Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Forward (+)

28422204 .. 28445585

Gene Structure 23382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG285700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5556 bp

ATGTTGATGCTCATAGCTGTAAGGACACATGTTGATACGCAGATTCACCCTTCACAGCCATATATCCGGAAAGGGATGTTGGTGGAAGTGGGCAAAGGAATATCCCCTAATTTTGAGCAAGTGTTGGAATTACTATTGAAGAAGGAAGAGATTTTGGCTTTTGCACCAGACACAAAAGAGACAAGGTCAATGATCAACGTGATGTCGATGAAATTTCCTCTCTTGAAGTGTGTTTCTAGAGTTTACAAAGATGAGCAGGAGCTGGAAACCTATATACGCTCAAATCTCTATGGTACCTGCAATCAAATCATGAATTGCTCGAACCCAAAAATCAAAGGAGCAGTAGTATTTCACGATCAAGGTCCTCAACTTTTCGATTATAGCATACGTCTTAATCACACATGGGCTTTCTCGGGATTTCCTGATGTTAAATCGATCATGGACACAAATGGTCCTTACTTAAATGACTTGGAACTGGGCGTGAGTACTGTACCGACAATGCAATACAGCTGCAGTGGATTTTTAACTCTCCAGCAAGCACTAGACTCTTTTATAATTTTTGCGGCCCAGCAATCGGATACCAGAAATATAGAACTTCCTACTTCGCTGTCCTCTAGCACACCTTCCTCTCTCAAAGTTCCATGGACGCGATATGGTCCGTCAAACATCCGTATAGTCCCGTTTCCAACTCGTGAATACACTGATGATGAGTTCCAGTCCATCATAAAAAGTGTCATGGGTGTACTGTATCTTTTGGGATTTCTCTATCCAATTTCGCGCTTGATCAGCTATTCTGTGTTTGAGAAGGAACAAAAGATAAGAGAAGGTCTTTATATGATGGGGTTGAAAGATGGGGTATTCCATCTATCGTGGTTCATTGCATATGCTTTGCAGTTCGCAGTTTCTTCTCTTATTATTACAGTTTGCACGATGGATAACCTTTTCAAGTATAGTGACAAGTCAGTGGTGTTCATTTACTTCTTCTTTTTCGGAATAAGCGCGATTATGCTGTCATTTTTAATCTCTACATTCTTCGAACGAGCGAAGACAGCGGTTGCGGTTGGGACCCTTGCTTTCTTGGGTGCTTTTTTCCCATACTACTCTGTCAATGACGAGTCTGTTCCTATGATTCTAAAGGTCATTGCCTCTCTGCTTTCACCTACGGCTTTTGCTCTGGGGTCAATCAACTTTGCTGATTATGAGCATGCTCATGTTGGCCTTCGTTGGAGCAATATATGGCGGGCATCATCCGGAGTGAATTTTTCAGTCTGTCTCCTGATGATGCTGCTCGATGCGTTGCTGTACTGTGTAATTGGTCTTTACCTAGATAAGGTACTTCCGAGAGAGAATGGAGTTAGGTATCCCTGGAACTTCATTTTTCAGAAGTGCTTTTGGAAGAATCCAAATATTAACAAACACCACAACTCCAGTCCAGAAGTTCATATTCGTGACAAGGTATCCCAGAAGGCAATGTTTTCTCGGAAAGAAAATGCTAAAGCTGCTGTGGAAGCAATAACCTTCGATATGAGACAACAAGAGCTTGACCATAGATGCATCCAAATAAGGAATCTGCATAAGGTTTATGCTAGTAAAAAGGGGAAATGTTGTGCTGTCAACTCATTACAGCTCACCATGTATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAAAGCACAACGATATCAATGCTTGTTGGCCTTCTTCGTCCTACTTCAGGGGATGCTATGGTGTTTGGAAAAAATATTATGACAGACATGGAGGAGATACGGAAAGAGTTGGGTGTATGCCCTCAGCATGATATCCTTTTTCCAGAATTGACGGTGAAGGAGCACTTGGAAATATTTGCTATATTGAAAGGTGTGCAGGAAGATTTTCTGAACAGCGTTGTTATTGATATGGTTGACCAAGTAGGGTTGGCCGATAAAATCAACACTGCTGTTATGGCTCTTTCTGGAGGAATGAAGAGGAAGTTGTCTCTTGGAATTGCACTAATTGGAAATAGTAAGGTTATAATTCTTGATGAACCTACTAGTGGAATGGATCCATACTCTATGCGCTTGACTTGGCAATTAATAAAAAAGATTAGAAAGGGCAGGATAGTATTACTGACAACACACTCAATGGATGAAGCTGAGGCACTTGGAGATCGCATAGCCATCATGGCCAATGGTTCTTTGAAATGCTGCGGAAGTTCCCTTTTCTTGAAGCATCAGTATGGGGTTGGTTATACTCTAACTCTAGTGAAGTCTGCACCCACTGCCTCTATGGCTGCTGATATTGTTTACCGCCATATCCCATCAGCAACATGTGTGAGTGAGGTTGGAACTGAGATTTCCTTTAAGCTTCCATTGGCATCCTCAACATCCTTCGAAAGTATGTTTAGAGAAATTGAGAGTTGCATGGGATCATCCACATCAAACTTAGAAACAAGTTGTGATGAGAAGGACTATATTGGCATTGAAAGTTATGGCATATCTGTCACAACTTTGGAGGAGGTGTTCCTGAGGGTTGCAGGATGCGATTATGACGAAGCTGCTTGTTTTGACCAGAAGAATGGTCCACTGTGCCCTGAGTCTCTGATTTCTCAAACTTCTCATGATCCTACCCACAAACAGATTCTTCACTCGAAGAAATCTTTTGCTTATTATAAAGAGATTCTTGGGGTCTTATTTACAATGGTGGGAAGAGCCTGTGGTTTAATTTTTGCTACAGTGTTAAGTTTCTTAAACTTCTTAGGTGTGCAATGCTGTGGCTGTTGTATCATTTCAAGGTCAACATTTTGGAGGCATTCTAAAGCATTATTCAAAAAGAGGGCAATATCTGCCCGCAGAGACCGTAAAACAATTGTTTTCCAGCTTGTAATTCCTGCAGTTTTCTTATTTTTTGGTCTTTTATTTCTCAAGCTCAAGCCACATCCTGATCAGGAGTCTGTTACCTTCACAACTTCACATTTTAATCCACTATTACGTGGTGGTGGTGGTGGTGGTCCAATTCCTTTTGATCTATCCCGGCCTATTGCACAGGAGGTTGCAGAATACATAGAAGGGGGTTGGATACAAACCTTCAAACCTAGTGGGTATAAATTCCCCAACTCAGAGAAGGCATTGAATGATGCAATTGAGGTAGCAGGGGAAACTCTGGGACCTGCTTTACTTTCAATGAGTGAATTTTTGATGTCCAGCTTTAATGAATCTTACCAGTCAAGGTATGGCGCAGTTGTGATGGATGATCAGAGTGATGATGGGAGTTTAGGGTACACTGTGCTACACAACAGTTCCTGTCAGCATGCTGCCCCAACCTTTATCAATTTAGTAAATGCTGCAATTCTTCGGCTTGCTTCTCGTAATAAGAATGTGACAATTCAAACACGCAATCACCCTTTGCCAATGACAAAAAGTCAACATCTGCAACGGCATGATTTGGATGCTTTCTCTGCTGCAGTTATTGTTAGTATCGCCTTCTCCTTCATTCCTGCGTCATTTGCTGTTCCTATAGTGAAGGAACGTGAAGTAAAAGCTAAACACCAACAACTTATTAGTGGAGTTTCCGTACTGTCATATTGGACTTCTACATACATATGGGACTTCATCAGTTTCCTCTTTCCTTCATCTTTTGCCATAGTTCTTTTTTACATATTTGGTCTGGACCAGTTTATTGGAAGGGGATGTTTACTGTCGACTGTTGTCATGTTTTTAGCATACGGATTAGCAATTGCATCATCAACATACTGCCTTACGTTTTTCTTTTCTGATCACACTATGGCTCAGAATGTGGTTCTCTTGGTCCACTTTTTCACGGGACTCATTCTTATGGTTATCTCATTCATTATGGGGCTTATAAAGACGACGACAAGTGCAAATTCTTTTCTTAAGAACTTTTTCAGATTATCTCCAGGATTTTGCTTTGCTGACGGACTCGCTTCACTGGCTCTTCTACGTCAAGATATGAAAAATAAAAGCAATAAGGCCTTTGATTGGAATGTTACTGGTGGCTCAATCTGCTACCTTTGTATTGAGAGCATTTGTTACTTCCTTTTGGCACTTGGTCTTGAAATCTTGCCTTTCAATAAATTGACACTAGCCACACTCAAGGAGTGGTGGAAGAGTATTAAAAGTATCCCACCTAGCACTTCAAGTTATCGAGAGCCCCTTCTGACTTCTTCCGCAGAATCTGTCACTCTGGACCTTGATGAGGACACAGATGTGAAGGCAGAAAGAACTAGGGTACTTTCAGGTTCCATTGACAATGCCATCATCTACTTGCGTAATCTTCGTAAGGTGTATCCAGGAGGACAGCAGCATGCTACAAAGGTTGCGGTACATTCATTGACTTTTTCAGTTCAAGAAGGAGAATGTTTCGGTTTTTTAGGAACAAATGGAGCTGGGAAGACCACAACTCTGTCTATGTTGACTGGTGAGGAATCTCCTACGGATGGGACTGCTTGTATATTTGGCAAGGATATTTCCTCCAATCCCAAGGCTGCTCGTCAACATATTGGGTTTTGCCCACAGTTTGATGCTCTGTTAGAATATTTAACTGTTCAAGAGCATCTTGAGCTTTATGCCACGATAAAAGGAGTACCAGATAATAAGATAGCTGAGGTTGTAATGGAAAAGTTGGTGGAGTTTGACTTGTTAAAGCATGCCAGCAAACCATCATTTTCCCTCAGTGGGGGAAACAAGCGAAAATTATCTGTTGCAATTGCTATGATTGGAGATCCTCCTATAGTTATTCTTGATGAACCATCAACAGGTATGGATCCAATTGCCAAAAGATTCATGTGGGAAGTGATATCTCGTTTATCGACCAGACGAGGAAAGACAGCAGTGATACTGACTACCCATAGTATGAATGAAGCTCAAGCTCTGTGCACCCGTATCGGAATCATGGTTGGAGGCCAATTACGGTGCATTGGAAGTCCCCAACATTTAAAAACTCGATTTGGAAATCATCTTGAGCTAGAGGTTAAACCTATTGAAGTCAGCTCTGTGGACTTGGACAAGCTTTGCCGAGTTATCCAAGAAAGCCTCTCATATGTTCCTTCTCATCCAATGAGCTTACTTGATGGCCTTGAAGTCTGCATTGGTGCCACTGACTCCATTGTGGCAGAAAATGCATCGGTGGCAGAGATTAGTTTATCACGAGAAATGATAATTATGATTGGACGATGGCTTGGGAATGAAGAAAGAATAAAGCCGCTTATATCTTCAACACCACTTTCAGATGGGGTGCTTGGTGAACAGTTATTTGAGCAGTTAGATCGAGATGGTGGGATACCGTTGCCAATATTTTCTGAATGGTGGCTGTTCAATGACAAGTTTTCAGCAATCGATTCATTTGTCCTATCATCATTTCCTGGTGCAATGTTCCAGGGAATGAATGGCTTGAGTGTTAAATATCAGTTGCCTTGTGGTCCGCACCTCTCTCTTGCTGATGTATTTGGACACCTTGAACGGAAAAGAAACCGCCTTGGCATCGCAGAGTACAGTATTAGCCAGTCCACTCTGGAGAGCATATTCAATCATTTTGCAGCCAACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

1851

Amino Acids

205.72

Weight (kDa)

7.01

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	175 - 440	7.1e-20	ABC-2 family transporter protein
ABC_tran	PF00005	539 - 682	1.3e-30	ABC transporter
ABC2_membrane_3	PF12698	951 - 1352	9.7e-41	ABC-2 family transporter protein
ABC_tran	PF00005	1445 - 1587	3.8e-28	ABC transporter
AAA_21	PF13304	1556 - 1622	9e-09	AAA domain, putative AbiEii toxin, Type IV TA system
R1_ABCA1	PF23321	1777 - 1837	1e-10	ABCA1-like, C-terminal R1 regulatory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	554, 2024, 2661, 3851
Acc36I	ACCTGC	2 cut(s)	305, 3166
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	2 cut(s)	293, 5099
AccI	GTMKAC	1 cut(s)	3689
AccII	CGCG	3 cut(s)	649, 778, 1001
AccIII	TCCGGA	2 cut(s)	66, 1250
AclWI	GGATC	7 cut(s)	2048, 2061, 2425, 2606, 4724, 4766, 4779
AcoI	YGGCCR	2 cut(s)	1929, 2175
AcsI	RAATTY	5 cut(s)	212, 1258, 3095, 3179, 3871
AcuI	CTGAAG	1 cut(s)	1710
AflII	CTTAAG	1 cut(s)	3881
AflIII	ACRYGT	2 cut(s)	28, 2318
AhdI	GACNNNNNGTC	1 cut(s)	3408
AhlI	ACTAGT	1 cut(s)	2042
AjnI	CCWGG	5 cut(s)	1364, 3904, 4297, 5368, 5382
AjuI	GAANNNNNNNTTGG	6 cut(s)	62, 94, 1829, 1861, 5079, 5111
AleI	CACNNNNGTG	1 cut(s)	4214
AloI	GAACNNNNNNTCC	2 cut(s)	2495, 2527
Alw21I	GWGCWC	2 cut(s)	1845, 4886
Alw26I	GTCTC	6 cut(s)	173, 1277, 1522, 1992, 2592, 2838
Alw44I	GTGCAC	1 cut(s)	4882
AlwI	GGATC	7 cut(s)	2048, 2061, 2425, 2606, 4724, 4766, 4779
AlwNI	CAGNNNCTG	3 cut(s)	262, 3291, 4184
Ama87I	CYCGRG	1 cut(s)	412
Aor13HI	TCCGGA	2 cut(s)	66, 1250
AoxI	GGCC	9 cut(s)	564, 1216, 1708, 1929, 2175, 3023, 3978, 4909, 5080
