Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021223.1

Orthogroup ID

OG0005424

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6817

Gene Structure 6817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021223.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

atggggaccggaacgagacagctgaaggctatgcttcgcaagaattggcttctcaaaattcgtcaccctttcgtcacctgcgctgagatattactccccactgtagtaatgttgatgctcatagctgtaaggacacgtgttgatacacagattcacccttcacagccatatatccggaaagggatgttggtggaagtgggcaaaggaatatcccctaattttgagcaagtgttggaattactattgaagaaggaagagattttggcttttgcaccagacacagaagagacaaggtcaatgatcaacgtgatgtcgatgaaatttcctctcttgaagcttgtttctagagtttacaaagatgagcaggagctggaaacctatatacgctcaaatctctatggtacctgcaatcaaatcatgaattgctcgaacccaaaaatcaaaggagcagtagtatttcacgatcaaggtcctcaacttttcgattatagcatacgacttaatcacacatgggctttctcgggatttcctgatgttaaatcgatcatggacacaaatggcccttacttaaatgacttggaactgggcgtgaatactgtaccgacaatgcaatacagctgcagtggatttttaactctccagcaagcactagactcttttataatttttgcggcccagcaatcggataccagaaacatagaacttcctacttcgctgtcctctagcacaccttcctctctcaaagttccatggacgcgatatggtccgtcaaacatccgtatagtcccgtttccgactcgtgaatacactgatgatgagttccagtccatcataaaaagtgtcatgggtgtactgtatcttttgggatttctctatccaatttcgcgcttgatcagctattctgtgtttgagaaggaacaaaagataagagaaggtctttatatgatggggctgaaagatggggtattccatctatcgtggttcattgcatatgctttgcagttcgcagtttcttctcttattattacagtttgcacgatggatagccttttcaagtatagtgacaagtcagtggtgttcatttacttcttctttttcggaataagcgcgattatgctgtcatttttaatctctacattcttcgaacgagcgaagacagcggttgcggttgggacccttgctttcttgggtgcttttttcccatactactctgtcaatgacgaggctgttcctatgattctaaaggtcattgcctctctgctttcacctacggcttttgctctggggtcaatcaactttgctgattatgagcgtgctcatgttggccttcgttggagcaatatctggcgggcatcatccggagtgaatttttcagtctgtcttttgatgatgttgctcgatgcgttgctgtactgtgtaattggtctttacctagataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

480

Amino Acids

54.37

Weight (kDa)

