Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Reverse (-)

26878786 .. 26901839

Gene Structure 23054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG249700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5481 bp

ATGTTGGTGGAAGTGGGCAAAGGAATATCCCCTAATTTTGAGCAAGTGTTGGAATTACTATTGAAGAAGGAAGAGATTTTGGCTTTTGCACCGGACACAGAAGAGACAAGGTCAATGATCAACGTGATGTCGATGAAATTTCCTCTCTTGAAGCATGTTTCTAGAGTTTACAAAGATGAGCAGGAGCTGGAAACCTATATACGCTCAAATCTCTATGGTACCTGCAATCAAATCATGAATTGCTCGAACCCAAAAATCAAAGGAGCAGTAGTATTTCATGAGCAAGGTCCTCAACTTTTCGATTATAGCATACGACTTAATCACACATGGGCTTTCTCGGGATTTCCTGATGTTAAATCGATCATGGACACAAATGGCCCTTACTTAAATGACTTGGAACTGGGCGTGAATACTGTACCGACAATGCAATACAGCTGCAGTGGATTTTTAACTCTCCAGCAAGCACTAGACTCTTTTATAATTTTTGCGGCCCAGCAATCGGATACCAGAAATATAGAACTTCCTACTTCGCTGTCCTCTAGCACACCTTCCTCTCTCAAAGTTCCATGGACGCGATATGGTCCGTCAAACATCCGTATAGTCCCGTTTCCAACTCGTGAATACACTGATGATGAGTTCCAGTCCATCATAAAAAGTGTCATGGGTGTACTGTATCTTTTGGGATTTCTCTATCCTATTTCGCGCTTGATCAGCTATTCTGTGTTTGAGAAGGAACAAAAGATAAGAGAAGGTCTTTATATGATGGGGCTGAAAGATGGGGTATTCCATCTATCGTGGTTCATTGCATATGCTTTGCAGTTCGCAGTTTCTTCTCTTATTATTACAGTTTGCACGATGGATAACCTTTTCAAGTATAGTGACAAGTCGGTGGTGTTCATTTACTTCTTCTTTTTCGGAATAAGCGCGATTATGCTGTCATTTTTAATCTCTACATTCTTCGAACGAGCGAAGACAGCAGTTGCGGTTGGGACCCTTGCTTTCTTGGGTGCTTTTTTCCCATACTACTCTGTCAATGACGAGGCTGTTCCTATGATTCTAAAGGTCATTGCCTCTCTGCTTTCACCTACGGCTTTTGCTCTGGGGTCAATCAACTTTGCTGATTATGAGCGTGCTCATGTTGGCCTTCGTTGGAGCAATATATGGCGGGCATCATCCGGAGTGAATTTTTCAGTCTGTCTCCTGATGATGTTGCTCGATGCGTTGCTGTACTGTGTAATTGGTCTTTACCTAGATAAGGTACTTCCGAGAGAGAATGGAGTTAGGTATCCCTGGAACTTCATTTTTCAGAAGTGCTTTTGGAAGAATCCAAATATTAACAAACACCATAACTCCAGTCCAGAAGTTCATATTCGTGACAAGGTATCCCAGAAGGCAATGTTTTCTCGGAAAGAAAATGCTAAAGCTGCTGTGGAAGCAATAACCTTCGATATGAGACAACAGGAGCTTGACCATAGATGCATCCATATAAGGAATCTGCATAAGGTTTATGCTAGTAAAAAGGGGAAATGTTGTGCTGTCAACTCATTACAGCTCACCATGTATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAAAGCACAACGATATCAATGCTTGTTGGCCTTCTTCGTCCTACTTCAGGGGATGCTATGGTGTTTGGAAAAAATATTATGACAGACATGGAGGAGATACGGAAAGAGTTGGGTGTATGCCCTCAGCATGATATCCTTTTTCCAGAATTGACGGTGAAGGAGCACTTGGAAATATTTGCTATATTGAAAGGTGTGCAGGAAGATTTTCTGAACAGCGTTGTTATTGATATGGTTGACCAAGTAGGGTTGGCCGATAAAATCAATACTGCTGTTATGGCTCTTTCTGGAGGAATGAAGAGGAAGTTGTCTCTTGGAATTGCACTAATTGGAAATAGTAAGGTTATAATTCTTGATGAACCTACTAGTGGAATGGATCCATACTCTATGCGCTTGACTTGGCAATTAATAAAAAAGATTAGAAAGGGCAGGATAGTATTACTGACAACACACTCAATGGATGAAGCTGAGGCACTTGGAGATCGCATAGCCATCATGGCCAATGGTTCTTTGAAATGCTGCGGAAGTTCCCTTTTCTTGAAGCATCAGTATGGGGTTGGTTATACTCTAACTCTAGTGAAGTCTGCACCCACTGCCTCTATGGCTGCTGATATTGTTTACCGCCATATCCCATCAGCAACATGTGTGAGTGAGGTTGGAACTGAGATTTCCTTTAAGCTTCCATTGGCATCCTCAACATCCTTCGAAAGTATGTTTAGAGAAATTGAGAGTTGCATGGGATCATCCACATCAAACTTAGAAACAAGTTGTGATGAGAAGGACTATATTGGCATTGAAAGTTATGGCATATCTGTCACAACTTTGGAGGAGGTGTTCCTGAGGGTTGCAGGATGCGATTATGACGAAGCTGCTTTTTTTGACCAGAAGAATGGTCCACTGTGCCCTGAGTCTCTGATTTCTCAAACTTCTCATGATCCTACCCACAAACAGATTCTTCACTCGAAGAAATCTTTTGCTTATTATAAAGAGATTCTTGGGGTCTTATTTACAATGGTGGGAAAAGCCTGTGGTTTAATTTTTGCTACAGTGTTAAGTTTCTTAAACTTCTTAGGTGTGCAATGCTGTGGCTGTTGTATCATTTCAAGGTCAACATTTTGGAGGCATTCTAAAGCATTATTCATAAAGAGGGCAATATCTGCCCGCAGAGACCGTAAAACAATTGTTTTCCAGCTTGTAATTCCTGCAGTTTTCTTATTTTTTGGTCTTTTATTTCTCAAGCTCAAGCCACATCCTGATCAGGAGTCTGTTACCTTCACAACTTCACATTTTAATCCACTATTACGTGGTGGTGGTGGTGGTGGTCCAATTCCTTTTGATCTATCCCGGCCTATTGCACAGGAGGTTGCAGAATACATAGAAGGGGGTTGGATACAAACCTTCAAACCTAGTGGGTATAAATTCCCCAACTCAGAGAAGGCATTGAATGATGCAATTGAGGTAGCAGGGGAAACTCTGGGACCTGCTTTACTTTCAATGAGTGAATTTTTGATGTCCAGCTTTAATGAATCTTACCAGTCAAGGTATGGCGCAGTTGTGATGGATGATCAGAGTGATGATGGGAGTTTAGGGTACACTGTGCTGCACAACAGTTCCTGTCAGCATGCTGCCCCAACCTTTATCAATTTAGTAAATGCTGCAATTCTTCGGCTTGCTTCTCGTAATAAGAATGTGACAATTCAAACACGCAATCACCCTTTGCCAATGACAAACAGTCAACATCTGCAACGGCATGATTTGGATGCTTTCTCTGCTGCAGTTATTGTTAGTATCGCCTTCTCCTTCATTCCTGCATCATTTGCTGTTCCTATAGTGAAGGAACGTGAAGTAAAAGCTAAACACCAACAACTTATTAGTGGAGTTTCCATACTGTCATATTGGACTTCTACATACATATGGGACTTCATCAGCTTCCTCTTTCCTTCATCTTTTGCCATAGTTCTTTTTTACACATTTGGTCTGGACCAGTTTATTGGAAGGGGATGTTTACTGTCGACTGTTGTCATGTTTTTAGCATACGGATTAGCAATTGCATCATCAACATACTGCCTTACGTTTTTCTTTTCTGATCACACTATGGCTCAGAATGTAGTTCTCTTGGTCCACTTTTTCACGGGACTCATTCTTATGGTTATCTCATTCATTATGGGGCTTATAAAGACGACGACAAGTGCAAATTCTTTTCTTAAGAACTTTTTCAGATTATCTCCAGGATTTTGCTTTGCTGATGGACTCGCTTCACTGGCTCTTCTACGTCAAGATATGAAAAATAAAAGCAATAAGGCCTTTGATTGGAATGTTACTGGTGGCTCAATCTGCTACCTTTGTATTGAGAGCATTTGTTACTTCCTTTTGGCACTTGGTCTTGAAATCTTGCCTTTCAATAAATTGACACTTGCCACACTCAAGGAGTGGTGGAAGAGTATTAAAAGTATCCCACCTAGCACTTCAAGTTATCGAGAGCCCCTTCTGACTTCTTCCACAGAATCTGTCACTCTGGACCTTGATGAGGACACAGATGTGAAGGCAGAAAGAACTAGGGTACTTTCAGGTTCCATTGACAATGCCATCATCTACTTGCGTAATCTTCATAAGGTGTATCCAGGAGGACAGCAGCATGCTACAAAGGTTGCGGTACATTCATTGACTTTTTCAGTTCAAGAAGGGGAATGTTTTGGTTTTTTAGGAACAAATGGAGCTGGGAAGACCACAACTCTGTCTATGTTGACTGGTGAGGAATCTCCTACGGATGGGACTGCTTGCATATTTGGCAAGGATATTTCCTCCAATCCCAAGGCTGCTCGTCAACATATTGGGTTTTGCCCACAGTTTGATGCTCTGTTAGAATATTTAACTGTTCAAGAGCATCTTGAGCTTTATGCCACGATAAAAGGAGTACCAGATAATAAGATAGCTGAGGTTGTAATGGAAAAGTTGGTGGAGTTTGACTTGTTAAAGCATGCTGGCAAACCATCATTTTCCCTCAGTGGGGGAAACAAGCGAAAATTATCGGTCGCAATTGCTATGATTGGAGATCCTCCTATAGTTATTCTTGATGAACCATCAACAGGCATGGATCCAATTGCCAAGAGATTCATGTGGGAAGTGATATCTCGTTTATCGACCAGACGAGGAAAGACAGCAGTGATACTGACTACCCATAGTATGAATGAAGCTCAAGCTCTGTGCACCCGTATCGGAATCATGGTTGGAGGCCAATTACGGTGCATTGGAAGTCCCCAGCATTTAAAAACTCGATTTGGAAATCATCTTGAGCTAGAGGTTAAACCTATTGAAGTCAGCTCTGTGGACTTGGACAAGCTTTGCCGAGTTATCCAAGAAAGGCTCTCATATGTTCCTTCTCATCCAATGAGCTTACTTGATGGCCTTGAAGTCTGCATTGGTGCCACTGACTCCATTGTGGCAGAAAATGCATCGGTGGCAGAGATTAGTTTATCACGAGAAATGATAATTATGATTGGACGATGGCTTGGGAATGAAGAAAGAATAAAGCCGCTTATATCTTCAACACCACTTTCAGATGGGGTGCTTGGTGAACAGTTATTTGAGCAGTTAGATCGAGATGGTGGAATACCATTGCCAATATTTTCTGAATGGTGGCTGTTCAATGACAAGTTTTCAGCAATCGATTCATTTGTCCTAACATCATTTCCTGGTGCAATGTTCCAGGGAATGAATGGCTTGAGTGTTAAATATCAGTTGCCTTGTGGTCCGCACCTCTCTCTTGCTGATGTATTTGGACACCTTGAACGGAAAAGAAACCGCCTTGGCATCGCAGAGTACAGTATTAGCCAGTCCACTCTGGAGACCATATTCAATCATTTTGCAGCCAACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

1826

Amino Acids

202.99

Weight (kDa)

6.65

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	150 - 415	5.3e-20	ABC-2 family transporter protein
ABC_tran	PF00005	514 - 657	1.3e-30	ABC transporter
ABC2_membrane_3	PF12698	926 - 1327	1.8e-39	ABC-2 family transporter protein
ABC_tran	PF00005	1420 - 1562	6.1e-28	ABC transporter
AAA_21	PF13304	1531 - 1597	7.5e-09	AAA domain, putative AbiEii toxin, Type IV TA system
R1_ABCA1	PF23321	1752 - 1812	1.3e-10	ABCA1-like, C-terminal R1 regulatory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	479, 1949, 2586, 3776
Acc36I	ACCTGC	2 cut(s)	230, 3091
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	2 cut(s)	218, 5024
AccI	GTMKAC	1 cut(s)	3614
AccII	CGCG	3 cut(s)	574, 703, 926
AccIII	TCCGGA	1 cut(s)	1175
AclWI	GGATC	7 cut(s)	1973, 1986, 2350, 2531, 4649, 4691, 4704
AcoI	YGGCCR	2 cut(s)	1854, 2100
AcsI	RAATTY	5 cut(s)	137, 1183, 3020, 3104, 3796
AcuI	CTGAAG	1 cut(s)	1635
AflII	CTTAAG	1 cut(s)	3806
AflIII	ACRYGT	1 cut(s)	2243
AhdI	GACNNNNNGTC	1 cut(s)	3333
AhlI	ACTAGT	1 cut(s)	1967
AjnI	CCWGG	5 cut(s)	1289, 3829, 4222, 5293, 5307
AjuI	GAANNNNNNNTTGG	4 cut(s)	1754, 1786, 5004, 5036
AleI	CACNNNNGTG	1 cut(s)	4139
AloI	GAACNNNNNNTCC	2 cut(s)	2420, 2452
Alw21I	GWGCWC	3 cut(s)	1135, 1770, 4811
Alw26I	GTCTC	7 cut(s)	98, 1202, 1447, 1917, 2517, 2763, 5441
Alw44I	GTGCAC	1 cut(s)	4807