ApaLI	GTGCAC	1 cut(s)	4882
ApoI	RAATTY	5 cut(s)	212, 1258, 3095, 3179, 3871
AseI	ATTAAT	1 cut(s)	2084
Asp700I	GAANNNNTTC	2 cut(s)	1884, 3890
Asp718I	GGTACC	1 cut(s)	293
AspLEI	GCGC	4 cut(s)	780, 1001, 2070, 3227
AsuC2I	CCSGG	1 cut(s)	3022
AsuHPI	GGTGA	7 cut(s)	38, 1149, 1621, 1846, 3380, 4439, 5261
AsuII	TTCGAA	2 cut(s)	1035, 2382
AvaI	CYCGRG	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	2516
BaeGI	GKGCMC	2 cut(s)	2582, 4886
BalI	TGGCCA	1 cut(s)	2177
BamHI	GGATCC	2 cut(s)	2053, 4771
BanI	GGYRCC	2 cut(s)	293, 5099
BanII	GRGCYC	1 cut(s)	4161
BauI	CACGAG	2 cut(s)	690, 5154
BbsI	GAAGAC	2 cut(s)	1052, 4406
Bbv12I	GWGCWC	2 cut(s)	1845, 4886
BbvCI	CCTCAGC	3 cut(s)	1803, 2145, 4611
BceAI	ACGGC	2 cut(s)	1179, 3440
BcgI	CGANNNNNNTGC	6 cut(s)	1681, 1715, 4873, 4907, 5255, 5289
BciT130I	CCWGG	5 cut(s)	1366, 3906, 4299, 5370, 5384
BciVI	GTATCC	7 cut(s)	571, 1371, 1468, 3060, 4139, 4305, 5280
BclI	TGATCA	5 cut(s)	192, 783, 2932, 3241, 3763
BcnI	CCSGG	1 cut(s)	3022
BcoDI	GTCTC	6 cut(s)	173, 1277, 1522, 1992, 2592, 2838
BcuI	ACTAGT	1 cut(s)	2042
BfmI	CTRYAG	6 cut(s)	511, 2721, 2880, 3450, 3504, 4737
BfrI	CTTAAG	1 cut(s)	3881
BfuAI	ACCTGC	2 cut(s)	305, 3166
BfuI	GTATCC	7 cut(s)	571, 1371, 1468, 3060, 4139, 4305, 5280
BglI	GCCNNNNNGGC	2 cut(s)	2174, 2279
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	6 cut(s)	1366, 3022, 3906, 4299, 5370, 5384
BmeRI	GACNNNNNGTC	1 cut(s)	3408
BmeT110I	CYCGRG	1 cut(s)	412
BmiI	GGNNCC	8 cut(s)	295, 1066, 1067, 2055, 3156, 4249, 4773, 5101
BmrFI	CCNGG	6 cut(s)	1366, 3022, 3906, 4299, 5370, 5384
BmrI	ACTGGG	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	485
BoxI	GACNNNNGTC	1 cut(s)	3695
BpiI	GAAGAC	2 cut(s)	1052, 4406
BpmI	CTGGAG	5 cut(s)	515, 1411, 1986, 3888, 5540
Bpu10I	CCTNAGC	3 cut(s)	1803, 2145, 4611
Bpu14I	TTCGAA	2 cut(s)	1035, 2382
BpuEI	CTTGAG	7 cut(s)	2897, 2903, 4085, 4586, 4857, 4988, 5419
BpuMI	CCSGG	1 cut(s)	3022
Bsa29I	ATCGAT	2 cut(s)	434, 5343
BsaAI	YACGTR	1 cut(s)	2981
BsaI	GGTCTC	1 cut(s)	2838
BsaJI	CCNNGG	5 cut(s)	641, 1364, 4488, 5383, 5482
BsaWI	WCCGGW	2 cut(s)	66, 1250
BsaXI	ACNNNNNCTCC	8 cut(s)	330, 360, 1409, 1439, 2495, 2525, 3546, 3576
Bse1I	ACTGG	9 cut(s)	480, 715, 1428, 3211, 3661, 3942, 4003, 4429, 5509
Bse21I	CCTNAGG	1 cut(s)	2516
Bse3DI	GCAATG	5 cut(s)	876, 1140, 1476, 2762, 5382
BseAI	TCCGGA	2 cut(s)	66, 1250
BseBI	CCWGG	5 cut(s)	1366, 3906, 4299, 5370, 5384
BseCI	ATCGAT	2 cut(s)	434, 5343
BseDI	CCNNGG	5 cut(s)	641, 1364, 4488, 5383, 5482
