Rh6DG459200

galactose

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003405
Physical Location & Seq
Forward (+)
62913185 .. 62913799
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG459200.1

Sequence Viewer

Length: 507 bp
ATGTCCATCTTGCTCAAATCCCTTGCTCCTCTCTCCCTCTTCTTCTTCTTCTTCTTTACTTTTGGGAATTCTAGGCTTCCAAAAATCCCGCTTATACTTTTTTTCAATGGAGGAGAATATGAATATTACAAAGCCGTACACAATCCAAATGAAGCGATCAAACATGAGAAAGAGTATAGAGGTAGGTGGGAATTGGTTTCAGAGAATTCAGGTGTATCAGCCATGCACATAATCATAATGCCTAACAGTAATAAGGCCATTATGTTTGATGCTGCTGGTTTTGGCCCATCTGAGATCTCATTGCCCGCCGGAGATTGTCGTCGGGTTTTGGACAGCAGACAGGAAGTTGAAGTTTATGAATTGGATTGCTGGGCTCATGCTGTGGAATTTGACATTGACACTGCAGCTATTAGGCCACTTAAGATACTTGGTGCTCATCTGGGGGGTTATCAGCTAATGGTACACTTGTGCAAACTGGTGGATGGGATGAAGGAGGAAGGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

168

Amino Acids

18.97

Weight (kDa)

5.66

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 75 - 143 1.4e-14 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 89, 306
AcsI RAATTY 3 cut(s) 67, 205, 386
AfaI GTAC 2 cut(s) 138, 462
AflII CTTAAG 1 cut(s) 419
AgsI TTSAA 2 cut(s) 106, 350
AluBI AGCT 2 cut(s) 407, 454
AluI AGCT 2 cut(s) 407, 454
Alw21I GWGCWC 1 cut(s) 436
AoxI GGCC 3 cut(s) 255, 283, 413
ApeKI GCWGC 2 cut(s) 272, 404
ApoI RAATTY 3 cut(s) 67, 205, 386
AspS9I GGNCC 1 cut(s) 284
BaeI ACNNNNGTAYC 2 cut(s) 452, 485
BanII GRGCYC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 259, 416
BccI CCATC 3 cut(s) 14, 295, 476
BceAI ACGGC 1 cut(s) 119
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 419
BglII AGATCT 1 cut(s) 294
BisI GCNGC 2 cut(s) 273, 405
BlsI GCNGC 2 cut(s) 274, 406
BmgT120I GGNCC 1 cut(s) 284
BmsI GCATC 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 480
Bse3DI GCAATG 1 cut(s) 299
BseGI GGATG 2 cut(s) 487, 492
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 2 cut(s) 18, 126
BseXI GCAGC 2 cut(s) 259, 416
BseYI CCCAGC 1 cut(s) 369
BshFI GGCC 3 cut(s) 257, 285, 415
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 309
BsnI GGCC 3 cut(s) 257, 285, 415
Bsp1286I GDGCHC 2 cut(s) 376, 436
Bsp143I GATC 2 cut(s) 156, 294
BspACI CCGC 2 cut(s) 89, 306
BspANI GGCC 3 cut(s) 257, 285, 415
BspCNI CTCAG 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 406
BspTI CTTAAG 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 480
BssMI GATC 2 cut(s) 156, 294
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 487, 492
BstKTI GATC 2 cut(s) 159, 297
BstMBI GATC 2 cut(s) 156, 294
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 259, 416
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 3 cut(s) 257, 285, 415
BtsCI GGATG 2 cut(s) 487, 492
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 137, 461
CviAII CATG 3 cut(s) 164, 223, 377
CviJI RGCY 9 cut(s) 76, 134, 221, 257, 285, 374, 407, 415, 454
CviKI_1 RGCY 9 cut(s) 76, 134, 221, 257, 285, 374, 407, 415, 454
CviQI GTAC 2 cut(s) 137, 461
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 158, 296
DpnII GATC 2 cut(s) 156, 294
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 376
EcoRI GAATTC 2 cut(s) 67, 205
EcoT38I GRGCYC 1 cut(s) 376
FaeI CATG 3 cut(s) 167, 226, 380
FatI CATG 3 cut(s) 163, 222, 376
FauI CCCGC 2 cut(s) 96, 313
Fnu4HI GCNGC 2 cut(s) 273, 405
FokI GGATG 2 cut(s) 494, 499
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 2 cut(s) 273, 405
FspBI CTAG 1 cut(s) 72
GluI GCNGC 2 cut(s) 273, 405
GsaI CCCAGC 1 cut(s) 373
HaeIII GGCC 3 cut(s) 257, 285, 415
HapII CCGG 1 cut(s) 309
Hin1II CATG 3 cut(s) 167, 226, 380
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 2 cut(s) 139, 463
Hpy188I TCNGA 2 cut(s) 202, 292
Hpy8I GTNNAC 2 cut(s) 139, 463
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 484, 491
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 3 cut(s) 226, 404, 471
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 3 cut(s) 167, 226, 380
Kzo9I GATC 2 cut(s) 156, 294
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 195, 261, 322, 326, 355, 425, 461
Lsp1109I GCAGC 2 cut(s) 259, 416
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 72
MalI GATC 2 cut(s) 158, 296
MboI GATC 2 cut(s) 156, 294
MboII GAAGA 5 cut(s) 31, 34, 37, 40, 43
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 2 cut(s) 376, 436
MluCI AATT 5 cut(s) 67, 191, 205, 359, 386
MnlI CCTC 5 cut(s) 39, 47, 104, 173, 487
MseI TTAA 1 cut(s) 420
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 309
NdeII GATC 2 cut(s) 156, 294
NlaIII CATG 3 cut(s) 167, 226, 380
PkrI GCNGC 2 cut(s) 274, 406
PspFI CCCAGC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 2 cut(s) 138, 462
RsaNI GTAC 2 cut(s) 137, 461
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 273, 405
Sau3AI GATC 2 cut(s) 156, 294
Sau96I GGNCC 1 cut(s) 284
SduI GDGCHC 2 cut(s) 376, 436
SetI ASST 6 cut(s) 184, 188, 214, 409, 456, 502
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 5 cut(s) 67, 191, 205, 359, 386
SsiI CCGC 2 cut(s) 89, 306
SspI AATATT 1 cut(s) 125
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 248
TasI AATT 5 cut(s) 67, 191, 205, 359, 386
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 1 cut(s) 406
TseI GCWGC 2 cut(s) 272, 404
TspDTI ATGAA 4 cut(s) 135, 165, 372, 503
TspRI CASTG 1 cut(s) 406
Vha464I CTTAAG 1 cut(s) 419
XapI RAATTY 3 cut(s) 67, 205, 386
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.