AlwI	GGATC	7 cut(s)	1973, 1986, 2350, 2531, 4649, 4691, 4704
AlwNI	CAGNNNCTG	3 cut(s)	187, 3216, 4109
Ama87I	CYCGRG	1 cut(s)	337
Aor13HI	TCCGGA	1 cut(s)	1175
ApaLI	GTGCAC	1 cut(s)	4807
ApoI	RAATTY	5 cut(s)	137, 1183, 3020, 3104, 3796
AseI	ATTAAT	1 cut(s)	2009
Asp700I	GAANNNNTTC	2 cut(s)	1809, 3815
Asp718I	GGTACC	1 cut(s)	218
AspLEI	GCGC	4 cut(s)	705, 926, 1995, 3152
AsuC2I	CCSGG	1 cut(s)	2947
AsuHPI	GGTGA	6 cut(s)	1074, 1546, 1771, 3305, 4364, 5186
AsuII	TTCGAA	2 cut(s)	960, 2307
AvaI	CYCGRG	1 cut(s)	337
AxyI	CCTNAGG	1 cut(s)	2441
BaeGI	GKGCMC	2 cut(s)	2507, 4811
BalI	TGGCCA	1 cut(s)	2102
BamHI	GGATCC	2 cut(s)	1978, 4696
BanI	GGYRCC	2 cut(s)	218, 5024
BanII	GRGCYC	1 cut(s)	4086
BauI	CACGAG	2 cut(s)	615, 5079
BbsI	GAAGAC	2 cut(s)	977, 4331
Bbv12I	GWGCWC	3 cut(s)	1135, 1770, 4811
BbvCI	CCTCAGC	3 cut(s)	1728, 2070, 4536
BceAI	ACGGC	2 cut(s)	1104, 3365
BcgI	CGANNNNNNTGC	6 cut(s)	1606, 1640, 4798, 4832, 5180, 5214
BciT130I	CCWGG	5 cut(s)	1291, 3831, 4224, 5295, 5309
BciVI	GTATCC	6 cut(s)	496, 1296, 1393, 2985, 4064, 4230
BclI	TGATCA	5 cut(s)	117, 708, 2857, 3166, 3688
BcnI	CCSGG	1 cut(s)	2947
BcoDI	GTCTC	7 cut(s)	98, 1202, 1447, 1917, 2517, 2763, 5441
BcuI	ACTAGT	1 cut(s)	1967
BfmI	CTRYAG	6 cut(s)	436, 2646, 2805, 3375, 3429, 4662
BfrI	CTTAAG	1 cut(s)	3806
BfuAI	ACCTGC	2 cut(s)	230, 3091
BfuI	GTATCC	6 cut(s)	496, 1296, 1393, 2985, 4064, 4230
BglI	GCCNNNNNGGC	2 cut(s)	2099, 2204
Bme1390I	CCNGG	6 cut(s)	1291, 2947, 3831, 4224, 5295, 5309
BmeRI	GACNNNNNGTC	1 cut(s)	3333
BmeT110I	CYCGRG	1 cut(s)	337
BmiI	GGNNCC	8 cut(s)	220, 991, 992, 1980, 3081, 4174, 4698, 5026
BmrFI	CCNGG	6 cut(s)	1291, 2947, 3831, 4224, 5295, 5309
BmrI	ACTGGG	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	410
BoxI	GACNNNNGTC	1 cut(s)	3620
BpiI	GAAGAC	2 cut(s)	977, 4331
BpmI	CTGGAG	5 cut(s)	440, 1336, 1911, 3813, 5465
Bpu10I	CCTNAGC	3 cut(s)	1728, 2070, 4536
Bpu14I	TTCGAA	2 cut(s)	960, 2307
BpuEI	CTTGAG	7 cut(s)	2822, 2828, 4010, 4511, 4782, 4913, 5344
BpuMI	CCSGG	1 cut(s)	2947
Bsa29I	ATCGAT	2 cut(s)	359, 5268
BsaAI	YACGTR	1 cut(s)	2906
BsaI	GGTCTC	2 cut(s)	2763, 5441
BsaJI	CCNNGG	5 cut(s)	566, 1289, 4413, 5308, 5407
BsaWI	WCCGGW	2 cut(s)	91, 1175
BsaXI	ACNNNNNCTCC	6 cut(s)	255, 285, 1334, 1364, 2420, 2450
Bse1I	ACTGG	9 cut(s)	405, 640, 1353, 3136, 3586, 3867, 3928, 4354, 5434
Bse21I	CCTNAGG	1 cut(s)	2441
Bse3DI	GCAATG	6 cut(s)	801, 1065, 1401, 2687, 5216, 5307
BseAI	TCCGGA	1 cut(s)	1175
