3017, 3023, 3986, 4166, 4205, 4670, 4977, 5072
SpeI	ACTAGT	1 cut(s)	2147
SphI	GCATGC	3 cut(s)	3407, 4421, 4763
SseBI	AGGCCT	1 cut(s)	4085
SsiI	CCGC	9 cut(s)	671, 1160, 1166, 1348, 2304, 2404, 2944, 4433, 5315
SspI	AATATT	3 cut(s)	1861, 1959, 4649
StuI	AGGCCT	1 cut(s)	4085
StyD4I	CCNGG	5 cut(s)	689, 1472, 3125, 4009, 4402
StyI	CCWWGG	2 cut(s)	749, 4593
TaiI	ACGT	6 cut(s)	139, 309, 3088, 3625, 3857, 4057
TatI	WGTACW	3 cut(s)	850, 1410, 4244
TauI	GCSGC	2 cut(s)	674, 5317
TseFI	GTSAC	7 cut(s)	62, 73, 1061, 1553, 2596, 3472, 4291
Tsp45I	GTSAC	7 cut(s)	62, 73, 1061, 1553, 2596, 3472, 4291
TspGWI	ACGGA	5 cut(s)	767, 1900, 3834, 4044, 4562
Tth111I	GACNNNGTC	1 cut(s)	292
Vha464I	CTTAAG	1 cut(s)	3986
VneI	GTGCAC	1 cut(s)	4987
VspI	ATTAAT	1 cut(s)	2189
XagI	CCTNNNNNAGG	3 cut(s)	1436, 1830, 4307
XapI	RAATTY	7 cut(s)	57, 320, 1366, 3200, 3284, 3976, 5395
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	4 cut(s)	2427, 3407, 4421, 4763
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2380, 3323
XmiI	GTMKAC	1 cut(s)	3794
XmnI	GAANNNNTTC	3 cut(s)	1548, 1989, 3995
ZrmI	AGTACT	1 cut(s)	4246
Zsp2I	ATGCAT	2 cut(s)	1661, 5236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.