BseMI	GCAATG	5 cut(s)	876, 1140, 1476, 2762, 5382
BseMII	CTCAG	9 cut(s)	1817, 2136, 2331, 2507, 2574, 3120, 3791, 4602, 4693
BseNI	ACTGG	9 cut(s)	480, 715, 1428, 3211, 3661, 3942, 4003, 4429, 5509
BseRI	GAGGAG	2 cut(s)	1787, 2519
BseSI	GKGCMC	2 cut(s)	2582, 4886
BseYI	CCCAGC	2 cut(s)	567, 4394
BsgI	GTGCAG	2 cut(s)	1895, 2247
Bsh1236I	CGCG	3 cut(s)	649, 778, 1001
BshFI	GGCC	9 cut(s)	566, 1218, 1710, 1931, 2177, 3025, 3980, 4911, 5082
BshNI	GGYRCC	2 cut(s)	293, 5099
BshVI	ATCGAT	2 cut(s)	434, 5343
BsiHKAI	GWGCWC	2 cut(s)	1845, 4886
BsiHKCI	CYCGRG	1 cut(s)	412
BsiSI	CCGG	3 cut(s)	67, 1251, 3022
BslFI	GGGAC	7 cut(s)	662, 1078, 3168, 3608, 3825, 4462, 4917
BsmAI	GTCTC	6 cut(s)	173, 1277, 1522, 1992, 2592, 2838
BsmFI	GGGAC	7 cut(s)	662, 1078, 3168, 3608, 3825, 4462, 4917
BsmI	GAATGC	1 cut(s)	2800
BsnI	GGCC	9 cut(s)	566, 1218, 1710, 1931, 2177, 3025, 3980, 4911, 5082
Bso31I	GGTCTC	1 cut(s)	2838
BsoBI	CYCGRG	1 cut(s)	412
Bsp119I	TTCGAA	2 cut(s)	1035, 2382
Bsp1286I	GDGCHC	4 cut(s)	1845, 2582, 4161, 4886
Bsp13I	TCCGGA	2 cut(s)	66, 1250
Bsp19I	CCATGG	1 cut(s)	641
BspANI	GGCC	9 cut(s)	566, 1218, 1710, 1931, 2177, 3025, 3980, 4911, 5082
BspCNI	CTCAG	9 cut(s)	1816, 2137, 2332, 2508, 2575, 3119, 3790, 4603, 4692
BspDI	ATCGAT	2 cut(s)	434, 5343
BspEI	TCCGGA	2 cut(s)	66, 1250
BspFNI	CGCG	3 cut(s)	649, 778, 1001
BspHI	TCATGA	2 cut(s)	309, 2608
BspLI	GGNNCC	8 cut(s)	295, 1066, 1067, 2055, 3156, 4249, 4773, 5101
BspMAI	CTGCAG	3 cut(s)	515, 2884, 3454
BspMI	ACCTGC	2 cut(s)	305, 3166
BspPI	GGATC	7 cut(s)	2048, 2061, 2425, 2606, 4724, 4766, 4779
BspQI	GCTCTTC	3 cut(s)	1662, 2692, 3948
BspT104I	TTCGAA	2 cut(s)	1035, 2382
BspT107I	GGYRCC	2 cut(s)	293, 5099
BspTI	CTTAAG	1 cut(s)	3881
BspTNI	GGTCTC	1 cut(s)	2838
BsrDI	GCAATG	5 cut(s)	876, 1140, 1476, 2762, 5382
BsrI	ACTGG	9 cut(s)	480, 715, 1428, 3211, 3661, 3942, 4003, 4429, 5509
BssECI	CCNNGG	5 cut(s)	641, 1364, 4488, 5383, 5482
BssSI	CACGAG	2 cut(s)	690, 5154
BssT1I	CCWWGG	3 cut(s)	641, 4488, 5482
Bst2BI	CACGAG	2 cut(s)	690, 5154
Bst2UI	CCWGG	5 cut(s)	1366, 3906, 4299, 5370, 5384
Bst6I	CTCTTC	6 cut(s)	141, 1662, 1970, 2692, 3948, 4109
BstAFI	CTTAAG	1 cut(s)	3881
BstAPI	GCANNNNNTGC	3 cut(s)	2270, 2834, 5126
BstBAI	YACGTR	1 cut(s)	2981
BstBI	TTCGAA	2 cut(s)	1035, 2382
BstC8I	GCNNGC	9 cut(s)	537, 1206, 1242, 2839, 3300, 3348, 4314, 4656, 4660
BstDSI	CCRYGG	1 cut(s)	641
BstENI	CCTNNNNNAGG	3 cut(s)	1328, 1725, 4202
BstFNI	CGCG	3 cut(s)	649, 778, 1001
BstHHI	GCGC	4 cut(s)	780, 1001, 2070, 3227