BseBI	CCWGG	5 cut(s)	1291, 3831, 4224, 5295, 5309
BseCI	ATCGAT	2 cut(s)	359, 5268
BseDI	CCNNGG	5 cut(s)	566, 1289, 4413, 5308, 5407
BseMI	GCAATG	6 cut(s)	801, 1065, 1401, 2687, 5216, 5307
BseMII	CTCAG	9 cut(s)	1742, 2061, 2256, 2432, 2499, 3045, 3716, 4527, 4618
BseNI	ACTGG	9 cut(s)	405, 640, 1353, 3136, 3586, 3867, 3928, 4354, 5434
BseRI	GAGGAG	2 cut(s)	1712, 2444
BseSI	GKGCMC	2 cut(s)	2507, 4811
BseYI	CCCAGC	3 cut(s)	492, 4319, 4860
BsgI	GTGCAG	3 cut(s)	1820, 2172, 3188
Bsh1236I	CGCG	3 cut(s)	574, 703, 926
Bsh1285I	CGRYCG	1 cut(s)	4635
BshNI	GGYRCC	2 cut(s)	218, 5024
BshVI	ATCGAT	2 cut(s)	359, 5268
BsiEI	CGRYCG	1 cut(s)	4635
BsiHKAI	GWGCWC	3 cut(s)	1135, 1770, 4811
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	3 cut(s)	92, 1176, 2947
BslFI	GGGAC	7 cut(s)	587, 1003, 3093, 3533, 3750, 4387, 4842
BsmAI	GTCTC	7 cut(s)	98, 1202, 1447, 1917, 2517, 2763, 5441
BsmFI	GGGAC	7 cut(s)	587, 1003, 3093, 3533, 3750, 4387, 4842
BsmI	GAATGC	1 cut(s)	2725
Bso31I	GGTCTC	2 cut(s)	2763, 5441
BsoBI	CYCGRG	1 cut(s)	337
Bsp119I	TTCGAA	2 cut(s)	960, 2307
Bsp1286I	GDGCHC	5 cut(s)	1135, 1770, 2507, 4086, 4811
Bsp13I	TCCGGA	1 cut(s)	1175
Bsp19I	CCATGG	1 cut(s)	566
BspCNI	CTCAG	9 cut(s)	1741, 2062, 2257, 2433, 2500, 3044, 3715, 4528, 4617
BspDI	ATCGAT	2 cut(s)	359, 5268
BspEI	TCCGGA	1 cut(s)	1175
BspFNI	CGCG	3 cut(s)	574, 703, 926
BspHI	TCATGA	3 cut(s)	234, 277, 2533
BspLI	GGNNCC	8 cut(s)	220, 991, 992, 1980, 3081, 4174, 4698, 5026
BspMAI	CTGCAG	3 cut(s)	440, 2809, 3379
BspMI	ACCTGC	2 cut(s)	230, 3091
BspPI	GGATC	7 cut(s)	1973, 1986, 2350, 2531, 4649, 4691, 4704
BspQI	GCTCTTC	2 cut(s)	1587, 3873
BspT104I	TTCGAA	2 cut(s)	960, 2307
BspT107I	GGYRCC	2 cut(s)	218, 5024
BspTI	CTTAAG	1 cut(s)	3806
BspTNI	GGTCTC	2 cut(s)	2763, 5441
BsrDI	GCAATG	6 cut(s)	801, 1065, 1401, 2687, 5216, 5307
BsrI	ACTGG	9 cut(s)	405, 640, 1353, 3136, 3586, 3867, 3928, 4354, 5434
BssECI	CCNNGG	5 cut(s)	566, 1289, 4413, 5308, 5407
BssSI	CACGAG	2 cut(s)	615, 5079
BssT1I	CCWWGG	3 cut(s)	566, 4413, 5407
Bst2BI	CACGAG	2 cut(s)	615, 5079
Bst2UI	CCWGG	5 cut(s)	1291, 3831, 4224, 5295, 5309
Bst6I	CTCTTC	6 cut(s)	66, 96, 1587, 1895, 3873, 4034
BstAFI	CTTAAG	1 cut(s)	3806
BstAPI	GCANNNNNTGC	4 cut(s)	2195, 2759, 3419, 5051
BstBAI	YACGTR	1 cut(s)	2906
BstBI	TTCGAA	2 cut(s)	960, 2307
BstDSI	CCRYGG	1 cut(s)	566
BstENI	CCTNNNNNAGG	3 cut(s)	1253, 1650, 4127
BstFNI	CGCG	3 cut(s)	574, 703, 926
