Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Forward (+)

17524962 .. 17530156

Gene Structure 5195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0198900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGAGCAGAAGCGTATGTTATTGGCTACTGGGAGTTGTGAGGGTGAAGGACCCTGTACTGTGAATATGATTGACAGATTTAGCAATCTTCCGGAGGGAGTTTTTCATCACATTCTTTCAAAATTTGGTATTAAAGACCTTACCCGATTCTGCTGTGTCTCCAAACGATGGAGAGAATTATGTCTGTCGTCTCCGTCGGTGGAATTTTGTGGATATAGTGAAGATGGAATTATGGATATGGCATGTGAGCTTAGGTTGAAGTTGGTGAATGCATTGGATAGGTTCTTGCTTAGTCGTGGGGATAATGAGATGAAGAGCTTTGTTCTTTTTTGGGATGGTCACAGTGATGAAGAGCTTGACGAAGCATGTTTCTGTGTTAATGAGAATTTCCGAATAATCACCTGGATCCAGAATGCTGTGAGGTGTAAAGTTGAAAAGGTTTATCTTGACGTCACCTTTTTTGATTATGAGGGGGAGCCATTGGCATTTCCATCTTGCGTCTTTCGTTCTGCATCATTGAGGTCTATAGTGGTTAACATGCCACGTACAGTTGTTAAAACACCCTCCTTCACTTTTTCCTCCAATATCGAAAAGTTGCATTTAAGTGATGTTGTTATACAGGACGAGGGGTTTTTCGAGTGGATTTCCTATTCCTGCAAATCCTTGAAGGATGTAACTCTTTCAGCAGTTCGTGAGATACATAGTATCACCATTGAAAGCTCGTCTTTGGAAAAATTTTATTTCATTAATTACGAGGTTGATGAAACCTGCCATATTAACATCTCTGGTGAGAAACTTGAAGAAATAAATGTCAGGTGCAATCATTCACCTAGCAGCACCATATTAAAAATTGTTGCTCCAAATGTTAAACGTTTGCTTTTGGAGGGGAATGTGAAAAATCACCTAAATCTGGGAGAATTGAAATGTTTGGAACAAGCTGCTATTCTTATGGAGCCTATAGTAGATGAGTTTAACAAAGTATTTGAGGTTCTTTCCAGTTTGTGCAGTGTTGAAGTTCTTGTTCTAAATGAAGCTACCATCCAGGCTGCATACAGGGAGGAATGCGTGCAAGCTCAATTAGATGAGATTTGGTATTTGCAAATGAATATTGGTAGCTTTACTGATGATCTAGTCCCGGCAGTTGTCTCTCTCTTAAGAGGAACACCAAATTTATGTACCTTATACATGTGTTATAAACCAACTTCACTTGACCCTAAATCTAATACGTCTGGGTTTGATATGGAGTATTGGAAGAAGCAAAACCTGGATTTTATTTCTCAGGTTCAGGACGTTACCATAGAGCTCAGTGCTGGGTTTAATGGAATTGAGTTAGCAAGGTATGTACTTGAGCATGCGGAGAGCCTGGAGAAAATGGTCATTAGGTATTTAACCCGTGAATCTAATGTTAGACGGAAGTTAAAAAATAGTAACATGATCTCCAATGCCGCAGTTACTTTTGAGAAATACGAAAGTTCAGTTAACCCATTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

497

Amino Acids

56.8

Weight (kDa)