BstMAI	GTCTC	6 cut(s)	173, 1277, 1522, 1992, 2592, 2838
BstNI	CCWGG	5 cut(s)	1366, 3906, 4299, 5370, 5384
BstNSI	RCATGY	6 cut(s)	32, 1208, 2322, 3302, 4316, 4658
BstPAI	GACNNNNGTC	1 cut(s)	3695
BstSCI	CCNGG	6 cut(s)	1364, 3020, 3904, 4297, 5368, 5382
BstSFI	CTRYAG	6 cut(s)	511, 2721, 2880, 3450, 3504, 4737
BstSLI	GKGCMC	2 cut(s)	2582, 4886
BstUI	CGCG	3 cut(s)	649, 778, 1001
BstV2I	GAAGAC	2 cut(s)	1052, 4406
BstX2I	RGATCY	3 cut(s)	2053, 4729, 4771
BstXI	CCANNNNNNTGG	2 cut(s)	2567, 3668
BstYI	RGATCY	3 cut(s)	2053, 4729, 4771
Bsu15I	ATCGAT	2 cut(s)	434, 5343
Bsu36I	CCTNAGG	1 cut(s)	2516
BsuI	GTATCC	7 cut(s)	571, 1371, 1468, 3060, 4139, 4305, 5280
BsuRI	GGCC	9 cut(s)	566, 1218, 1710, 1931, 2177, 3025, 3980, 4911, 5082
BsuTUI	ATCGAT	2 cut(s)	434, 5343
BtgI	CCRYGG	1 cut(s)	641
BtgZI	GCGATG	1 cut(s)	5473
BtsI	GCAGTG	4 cut(s)	520, 1944, 2268, 4845
BveI	ACCTGC	2 cut(s)	305, 3166
Cac8I	GCNNGC	9 cut(s)	537, 1206, 1242, 2839, 3300, 3348, 4314, 4656, 4660
CaiI	CAGNNNCTG	3 cut(s)	262, 3291, 4184
CciI	TCATGA	2 cut(s)	309, 2608
CfoI	GCGC	4 cut(s)	780, 1001, 2070, 3227
ClaI	ATCGAT	2 cut(s)	434, 5343
CseI	GACGC	2 cut(s)	655, 3477
CspCI	CAANNNNNGTGG	2 cut(s)	3067, 3102
DraI	TTTAAA	1 cut(s)	4944
DriI	GACNNNNNGTC	1 cut(s)	3408
EaeI	YGGCCR	2 cut(s)	1929, 2175
Eam1104I	CTCTTC	6 cut(s)	141, 1662, 1970, 2692, 3948, 4109
Eam1105I	GACNNNNNGTC	1 cut(s)	3408
EarI	CTCTTC	6 cut(s)	141, 1662, 1970, 2692, 3948, 4109
Eco130I	CCWWGG	3 cut(s)	641, 4488, 5482
Eco147I	AGGCCT	1 cut(s)	3980
Eco24I	GRGCYC	1 cut(s)	4161
Eco31I	GGTCTC	1 cut(s)	2838
Eco32I	GATATC	3 cut(s)	1695, 1813, 4806
Eco57I	CTGAAG	1 cut(s)	1710
Eco81I	CCTNAGG	1 cut(s)	2516
Eco88I	CYCGRG	1 cut(s)	412
EcoNI	CCTNNNNNAGG	3 cut(s)	1328, 1725, 4202
EcoO109I	RGGNCCY	3 cut(s)	362, 1065, 3155
EcoRII	CCWGG	5 cut(s)	1364, 3904, 4297, 5368, 5382
EcoRV	GATATC	3 cut(s)	1695, 1813, 4806
EcoT14I	CCWWGG	3 cut(s)	641, 4488, 5482
EcoT22I	ATGCAT	2 cut(s)	1556, 5131
EcoT38I	GRGCYC	1 cut(s)	4161
ErhI	CCWWGG	3 cut(s)	641, 4488, 5482
FalI	AAGNNNNNCTT	6 cut(s)	1829, 1861, 2655, 2687, 4548, 4580
FaqI	GGGAC	7 cut(s)	662, 1078, 3168, 3608, 3825, 4462, 4917
FauI	CCCGC	2 cut(s)	1233, 2846
FauNDI	CATATG	3 cut(s)	883, 3590, 5047
FbaI	TGATCA	5 cut(s)	192, 783, 2932, 3241, 3763
FblI	GTMKAC	1 cut(s)	3689
FriOI	GRGCYC	1 cut(s)	4161
GlaI	GCGC	4 cut(s)	779, 1000, 2069, 3226
GsaI	CCCAGC	2 cut(s)	571, 4398
GsuI	CTGGAG	5 cut(s)	515, 1411, 1986, 3888, 5540
HaeIII	GGCC	9 cut(s)	566, 1218, 1710, 1931, 2177, 3025, 3980, 4911, 5082
HapII	CCGG	3 cut(s)	67, 1251, 3022