BstHHI	GCGC	4 cut(s)	705, 926, 1995, 3152
BstMAI	GTCTC	7 cut(s)	98, 1202, 1447, 1917, 2517, 2763, 5441
BstMCI	CGRYCG	1 cut(s)	4635
BstNI	CCWGG	5 cut(s)	1291, 3831, 4224, 5295, 5309
BstNSI	RCATGY	5 cut(s)	158, 2247, 3227, 4241, 4583
BstPAI	GACNNNNGTC	1 cut(s)	3620
BstSCI	CCNGG	6 cut(s)	1289, 2945, 3829, 4222, 5293, 5307
BstSFI	CTRYAG	6 cut(s)	436, 2646, 2805, 3375, 3429, 4662
BstSLI	GKGCMC	2 cut(s)	2507, 4811
BstUI	CGCG	3 cut(s)	574, 703, 926
BstV2I	GAAGAC	2 cut(s)	977, 4331
BstX2I	RGATCY	3 cut(s)	1978, 4654, 4696
BstXI	CCANNNNNNTGG	2 cut(s)	2492, 3593
BstYI	RGATCY	3 cut(s)	1978, 4654, 4696
Bsu15I	ATCGAT	2 cut(s)	359, 5268
Bsu36I	CCTNAGG	1 cut(s)	2441
BsuI	GTATCC	6 cut(s)	496, 1296, 1393, 2985, 4064, 4230
BsuTUI	ATCGAT	2 cut(s)	359, 5268
BtgI	CCRYGG	1 cut(s)	566
BtgZI	GCGATG	1 cut(s)	5398
BtsI	GCAGTG	3 cut(s)	445, 2193, 4770
BveI	ACCTGC	2 cut(s)	230, 3091
CaiI	CAGNNNCTG	3 cut(s)	187, 3216, 4109
CciI	TCATGA	3 cut(s)	234, 277, 2533
CfoI	GCGC	4 cut(s)	705, 926, 1995, 3152
ClaI	ATCGAT	2 cut(s)	359, 5268
CseI	GACGC	1 cut(s)	580
CspCI	CAANNNNNGTGG	2 cut(s)	2992, 3027
DraI	TTTAAA	1 cut(s)	4869
DriI	GACNNNNNGTC	1 cut(s)	3333
EaeI	YGGCCR	2 cut(s)	1854, 2100
Eam1104I	CTCTTC	6 cut(s)	66, 96, 1587, 1895, 3873, 4034
Eam1105I	GACNNNNNGTC	1 cut(s)	3333
EarI	CTCTTC	6 cut(s)	66, 96, 1587, 1895, 3873, 4034
Eco130I	CCWWGG	3 cut(s)	566, 4413, 5407
Eco147I	AGGCCT	1 cut(s)	3905
Eco24I	GRGCYC	1 cut(s)	4086
Eco31I	GGTCTC	2 cut(s)	2763, 5441
Eco32I	GATATC	3 cut(s)	1620, 1738, 4731
Eco57I	CTGAAG	1 cut(s)	1635
Eco81I	CCTNAGG	1 cut(s)	2441
Eco88I	CYCGRG	1 cut(s)	337
EcoNI	CCTNNNNNAGG	3 cut(s)	1253, 1650, 4127
EcoO109I	RGGNCCY	3 cut(s)	287, 990, 3080
EcoRII	CCWGG	5 cut(s)	1289, 3829, 4222, 5293, 5307
EcoRV	GATATC	3 cut(s)	1620, 1738, 4731
EcoT14I	CCWWGG	3 cut(s)	566, 4413, 5407
EcoT22I	ATGCAT	2 cut(s)	1481, 5056
EcoT38I	GRGCYC	1 cut(s)	4086
ErhI	CCWWGG	3 cut(s)	566, 4413, 5407
FalI	AAGNNNNNCTT	6 cut(s)	1754, 1786, 2580, 2612, 4473, 4505
FaqI	GGGAC	7 cut(s)	587, 1003, 3093, 3533, 3750, 4387, 4842
FauI	CCCGC	2 cut(s)	1158, 2771
FauNDI	CATATG	3 cut(s)	808, 3515, 4972
FbaI	TGATCA	5 cut(s)	117, 708, 2857, 3166, 3688
FblI	GTMKAC	1 cut(s)	3614
FriOI	GRGCYC	1 cut(s)	4086
GlaI	GCGC	4 cut(s)	704, 925, 1994, 3151
GsaI	CCCAGC	3 cut(s)	496, 4323, 4864
GsuI	CTGGAG	5 cut(s)	440, 1336, 1911, 3813, 5465
HapII	CCGG	3 cut(s)	92, 1176, 2947
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	4 cut(s)	705, 926, 1995, 3152