5.03

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	27 - 65	1.5e-09	F-box domain
F-box-like	PF12937	27 - 63	3.1e-07	F-box-like
LRR_At5g56370	PF24758	134 - 256	7.1e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1194
AatII	GACGTC	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	776
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	2 cut(s)	1355, 1446
AclI	AACGTT	1 cut(s)	871
AclWI	GGATC	2 cut(s)	400, 413
AcsI	RAATTY	5 cut(s)	122, 203, 385, 734, 1168
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	4 cut(s)	58, 547, 1177, 1344
AfiI	CCNNNNNNNGG	2 cut(s)	168, 910
AflII	CTTAAG	1 cut(s)	1153
AflIII	ACRYGT	1 cut(s)	1185
AgsI	TTSAA	8 cut(s)	120, 259, 434, 667, 716, 800, 922, 1013
AjnI	CCWGG	4 cut(s)	401, 1041, 1263, 1362
AluBI	AGCT	9 cut(s)	250, 318, 355, 720, 938, 1034, 1073, 1116, 1303
AluI	AGCT	9 cut(s)	250, 318, 355, 720, 938, 1034, 1073, 1116, 1303
Alw21I	GWGCWC	1 cut(s)	1305
Alw26I	GTCTC	3 cut(s)	163, 195, 1150
AlwI	GGATC	2 cut(s)	400, 413
Aor13HI	TCCGGA	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	834, 938, 1046
ApoI	RAATTY	5 cut(s)	122, 203, 385, 734, 1168
AseI	ATTAAT	1 cut(s)	747
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	1136
AsuHPI	GGTGA	8 cut(s)	56, 277, 391, 445, 700, 800, 819, 893
AvaII	GGWCC	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	1305
Bbv12I	GWGCWC	1 cut(s)	1305
BbvI	GCAGC	3 cut(s)	846, 925, 1033
BccI	CCATC	5 cut(s)	162, 218, 329, 499, 1046
BciT130I	CCWGG	4 cut(s)	403, 1043, 1265, 1364
BcnI	CCSGG	1 cut(s)	1136
BcoDI	GTCTC	3 cut(s)	163, 195, 1150
BfaI	CTAG	2 cut(s)	831, 1130
BfmI	CTRYAG	2 cut(s)	525, 957
BfrI	CTTAAG	1 cut(s)	1153
BfuAI	ACCTGC	1 cut(s)	776
BisI	GCNGC	4 cut(s)	835, 939, 1047, 1446
BlsI	GCNGC	4 cut(s)	836, 940, 1048, 1447
Bme1390I	CCNGG	5 cut(s)	403, 1043, 1136, 1265, 1364
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	4 cut(s)	52, 407, 477, 954
BmrFI	CCNGG	5 cut(s)	403, 1043, 1136, 1265, 1364
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	521
BmuI	ACTGGG	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	1385
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	1367
BpuMI	CCSGG	1 cut(s)	1136
BsaAI	YACGTR	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	450
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	1421, 1451
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 910
Bse1I	ACTGG	2 cut(s)	34, 996
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	4 cut(s)	403, 1043, 1265, 1364
BseGI	GGATG	3 cut(s)	340, 676, 1038
BseLI	CCNNNNNNNGG	2 cut(s)	168, 910
BseMII	CTCAG	2 cut(s)	1292, 1318
BseNI	ACTGG	2 cut(s)	34, 996
BseXI	GCAGC	3 cut(s)	846, 925, 1033
BseYI	CCCAGC	1 cut(s)	1310
BsgI	GTGCAG	1 cut(s)	1024
BsiHKAI	GWGCWC	1 cut(s)	1305
BsiSI	CCGG	2 cut(s)	92, 1136
BslFI	GGGAC	1 cut(s)	1118
BslI	CCNNNNNNNGG	2 cut(s)	168, 910
BsmAI	GTCTC	3 cut(s)	163, 195, 1150
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	1118
BsmI	GAATGC	3 cut(s)	274, 418, 1067
Bsp1286I	GDGCHC	1 cut(s)	1305
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	405, 1126, 1434
BspACI	CCGC	2 cut(s)	1355, 1446
BspCNI	CTCAG	2 cut(s)	1291, 1317
BspEI	TCCGGA	1 cut(s)	91
BspLI	GGNNCC	4 cut(s)	52, 407, 477, 954
BspMI	ACCTGC	1 cut(s)	776
BspPI	GGATC	2 cut(s)	400, 413
