Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8213162.1

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 631

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8213162.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggatagccttttcaagtatagtgacaagtcagtggtgttcatttacttcttctttttcggaataagcgcgattatgctgtcatttttaatctctacattcttcgaacgagcgaagacagcggttgcggttgggacccttgctttcttgggtgcttttttcccatactactctgtcaatgacgaggctgttcctatgattctaaaggtcattgcctctctgctttcacctacggcttttgctctggggtcaatcaactttgctgattatgagcgtgctcatgttggccttcgttggagcaatatctggcgggcatcatccggagtgaatttttcagtctgtcttttgatgatgttgctcgatgcgttgctgtactgtgtaattggtctttacctagataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

134

Amino Acids

14.99

Weight (kDa)

6.53

Isoelectric Point (pI)

20.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	3 cut(s)	122, 128, 310
AcsI	RAATTY	1 cut(s)	328
AfaI	GTAC	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	16
Alw21I	GWGCWC	1 cut(s)	280
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	219
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	136, 137
BmsI	GCATC	2 cut(s)	323, 352
BpiI	GAAGAC	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	320
BseGI	GGATG	1 cut(s)	317
BseMI	GCAATG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	288
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp13I	TCCGGA	1 cut(s)	320
BspACI	CCGC	3 cut(s)	122, 128, 310
BspANI	GGCC	1 cut(s)	288
BspEI	TCCGGA	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	136, 137
BspT104I	TTCGAA	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	276, 312
BstF5I	GGATG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	276, 312
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	4 cut(s)	9, 188, 236, 288
CviKI_1	RGCY	4 cut(s)	9, 188, 236, 288
CviQI	GTAC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	135
FaeI	CATG	1 cut(s)	284
FaiI	YATR	6 cut(s)	21, 77, 166, 197, 270, 282
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	280
FauI	CCCGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	304
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	321
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	69
KflI	GGGWCCC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	3 cut(s)	230, 292, 334
LweI	GCATC	2 cut(s)	323, 352
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	23
MboII	GAAGA	3 cut(s)	43, 94, 127
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	2 cut(s)	328, 381
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	2 cut(s)	178, 226
MroI	TCCGGA	1 cut(s)	320
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	136, 137
NmuCI	GTSAC	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	136, 137
PspPI	GGNCC	1 cut(s)	135
PspPPI	RGGWCCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	3 cut(s)	210, 232, 396
SfaNI	GCATC	2 cut(s)	323, 352
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	1 cut(s)	135
Sse9I	AATT	2 cut(s)	328, 381
SsiI	CCGC	3 cut(s)	122, 128, 310
SspMI	CTAG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	105, 360
TasI	AATT	2 cut(s)	328, 381
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	328
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.