8.31

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41700 AT2G41700
fragaria_vesca	FvH4_6g24100 FvH4_6g24100
malus_domestica	MD12G1079400.v1.1 MD14G1075700.v1.1
prunus_persica	Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1 Prupe.7G058100_v2.0.a1
pyrus_communis	pycom12g06660
rosa_chinensis	RchiOBHm_Chr3g0482761
rosa_laevigata	RLG00000023331
rosa_multiflora	Rmu_co8213162.1_g000001 Rmu_sc0001542.1_g000002 Rmu_sc0021223.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398990
rosa_rugosa	Rorug03G0198800 Rorug03G0198900
rosa_samantha	Rh3AG249700 Rh3BG285700 Rh3CG283300 Rh3DG279300
rosa_wichuraiana	Rw3G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	2 cut(s)	86, 413
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AccII	CGCG	3 cut(s)	757, 886, 1109
AccIII	TCCGGA	2 cut(s)	174, 1358
AciI	CCGC	4 cut(s)	671, 1160, 1166, 1348
AcsI	RAATTY	3 cut(s)	57, 320, 1366
AcuI	CTGAAG	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	137
AfaI	GTAC	4 cut(s)	403, 600, 852, 1412
AfiI	CCNNNNNNNGG	1 cut(s)	682
AflIII	ACRYGT	2 cut(s)	134, 136
AgsI	TTSAA	3 cut(s)	247, 334, 1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	22, 125, 337, 370, 618, 897
AluI	AGCT	6 cut(s)	22, 125, 337, 370, 618, 897
Alw21I	GWGCWC	1 cut(s)	1318
Alw26I	GTCTC	2 cut(s)	10, 281
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	520
Aor13HI	TCCGGA	2 cut(s)	174, 1358
AoxI	GGCC	3 cut(s)	559, 672, 1324
ApeKI	GCWGC	1 cut(s)	618
ApoI	RAATTY	3 cut(s)	57, 320, 1366
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	3 cut(s)	83, 888, 1109
AspS9I	GGNCC	6 cut(s)	6, 470, 560, 673, 764, 1173
AsuHPI	GGTGA	4 cut(s)	56, 67, 146, 1257
AsuII	TTCGAA	1 cut(s)	1143
AvaI	CYCGRG	1 cut(s)	520
AvaII	GGWCC	4 cut(s)	6, 470, 764, 1173
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	798
BbrPI	CACGTG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	1160
Bbv12I	GWGCWC	1 cut(s)	1318
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	5 cut(s)	836, 940, 953, 978, 1033
BceAI	ACGGC	1 cut(s)	1287
BciVI	GTATCC	1 cut(s)	679
BclI	TGATCA	2 cut(s)	300, 891
BcoDI	GTCTC	2 cut(s)	10, 281
BfaI	CTAG	4 cut(s)	345, 650, 723, 1433
BfmI	CTRYAG	2 cut(s)	102, 619
BfuAI	ACCTGC	2 cut(s)	86, 413
BfuI	GTATCC	1 cut(s)	679
BisI	GCNGC	2 cut(s)	619, 672
BlsI	GCNGC	2 cut(s)	620, 673
Bme18I	GGWCC	4 cut(s)	6, 470, 764, 1173
BmeT110I	CYCGRG	1 cut(s)	520
BmgT120I	GGNCC	6 cut(s)	6, 470, 560, 673, 764, 1173
BmiI	GGNNCC	4 cut(s)	7, 403, 1174, 1175
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	3 cut(s)	105, 1361, 1390
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	1160
BpmI	CTGGAG	1 cut(s)	623
Bpu14I	TTCGAA	1 cut(s)	1143
Bsa29I	ATCGAT	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	749
BsaWI	WCCGGW	3 cut(s)	8, 174, 1358
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse1I	ACTGG	2 cut(s)	588, 823
Bse3DI	GCAATG	2 cut(s)	984, 1248
BseAI	TCCGGA	2 cut(s)	174, 1358
BseCI	ATCGAT	1 cut(s)	542
BseDI	CCNNGG	1 cut(s)	749
BseGI	GGATG	3 cut(s)	189, 774, 1355
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMI	GCAATG	2 cut(s)	984, 1248
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	588, 823
BseXI	GCAGC	1 cut(s)	605
BseYI	CCCAGC	1 cut(s)	675
Bsh1236I	CGCG	3 cut(s)	757, 886, 1109
BshFI	GGCC	3 cut(s)	561, 674, 1326
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	1318
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	3 cut(s)	9, 175, 1359
BslFI	GGGAC	3 cut(s)	19, 770, 1186
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	2 cut(s)	10, 281
BsmFI	GGGAC	3 cut(s)	19, 770, 1186
BsnI	GGCC	3 cut(s)	561, 674, 1326
BsoBI	CYCGRG	1 cut(s)	520
Bsp119I	TTCGAA	1 cut(s)	1143
