Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003405

Physical Location & Seq

Genomic Coordinates Forward (+)

31531438 .. 31532140

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1235700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTTGAGGCGGCTGAGCACCAGGTGGAGTTCGTTGGTGGAGATGAGGCCGTTGCGGTCGGCCTTGAGGACGTTGCCGAGCTCGTTGACGGAGATCTTGCCATCGCCGTTGGCGTCGAAGCTTTTGAAGACCTTCTGGACCTCGTCGGTGACGACGGGCTTGGGACCGGTGGAGGTTGGGGCTCCGTTGGTTGCCATGGTTGCTGGAATTTCTGGCTTTTTGGTAGTTGTGTGTTCTCAGAGCTTTCAGAATTCAAGAGAGGAAGGAGGAAGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

9.88

Weight (kDa)

10.71

Isoelectric Point (pI)

71.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67290 AT5G19580
fragaria_vesca	FvH4_1g05670 FvH4_2g35740
malus_domestica	MD02G1057700.v1.1 MD14G1235700.v1.1 MD15G1094900.v1.1 MD15G1095000.v1.1 MD15G1192100.v1.1
prunus_persica	Prupe.1G450000_v2.0.a1 Prupe.7G225100_v2.0.a1
pyrus_communis	pycom15g08750 pycom15g17200
rosa_chinensis	RchiOBHm_Chr2g0091311 RchiOBHm_Chr6g0306041
rosa_laevigata	RLG00000010829 RLG00000016210 RLG00000032216
rosa_multiflora	Rmu_sc0002270.1_g000045 Rmu_sc0025077.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150220 Rroxscaffold_7G00162100
rosa_rugosa	Rorug02G0016200 Rorug06G0346600
rosa_samantha	Rh2AG061300 Rh2BG060400 Rh2CG062300 Rh2DG060900 Rh2DG061000 Rh6AG458600 Rh6BG442300 Rh6CG473000 Rh6DG459200 Rh7BG304600
rosa_wichuraiana	Rw2G004860 Rw6G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	10, 55
AcsI	RAATTY	2 cut(s)	207, 250
AcyI	GRCGYC	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	24
AgeI	ACCGGT	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	127, 255
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	81, 121, 243
AluI	AGCT	3 cut(s)	81, 121, 243
Alw21I	GWGCWC	2 cut(s)	20, 83
AoxI	GGCC	2 cut(s)	47, 60
ApoI	RAATTY	2 cut(s)	207, 250
AsiGI	ACCGGT	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	138, 164
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	138, 164
BanII	GRGCYC	2 cut(s)	83, 184
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	2 cut(s)	20, 83
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	2 cut(s)	34, 91
BciT130I	CCWGG	1 cut(s)	22
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	2 cut(s)	138, 164
BmgT120I	GGNCC	2 cut(s)	138, 164
BmiI	GGNNCC	2 cut(s)	165, 183
BmrFI	CCNGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	5, 251
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	49, 62
BshTI	ACCGGT	1 cut(s)	166
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	2 cut(s)	20, 83
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	49, 62
Bsp1286I	GDGCHC	3 cut(s)	20, 83, 184
Bsp143I	GATC	1 cut(s)	93
Bsp1720I	GCTNAGC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	2 cut(s)	10, 55
BspANI	GGCC	2 cut(s)	49, 62
BspCNI	CTCAG	2 cut(s)	6, 250
BspLI	GGNNCC	2 cut(s)	165, 183
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	14, 237
BstDSI	CCRYGG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	49, 62
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	138, 164
CseI	GACGC	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	20
CspAI	ACCGGT	1 cut(s)	166
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	9 cut(s)	13, 49, 62, 81, 121, 159, 182, 216, 243
CviKI_1	RGCY	9 cut(s)	13, 49, 62, 81, 121, 159, 182, 216, 243
DdeI	CTNAG	2 cut(s)	14, 237
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DraIII	CACNNNGTG	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	2 cut(s)	83, 184
Eco47I	GGWCC	2 cut(s)	138, 164
Eco53kI	GAGCTC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	2 cut(s)	83, 184
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	197, 275
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	2 cut(s)	83, 184
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	49, 62
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	119
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	240, 249
Hpy188III	TCNNGA	2 cut(s)	136, 255
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	3 cut(s)	118, 148, 157
HpyAV	CCTTC	2 cut(s)	142, 257
HpyCH4IV	ACGT	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	14, 237
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	7, 34, 121, 180, 189, 198
MabI	ACCWGGT	1 cut(s)	20
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	3 cut(s)	20, 83, 184
MluCI	AATT	2 cut(s)	207, 250
MnlI	CCTC	6 cut(s)	39, 60, 151, 166, 253, 260
MroXI	GAANNNNTTC	1 cut(s)	131
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	165, 183
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 149
PdmI	GAANNNNTTC	1 cut(s)	131
PflFI	GACNNNGTC	1 cut(s)	142
PinAI	ACCGGT	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	165, 183
PspPI	GGNCC	2 cut(s)	138, 164
PsuI	RGATCY	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	138, 164
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	3 cut(s)	20, 83, 184
SetI	ASST	8 cut(s)	26, 74, 83, 123, 134, 143, 177, 245
SexAI	ACCWGGT	1 cut(s)	20
SinI	GGWCC	2 cut(s)	138, 164
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	207, 250
SsiI	CCGC	2 cut(s)	10, 55
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	207, 250
TauI	GCSGC	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspGWI	ACGGA	2 cut(s)	104, 174
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	138, 164
XapI	RAATTY	2 cut(s)	207, 250
XmnI	GAANNNNTTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.