BspQI	GCTCTTC	2 cut(s)	308, 345
BspTI	CTTAAG	1 cut(s)	1153
BsrI	ACTGG	2 cut(s)	34, 996
BssMI	GATC	3 cut(s)	405, 1126, 1434
BssNI	GRCGYC	1 cut(s)	450
Bst2UI	CCWGG	4 cut(s)	403, 1043, 1265, 1364
Bst4CI	ACNGT	3 cut(s)	61, 344, 550
Bst6I	CTCTTC	2 cut(s)	308, 345
BstACI	GRCGYC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	1153
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	1067, 1071, 1353
BstDEI	CTNAG	4 cut(s)	251, 290, 1278, 1304
BstF5I	GGATG	3 cut(s)	340, 676, 1038
BstKTI	GATC	3 cut(s)	408, 1129, 1437
BstMAI	GTCTC	3 cut(s)	163, 195, 1150
BstMBI	GATC	3 cut(s)	405, 1126, 1434
BstNI	CCWGG	4 cut(s)	403, 1043, 1265, 1364
BstNSI	RCATGY	5 cut(s)	246, 369, 541, 1189, 1355
BstSCI	CCNGG	5 cut(s)	401, 1041, 1134, 1263, 1362
BstSFI	CTRYAG	2 cut(s)	525, 957
BstV1I	GCAGC	3 cut(s)	846, 925, 1033
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	340, 676, 1038
BtsI	GCAGTG	1 cut(s)	1012
BtsIMutI	CAGTG	3 cut(s)	349, 1012, 1312
BveI	ACCTGC	1 cut(s)	776
Cac8I	GCNNGC	3 cut(s)	1067, 1071, 1353
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	4 cut(s)	57, 546, 1176, 1343
CviAII	CATG	6 cut(s)	243, 366, 538, 1186, 1352, 1432
CviQI	GTAC	4 cut(s)	57, 546, 1176, 1343
DdeI	CTNAG	4 cut(s)	251, 290, 1278, 1304
DpnI	GATC	3 cut(s)	407, 1128, 1436
DpnII	GATC	3 cut(s)	405, 1126, 1434
Eam1104I	CTCTTC	2 cut(s)	308, 345
EarI	CTCTTC	2 cut(s)	308, 345
Ecl136II	GAGCTC	1 cut(s)	1303
Eco24I	GRGCYC	1 cut(s)	1305
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	1303
EcoICRI	GAGCTC	1 cut(s)	1303
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	4 cut(s)	401, 1041, 1263, 1362
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	1305
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	6 cut(s)	246, 369, 541, 1189, 1355, 1435
FalI	AAGNNNNNCTT	2 cut(s)	709, 741
FaqI	GGGAC	1 cut(s)	1118
FatI	CATG	6 cut(s)	242, 365, 537, 1185, 1351, 1431
Fnu4HI	GCNGC	4 cut(s)	835, 939, 1047, 1446
FokI	GGATG	3 cut(s)	347, 683, 1025
FriOI	GRGCYC	1 cut(s)	1305
Fsp4HI	GCNGC	4 cut(s)	835, 939, 1047, 1446
FspBI	CTAG	2 cut(s)	831, 1130
GluI	GCNGC	4 cut(s)	835, 939, 1047, 1446
GsaI	CCCAGC	1 cut(s)	1314
GsuI	CTGGAG	1 cut(s)	1385
HapII	CCGG	2 cut(s)	92, 1136
HgaI	GACGC	1 cut(s)	487
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	6 cut(s)	246, 369, 541, 1189, 1355, 1435
HincII	GTYRAC	2 cut(s)	535, 1480
HindII	GTYRAC	2 cut(s)	535, 1480
HinfI	GANTC	2 cut(s)	147, 1397
HpaI	GTTAAC	2 cut(s)	535, 1480
HpaII	CCGG	2 cut(s)	92, 1136
HphI	GGTGA	8 cut(s)	56, 277, 391, 445, 700, 800, 819, 893
Hpy166II	GTNNAC	2 cut(s)	535, 1480
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	5 cut(s)	92, 409, 446, 692, 1286
Hpy8I	GTNNAC	2 cut(s)	535, 1480
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	41, 577, 661
HpyCH4III	ACNGT	3 cut(s)	61, 344, 550
HpyCH4IV	ACGT	5 cut(s)	450, 544, 871, 1226, 1290
HpyCH4V	TGCA	9 cut(s)	272, 512, 598, 657, 819, 1005, 1049, 1069, 1099
HpyF3I	CTNAG	4 cut(s)	251, 290, 1278, 1304
HpySE526I	ACGT	5 cut(s)	450, 544, 871, 1226, 1290
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	6 cut(s)	246, 369, 541, 1189, 1355, 1435
Kpn2I	TCCGGA	1 cut(s)	91
KspAI	GTTAAC	2 cut(s)	535, 1480
Kzo9I	GATC	3 cut(s)	405, 1126, 1434
LguI	GCTCTTC	2 cut(s)	308, 345
LmnI	GCTCC	4 cut(s)	4, 475, 862, 952