Hin6I	GCGC	4 cut(s)	703, 924, 1993, 3150
HinP1I	GCGC	4 cut(s)	703, 924, 1993, 3150
HincII	GTYRAC	7 cut(s)	1540, 1840, 2712, 3338, 3615, 4347, 4427
HindII	GTYRAC	7 cut(s)	1540, 1840, 2712, 3338, 3615, 4347, 4427
HindIII	AAGCTT	2 cut(s)	2279, 4940
HpaII	CCGG	3 cut(s)	92, 1176, 2947
HphI	GGTGA	6 cut(s)	1074, 1546, 1771, 3305, 4364, 5186
Hpy99I	CGWCG	1 cut(s)	3787
HpyCH4IV	ACGT	5 cut(s)	123, 2905, 3442, 3674, 3874
HpySE526I	ACGT	5 cut(s)	123, 2905, 3442, 3674, 3874
HspAI	GCGC	4 cut(s)	703, 924, 1993, 3150
KflI	GGGWCCC	1 cut(s)	990
Kpn2I	TCCGGA	1 cut(s)	1175
KpnI	GGTACC	1 cut(s)	222
Ksp22I	TGATCA	5 cut(s)	117, 708, 2857, 3166, 3688
LguI	GCTCTTC	2 cut(s)	1587, 3873
LmnI	GCTCC	7 cut(s)	184, 263, 1152, 1462, 1598, 1765, 4316
MaeII	ACGT	5 cut(s)	123, 2905, 3442, 3674, 3874
MaeIII	GTNAC	8 cut(s)	878, 1373, 2416, 2869, 3292, 3919, 3962, 4111
MfeI	CAATTG	5 cut(s)	2781, 3054, 3648, 4638, 4701
MflI	RGATCY	3 cut(s)	1978, 4654, 4696
MhlI	GDGCHC	5 cut(s)	1135, 1770, 2507, 4086, 4811
MlsI	TGGCCA	1 cut(s)	2102
MluNI	TGGCCA	1 cut(s)	2102
MlyI	GAGTC	6 cut(s)	464, 2519, 2873, 3732, 3846, 5027
MmeI	TCCRAC	6 cut(s)	30, 635, 1130, 2239, 2969, 4810
Mox20I	TGGCCA	1 cut(s)	2102
Mph1103I	ATGCAT	2 cut(s)	1481, 5056
MroI	TCCGGA	1 cut(s)	1175
MroXI	GAANNNNTTC	2 cut(s)	1809, 3815
MscI	TGGCCA	1 cut(s)	2102
MslI	CAYNNNNRTG	5 cut(s)	1371, 2151, 3514, 3746, 4139
Msp20I	TGGCCA	1 cut(s)	2102
MspA1I	CMGCKG	1 cut(s)	435
MspCI	CTTAAG	1 cut(s)	3806
MspI	CCGG	3 cut(s)	92, 1176, 2947
MspR9I	CCNGG	6 cut(s)	1291, 2947, 3831, 4224, 5295, 5309
MunI	CAATTG	5 cut(s)	2781, 3054, 3648, 4638, 4701
Mva1269I	GAATGC	1 cut(s)	2725
MvaI	CCWGG	5 cut(s)	1291, 3831, 4224, 5295, 5309
MvnI	CGCG	3 cut(s)	574, 703, 926
NciI	CCSGG	1 cut(s)	2947
NcoI	CCATGG	1 cut(s)	566
NdeI	CATATG	3 cut(s)	808, 3515, 4972
NlaIV	GGNNCC	8 cut(s)	220, 991, 992, 1980, 3081, 4174, 4698, 5026
NmeAIII	GCCGAG	1 cut(s)	4973
NmuCI	GTSAC	5 cut(s)	878, 1373, 2416, 3292, 4111
NsiI	ATGCAT	2 cut(s)	1481, 5056
NspI	RCATGY	5 cut(s)	158, 2247, 3227, 4241, 4583
NspV	TTCGAA	2 cut(s)	960, 2307
OliI	CACNNNNGTG	1 cut(s)	4139
PaeI	GCATGC	3 cut(s)	3227, 4241, 4583
PagI	TCATGA	3 cut(s)	234, 277, 2533
PceI	AGGCCT	1 cut(s)	3905
PciI	ACATGT	1 cut(s)	2243
PciSI	GCTCTTC	2 cut(s)	1587, 3873
PctI	GAATGC	1 cut(s)	2725
PdmI	GAANNNNTTC	2 cut(s)	1809, 3815
PflFI	GACNNNGTC	1 cut(s)	109
PfoI	TCCNGGA	2 cut(s)	3829, 4222