HgaI	GACGC	2 cut(s)	655, 3477
HhaI	GCGC	4 cut(s)	780, 1001, 2070, 3227
Hin6I	GCGC	4 cut(s)	778, 999, 2068, 3225
HinP1I	GCGC	4 cut(s)	778, 999, 2068, 3225
HincII	GTYRAC	7 cut(s)	1615, 1915, 2787, 3413, 3690, 4422, 4502
HindII	GTYRAC	7 cut(s)	1615, 1915, 2787, 3413, 3690, 4422, 4502
HindIII	AAGCTT	2 cut(s)	2354, 5015
HpaII	CCGG	3 cut(s)	67, 1251, 3022
HphI	GGTGA	7 cut(s)	38, 1149, 1621, 1846, 3380, 4439, 5261
Hpy99I	CGWCG	1 cut(s)	3862
HpyCH4IV	ACGT	6 cut(s)	198, 388, 2980, 3517, 3749, 3949
HpySE526I	ACGT	6 cut(s)	198, 388, 2980, 3517, 3749, 3949
HspAI	GCGC	4 cut(s)	778, 999, 2068, 3225
KflI	GGGWCCC	1 cut(s)	1065
Kpn2I	TCCGGA	2 cut(s)	66, 1250
KpnI	GGTACC	1 cut(s)	297
Ksp22I	TGATCA	5 cut(s)	192, 783, 2932, 3241, 3763
LguI	GCTCTTC	3 cut(s)	1662, 2692, 3948
LmnI	GCTCC	6 cut(s)	259, 338, 1227, 1673, 1840, 4391
MaeII	ACGT	6 cut(s)	198, 388, 2980, 3517, 3749, 3949
MaeIII	GTNAC	8 cut(s)	953, 1448, 2491, 2944, 3367, 3994, 4037, 4186
MfeI	CAATTG	5 cut(s)	2856, 3129, 3723, 4713, 4776
MflI	RGATCY	3 cut(s)	2053, 4729, 4771
MhlI	GDGCHC	4 cut(s)	1845, 2582, 4161, 4886
MlsI	TGGCCA	1 cut(s)	2177
MluNI	TGGCCA	1 cut(s)	2177
MlyI	GAGTC	7 cut(s)	539, 1124, 2594, 2948, 3807, 3921, 5102
MmeI	TCCRAC	6 cut(s)	105, 710, 1205, 2314, 3044, 4885
Mox20I	TGGCCA	1 cut(s)	2177
Mph1103I	ATGCAT	2 cut(s)	1556, 5131
MroI	TCCGGA	2 cut(s)	66, 1250
MroXI	GAANNNNTTC	2 cut(s)	1884, 3890
MscI	TGGCCA	1 cut(s)	2177
MslI	CAYNNNNRTG	6 cut(s)	1209, 1446, 2226, 3589, 3821, 4214
Msp20I	TGGCCA	1 cut(s)	2177
MspA1I	CMGCKG	2 cut(s)	510, 1052
MspCI	CTTAAG	1 cut(s)	3881
MspI	CCGG	3 cut(s)	67, 1251, 3022
MspR9I	CCNGG	6 cut(s)	1366, 3022, 3906, 4299, 5370, 5384
MunI	CAATTG	5 cut(s)	2856, 3129, 3723, 4713, 4776
Mva1269I	GAATGC	1 cut(s)	2800
MvaI	CCWGG	5 cut(s)	1366, 3906, 4299, 5370, 5384
MvnI	CGCG	3 cut(s)	649, 778, 1001
NciI	CCSGG	1 cut(s)	3022
NcoI	CCATGG	1 cut(s)	641
NdeI	CATATG	3 cut(s)	883, 3590, 5047
NlaIV	GGNNCC	8 cut(s)	295, 1066, 1067, 2055, 3156, 4249, 4773, 5101
NmeAIII	GCCGAG	1 cut(s)	5048
NmuCI	GTSAC	5 cut(s)	953, 1448, 2491, 3367, 4186
NsiI	ATGCAT	2 cut(s)	1556, 5131
NspI	RCATGY	6 cut(s)	32, 1208, 2322, 3302, 4316, 4658
NspV	TTCGAA	2 cut(s)	1035, 2382
OliI	CACNNNNGTG	1 cut(s)	4214
PaeI	GCATGC	4 cut(s)	1208, 3302, 4316, 4658
PagI	TCATGA	2 cut(s)	309, 2608
PceI	AGGCCT	1 cut(s)	3980
PciI	ACATGT	2 cut(s)	28, 2318
PciSI	GCTCTTC	3 cut(s)	1662, 2692, 3948
PctI	GAATGC	1 cut(s)	2800
PdmI	GAANNNNTTC	2 cut(s)	1884, 3890
PflFI	GACNNNGTC	1 cut(s)	184
PfoI	TCCNGGA	2 cut(s)	3904, 4297