Lsp1109I	GCAGC	3 cut(s)	846, 925, 1033
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	2 cut(s)	831, 1130
MaeII	ACGT	5 cut(s)	450, 544, 871, 1226, 1290
MaeIII	GTNAC	6 cut(s)	338, 451, 673, 1291, 1427, 1450
MalI	GATC	3 cut(s)	407, 1128, 1436
MboI	GATC	3 cut(s)	405, 1126, 1434
MboII	GAAGA	6 cut(s)	80, 233, 325, 362, 812, 1264
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	1305
Mph1103I	ATGCAT	1 cut(s)	274
MroI	TCCGGA	1 cut(s)	91
MslI	CAYNNNNRTG	2 cut(s)	345, 603
MspCI	CTTAAG	1 cut(s)	1153
MspI	CCGG	2 cut(s)	92, 1136
MspR9I	CCNGG	5 cut(s)	403, 1043, 1136, 1265, 1364
Mva1269I	GAATGC	3 cut(s)	274, 418, 1067
MvaI	CCWGG	4 cut(s)	403, 1043, 1265, 1364
NciI	CCSGG	1 cut(s)	1136
NdeII	GATC	3 cut(s)	405, 1126, 1434
NlaIII	CATG	6 cut(s)	246, 369, 541, 1189, 1355, 1435
NlaIV	GGNNCC	4 cut(s)	52, 407, 477, 954
NmuCI	GTSAC	2 cut(s)	338, 451
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	5 cut(s)	246, 369, 541, 1189, 1355
PaeI	GCATGC	1 cut(s)	1355
PciI	ACATGT	1 cut(s)	1185
PciSI	GCTCTTC	2 cut(s)	308, 345
PctI	GAATGC	3 cut(s)	274, 418, 1067
PfeI	GAWTC	2 cut(s)	147, 1397
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	836, 940, 1048, 1447
Ppu21I	YACGTR	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	50
PscI	ACATGT	1 cut(s)	1185
PshBI	ATTAAT	1 cut(s)	747
PsiI	TTATAA	1 cut(s)	1194
Psp124BI	GAGCTC	1 cut(s)	1305
Psp1406I	AACGTT	1 cut(s)	871
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	4 cut(s)	401, 1041, 1263, 1362
PspFI	CCCAGC	1 cut(s)	1310
PspGI	CCWGG	4 cut(s)	401, 1041, 1263, 1362
PspN4I	GGNNCC	4 cut(s)	52, 407, 477, 954
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PsrI	GAACNNNNNNTAC	2 cut(s)	972, 1004
PsuI	RGATCY	1 cut(s)	405
RsaI	GTAC	4 cut(s)	58, 547, 1177, 1344
RsaNI	GTAC	4 cut(s)	57, 546, 1176, 1343
RseI	CAYNNNNRTG	2 cut(s)	345, 603
SacI	GAGCTC	1 cut(s)	1305
SapI	GCTCTTC	2 cut(s)	308, 345
SatI	GCNGC	4 cut(s)	835, 939, 1047, 1446
Sau3AI	GATC	3 cut(s)	405, 1126, 1434
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	5 cut(s)	403, 1043, 1136, 1265, 1364
SduI	GDGCHC	1 cut(s)	1305
SfaNI	GCATC	1 cut(s)	521
SfcI	CTRYAG	2 cut(s)	525, 957
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	345, 603
SmlI	CTYRAG	2 cut(s)	1153, 1346
SmoI	CTYRAG	2 cut(s)	1153, 1346
SphI	GCATGC	1 cut(s)	1355
SsiI	CCGC	2 cut(s)	1355, 1446
SspI	AATATT	1 cut(s)	1108
SspMI	CTAG	2 cut(s)	831, 1130
SstI	GAGCTC	1 cut(s)	1305
StyD4I	CCNGG	5 cut(s)	401, 1041, 1134, 1263, 1362
TaaI	ACNGT	3 cut(s)	61, 344, 550
TaiI	ACGT	5 cut(s)	453, 547, 874, 1229, 1293
TaqI	TCGA	2 cut(s)	588, 636
TatI	WGTACW	2 cut(s)	56, 1342
TauI	GCSGC	1 cut(s)	1448
TfiI	GAWTC	2 cut(s)	147, 1397
TscAI	CASTG	3 cut(s)	349, 1012, 1312
TseFI	GTSAC	2 cut(s)	338, 451
TseI	GCWGC	3 cut(s)	834, 938, 1046
Tsp45I	GTSAC	2 cut(s)	338, 451
TspDTI	ATGAA	7 cut(s)	95, 326, 363, 733, 777, 1044, 1118
TspGWI	ACGGA	2 cut(s)	183, 1426
TspRI	CASTG	3 cut(s)	349, 1012, 1312
Van91I	CCANNNNNTGG	1 cut(s)	168
Vha464I	CTTAAG	1 cut(s)	1153
VpaK11BI	GGWCC	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	5 cut(s)	122, 203, 385, 734, 1168
XceI	RCATGY	5 cut(s)	246, 369, 541, 1189, 1355
XspI	CTAG	2 cut(s)	831, 1130
ZraI	GACGTC	1 cut(s)	451
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.