PleI	GAGTC	6 cut(s)	464, 2518, 2872, 3732, 3846, 5027
PpsI	GAGTC	6 cut(s)	464, 2518, 2872, 3732, 3846, 5027
Ppu21I	YACGTR	1 cut(s)	2906
PpuMI	RGGWCCY	3 cut(s)	287, 990, 3080
PscI	ACATGT	1 cut(s)	2243
PshAI	GACNNNNGTC	1 cut(s)	3620
PshBI	ATTAAT	1 cut(s)	2009
PsiI	TTATAA	4 cut(s)	479, 1949, 2586, 3776
Psp5II	RGGWCCY	3 cut(s)	287, 990, 3080
Psp6I	CCWGG	5 cut(s)	1289, 3829, 4222, 5293, 5307
PspFI	CCCAGC	3 cut(s)	492, 4319, 4860
PspGI	CCWGG	5 cut(s)	1289, 3829, 4222, 5293, 5307
PspN4I	GGNNCC	8 cut(s)	220, 991, 992, 1980, 3081, 4174, 4698, 5026
PspPPI	RGGWCCY	3 cut(s)	287, 990, 3080
PstI	CTGCAG	3 cut(s)	440, 2809, 3379
PstNI	CAGNNNCTG	3 cut(s)	187, 3216, 4109
PsuI	RGATCY	3 cut(s)	1978, 4654, 4696
PsyI	GACNNNGTC	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	435
RseI	CAYNNNNRTG	5 cut(s)	1371, 2151, 3514, 3746, 4139
SalI	GTCGAC	1 cut(s)	3613
SapI	GCTCTTC	2 cut(s)	1587, 3873
SchI	GAGTC	6 cut(s)	464, 2519, 2873, 3732, 3846, 5027
ScrFI	CCNGG	6 cut(s)	1291, 2947, 3831, 4224, 5295, 5309
SduI	GDGCHC	5 cut(s)	1135, 1770, 2507, 4086, 4811
SfcI	CTRYAG	6 cut(s)	436, 2646, 2805, 3375, 3429, 4662
SfuI	TTCGAA	2 cut(s)	960, 2307
SmiMI	CAYNNNNRTG	5 cut(s)	1371, 2151, 3514, 3746, 4139
SmlI	CTYRAG	8 cut(s)	2837, 2843, 3806, 4025, 4490, 4797, 4892, 5323
SmoI	CTYRAG	8 cut(s)	2837, 2843, 3806, 4025, 4490, 4797, 4892, 5323
SpeI	ACTAGT	1 cut(s)	1967
SphI	GCATGC	3 cut(s)	3227, 4241, 4583
SseBI	AGGCCT	1 cut(s)	3905
SspI	AATATT	5 cut(s)	1333, 1681, 1779, 4469, 5226
StuI	AGGCCT	1 cut(s)	3905
StyD4I	CCNGG	6 cut(s)	1289, 2945, 3829, 4222, 5293, 5307
StyI	CCWWGG	3 cut(s)	566, 4413, 5407
TaiI	ACGT	5 cut(s)	126, 2908, 3445, 3677, 3877
TaqII	GACCGA	1 cut(s)	4621
TatI	WGTACW	3 cut(s)	667, 1227, 5421
TauI	GCSGC	2 cut(s)	491, 5137
TseFI	GTSAC	5 cut(s)	878, 1373, 2416, 3292, 4111
Tsp45I	GTSAC	5 cut(s)	878, 1373, 2416, 3292, 4111
TspGWI	ACGGA	6 cut(s)	573, 584, 1720, 3654, 4382, 5407
Tth111I	GACNNNGTC	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	3806
VneI	GTGCAC	1 cut(s)	4807
VspI	ATTAAT	1 cut(s)	2009
XagI	CCTNNNNNAGG	3 cut(s)	1253, 1650, 4127
XapI	RAATTY	5 cut(s)	137, 1183, 3020, 3104, 3796
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	5 cut(s)	158, 2247, 3227, 4241, 4583
XcmI	CCANNNNNNNNNTGG	3 cut(s)	2200, 3143, 5315
XmiI	GTMKAC	1 cut(s)	3614
XmnI	GAANNNNTTC	2 cut(s)	1809, 3815
Zsp2I	ATGCAT	2 cut(s)	1481, 5056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.