Bsp1286I	GDGCHC	1 cut(s)	1318
Bsp13I	TCCGGA	2 cut(s)	174, 1358
Bsp143I	GATC	4 cut(s)	300, 463, 543, 891
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	4 cut(s)	671, 1160, 1166, 1348
BspANI	GGCC	3 cut(s)	561, 674, 1326
BspCNI	CTCAG	1 cut(s)	76
BspDI	ATCGAT	1 cut(s)	542
BspEI	TCCGGA	2 cut(s)	174, 1358
BspFNI	CGCG	3 cut(s)	757, 886, 1109
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	4 cut(s)	7, 403, 1174, 1175
BspMAI	CTGCAG	1 cut(s)	623
BspMI	ACCTGC	2 cut(s)	86, 413
BspT104I	TTCGAA	1 cut(s)	1143
BspT107I	GGYRCC	1 cut(s)	401
BsrDI	GCAATG	2 cut(s)	984, 1248
BsrI	ACTGG	2 cut(s)	588, 823
BssECI	CCNNGG	1 cut(s)	749
BssMI	GATC	4 cut(s)	300, 463, 543, 891
BssSI	CACGAG	1 cut(s)	798
BssT1I	CCWWGG	1 cut(s)	749
Bst2BI	CACGAG	1 cut(s)	798
Bst4CI	ACNGT	5 cut(s)	103, 598, 855, 1030, 1415
Bst6I	CTCTTC	2 cut(s)	249, 279
BstBAI	YACGTR	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	1143
BstC8I	GCNNGC	3 cut(s)	645, 1314, 1350
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	749
BstF5I	GGATG	3 cut(s)	189, 774, 1355
BstFNI	CGCG	3 cut(s)	757, 886, 1109
BstHHI	GCGC	3 cut(s)	83, 888, 1109
BstKTI	GATC	4 cut(s)	303, 466, 546, 894
BstMAI	GTCTC	2 cut(s)	10, 281
BstMBI	GATC	4 cut(s)	300, 463, 543, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	894, 1157
BstSFI	CTRYAG	2 cut(s)	102, 619
BstUI	CGCG	3 cut(s)	757, 886, 1109
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	1 cut(s)	1160
Bsu15I	ATCGAT	1 cut(s)	542
BsuI	GTATCC	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	561, 674, 1326
BsuTUI	ATCGAT	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	749
BtsCI	GGATG	3 cut(s)	189, 774, 1355
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	4 cut(s)	99, 628, 807, 1077
BveI	ACCTGC	2 cut(s)	86, 413
Cac8I	GCNNGC	3 cut(s)	645, 1314, 1350
CaiI	CAGNNNCTG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	3 cut(s)	83, 888, 1109
Cfr13I	GGNCC	6 cut(s)	6, 470, 560, 673, 764, 1173
ClaI	ATCGAT	1 cut(s)	542
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	4 cut(s)	402, 599, 851, 1411
CviAII	CATG	6 cut(s)	418, 510, 547, 750, 844, 1319
CviQI	GTAC	4 cut(s)	402, 599, 851, 1411
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	4 cut(s)	302, 465, 545, 893
DpnII	GATC	4 cut(s)	300, 463, 543, 891
Eam1104I	CTCTTC	2 cut(s)	249, 279
EarI	CTCTTC	2 cut(s)	249, 279
Eco130I	CCWWGG	1 cut(s)	749
Eco47I	GGWCC	4 cut(s)	6, 470, 764, 1173
Eco57I	CTGAAG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	520
EcoO109I	RGGNCCY	2 cut(s)	470, 1173
EcoT14I	CCWWGG	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	6 cut(s)	421, 513, 550, 753, 847, 1322
FaqI	GGGAC	3 cut(s)	19, 770, 1186
FatI	CATG	6 cut(s)	417, 509, 546, 749, 843, 1318
FauI	CCCGC	1 cut(s)	1341
FauNDI	CATATG	1 cut(s)	991
FbaI	TGATCA	2 cut(s)	300, 891
Fnu4HI	GCNGC	2 cut(s)	619, 672
FokI	GGATG	3 cut(s)	196, 761, 1342
Fsp4HI	GCNGC	2 cut(s)	619, 672
FspBI	CTAG	4 cut(s)	345, 650, 723, 1433
GlaI	GCGC	3 cut(s)	82, 887, 1108
GluI	GCNGC	2 cut(s)	619, 672
GsaI	CCCAGC	1 cut(s)	679
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	3 cut(s)	561, 674, 1326
HapII	CCGG	3 cut(s)	9, 175, 1359
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	3 cut(s)	83, 888, 1109
Hin1II	CATG	6 cut(s)	421, 513, 550, 753, 847, 1322
Hin6I	GCGC	3 cut(s)	81, 886, 1107
HinP1I	GCGC	3 cut(s)	81, 886, 1107
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	4 cut(s)	151, 653, 796, 1237
HpaII	CCGG	3 cut(s)	9, 175, 1359
HphI	GGTGA	4 cut(s)	56, 67, 146, 1257
Hpy166II	GTNNAC	2 cut(s)	352, 851
Hpy188I	TCNGA	3 cut(s)	685, 795, 1100
Hpy188III	TCNNGA	9 cut(s)	175, 331, 345, 418, 461, 522, 530, 800, 1359
Hpy8I	GTNNAC	2 cut(s)	352, 851