PleI	GAGTC	7 cut(s)	539, 1123, 2593, 2947, 3807, 3921, 5102
PpsI	GAGTC	7 cut(s)	539, 1123, 2593, 2947, 3807, 3921, 5102
Ppu21I	YACGTR	1 cut(s)	2981
PpuMI	RGGWCCY	3 cut(s)	362, 1065, 3155
PscI	ACATGT	2 cut(s)	28, 2318
PshAI	GACNNNNGTC	1 cut(s)	3695
PshBI	ATTAAT	1 cut(s)	2084
PsiI	TTATAA	4 cut(s)	554, 2024, 2661, 3851
Psp5II	RGGWCCY	3 cut(s)	362, 1065, 3155
Psp6I	CCWGG	5 cut(s)	1364, 3904, 4297, 5368, 5382
PspFI	CCCAGC	2 cut(s)	567, 4394
PspGI	CCWGG	5 cut(s)	1364, 3904, 4297, 5368, 5382
PspN4I	GGNNCC	8 cut(s)	295, 1066, 1067, 2055, 3156, 4249, 4773, 5101
PspPPI	RGGWCCY	3 cut(s)	362, 1065, 3155
PstI	CTGCAG	3 cut(s)	515, 2884, 3454
PstNI	CAGNNNCTG	3 cut(s)	262, 3291, 4184
PsuI	RGATCY	3 cut(s)	2053, 4729, 4771
PsyI	GACNNNGTC	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	510
RseI	CAYNNNNRTG	6 cut(s)	1209, 1446, 2226, 3589, 3821, 4214
SalI	GTCGAC	1 cut(s)	3688
SapI	GCTCTTC	3 cut(s)	1662, 2692, 3948
ScaI	AGTACT	1 cut(s)	487
SchI	GAGTC	7 cut(s)	539, 1124, 2594, 2948, 3807, 3921, 5102
ScrFI	CCNGG	6 cut(s)	1366, 3022, 3906, 4299, 5370, 5384
SduI	GDGCHC	4 cut(s)	1845, 2582, 4161, 4886
SfcI	CTRYAG	6 cut(s)	511, 2721, 2880, 3450, 3504, 4737
SfuI	TTCGAA	2 cut(s)	1035, 2382
SmiMI	CAYNNNNRTG	6 cut(s)	1209, 1446, 2226, 3589, 3821, 4214
SmlI	CTYRAG	8 cut(s)	2912, 2918, 3881, 4100, 4565, 4872, 4967, 5398
SmoI	CTYRAG	8 cut(s)	2912, 2918, 3881, 4100, 4565, 4872, 4967, 5398
SpeI	ACTAGT	1 cut(s)	2042
SphI	GCATGC	4 cut(s)	1208, 3302, 4316, 4658
SseBI	AGGCCT	1 cut(s)	3980
SspI	AATATT	5 cut(s)	1408, 1756, 1854, 4544, 5301
StuI	AGGCCT	1 cut(s)	3980
StyD4I	CCNGG	6 cut(s)	1364, 3020, 3904, 4297, 5368, 5382
StyI	CCWWGG	3 cut(s)	641, 4488, 5482
TaiI	ACGT	6 cut(s)	201, 391, 2983, 3520, 3752, 3952
TatI	WGTACW	4 cut(s)	485, 742, 1302, 5496
TauI	GCSGC	2 cut(s)	566, 5212
TseFI	GTSAC	5 cut(s)	953, 1448, 2491, 3367, 4186
Tsp45I	GTSAC	5 cut(s)	953, 1448, 2491, 3367, 4186
TspGWI	ACGGA	8 cut(s)	648, 659, 1795, 3550, 3729, 3939, 4457, 5482
Tth111I	GACNNNGTC	1 cut(s)	184
Vha464I	CTTAAG	1 cut(s)	3881
VneI	GTGCAC	1 cut(s)	4882
VspI	ATTAAT	1 cut(s)	2084
XagI	CCTNNNNNAGG	3 cut(s)	1328, 1725, 4202
XapI	RAATTY	5 cut(s)	212, 1258, 3095, 3179, 3871
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	6 cut(s)	32, 1208, 2322, 3302, 4316, 4658
XcmI	CCANNNNNNNNNTGG	3 cut(s)	2275, 3218, 5390
XmiI	GTMKAC	1 cut(s)	3689
XmnI	GAANNNNTTC	2 cut(s)	1884, 3890
ZrmI	AGTACT	1 cut(s)	487
Zsp2I	ATGCAT	2 cut(s)	1556, 5131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.