HpyAV	CCTTC	7 cut(s)	19, 168, 244, 741, 907, 926, 1337
HpyCH4III	ACNGT	5 cut(s)	103, 598, 855, 1030, 1415
HpyCH4IV	ACGT	2 cut(s)	136, 306
HpyCH4V	TGCA	7 cut(s)	272, 408, 610, 621, 989, 1000, 1035
HpyF10VI	GCNNNNNNNGC	2 cut(s)	894, 1157
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	2 cut(s)	136, 306
Hsp92II	CATG	6 cut(s)	421, 513, 550, 753, 847, 1322
HspAI	GCGC	3 cut(s)	81, 886, 1107
KflI	GGGWCCC	1 cut(s)	1173
Kpn2I	TCCGGA	2 cut(s)	174, 1358
KpnI	GGTACC	1 cut(s)	405
Ksp22I	TGATCA	2 cut(s)	300, 891
Kzo9I	GATC	4 cut(s)	300, 463, 543, 891
LmnI	GCTCC	3 cut(s)	367, 446, 1335
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	3 cut(s)	105, 1361, 1390
MaeI	CTAG	4 cut(s)	345, 650, 723, 1433
MaeII	ACGT	2 cut(s)	136, 306
MaeIII	GTNAC	3 cut(s)	62, 73, 1061
MalI	GATC	4 cut(s)	302, 465, 545, 893
MboI	GATC	4 cut(s)	300, 463, 543, 891
MboII	GAAGA	7 cut(s)	259, 266, 296, 1005, 1081, 1132, 1165
MhlI	GDGCHC	1 cut(s)	1318
MlyI	GAGTC	2 cut(s)	647, 790
MmeI	TCCRAC	3 cut(s)	213, 818, 1313
MnlI	CCTC	6 cut(s)	336, 483, 730, 745, 1216, 1264
MroI	TCCGGA	2 cut(s)	174, 1358
MseI	TTAA	5 cut(s)	501, 537, 569, 632, 1127
MspA1I	CMGCKG	3 cut(s)	22, 618, 1160
MspI	CCGG	3 cut(s)	9, 175, 1359
MvnI	CGCG	3 cut(s)	757, 886, 1109
MwoI	GCNNNNNNNGC	2 cut(s)	894, 1157
NcoI	CCATGG	1 cut(s)	749
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	4 cut(s)	300, 463, 543, 891
NlaIII	CATG	6 cut(s)	421, 513, 550, 753, 847, 1322
NlaIV	GGNNCC	4 cut(s)	7, 403, 1174, 1175
NmuCI	GTSAC	3 cut(s)	62, 73, 1061
NspV	TTCGAA	1 cut(s)	1143
PagI	TCATGA	1 cut(s)	417
PaqCI	CACCTGC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	151, 1237
PflFI	GACNNNGTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	620, 673
PleI	GAGTC	2 cut(s)	647, 790
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
PpsI	GAGTC	2 cut(s)	647, 790
Ppu21I	YACGTR	1 cut(s)	137
PpuMI	RGGWCCY	2 cut(s)	470, 1173
PsiI	TTATAA	1 cut(s)	662
Psp5II	RGGWCCY	2 cut(s)	470, 1173
PspCI	CACGTG	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	675
PspN4I	GGNNCC	4 cut(s)	7, 403, 1174, 1175
PspPI	GGNCC	6 cut(s)	6, 470, 560, 673, 764, 1173
PspPPI	RGGWCCY	2 cut(s)	470, 1173
PstI	CTGCAG	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	292
PvuII	CAGCTG	2 cut(s)	22, 618
RsaI	GTAC	4 cut(s)	403, 600, 852, 1412
RsaNI	GTAC	4 cut(s)	402, 599, 851, 1411
SaqAI	TTAA	5 cut(s)	501, 537, 569, 632, 1127
SatI	GCNGC	2 cut(s)	619, 672
Sau3AI	GATC	4 cut(s)	300, 463, 543, 891
Sau96I	GGNCC	6 cut(s)	6, 470, 560, 673, 764, 1173
SchI	GAGTC	2 cut(s)	647, 790
SduI	GDGCHC	1 cut(s)	1318
SfaNI	GCATC	3 cut(s)	105, 1361, 1390
SfcI	CTRYAG	2 cut(s)	102, 619
SfuI	TTCGAA	1 cut(s)	1143
SinI	GGWCC	4 cut(s)	6, 470, 764, 1173
SsiI	CCGC	4 cut(s)	671, 1160, 1166, 1348
SspMI	CTAG	4 cut(s)	345, 650, 723, 1433
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	5 cut(s)	103, 598, 855, 1030, 1415
TaiI	ACGT	2 cut(s)	139, 309
TaqI	TCGA	6 cut(s)	314, 428, 483, 542, 1143, 1398
TatI	WGTACW	2 cut(s)	850, 1410
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	2 cut(s)	151, 1237
Tru1I	TTAA	5 cut(s)	501, 537, 569, 632, 1127
Tru9I	TTAA	5 cut(s)	501, 537, 569, 632, 1127
TscAI	CASTG	4 cut(s)	106, 628, 814, 1077
TseFI	GTSAC	3 cut(s)	62, 73, 1061
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	3 cut(s)	62, 73, 1061
TspDTI	ATGAA	4 cut(s)	332, 434, 973, 1069
TspGWI	ACGGA	2 cut(s)	756, 767
TspRI	CASTG	4 cut(s)	106, 628, 814, 1077
Tth111I	GACNNNGTC	1 cut(s)	292
VpaK11BI	GGWCC	4 cut(s)	6, 470, 764, 1173
XapI	RAATTY	3 cut(s)	57, 320, 1366
XbaI	TCTAGA	1 cut(s)	344
XspI	CTAG	4 cut(s)	345, 650, 723, 1433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.