Rh2DG061000

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003405
Physical Location & Seq
Forward (+)
4493737 .. 4494093
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG061000.1

Sequence Viewer

Length: 357 bp
ATGGATAAGGCTTTGGACATCCACAGGCCGGAAATCAACGCCCAGGCCTCCGACAACAAGCTTAAGTACGGATCACCGTTCGGGGTCCAGTTCAAGCTGAACGAGCAAGACAAGCCTACAAAGGCTGACATCAAGGTCACCGTGTACGCTGTTCCTTTCACAACACATGGCTACTCCATGAACCAGAGGCTTGTTGTTTTGGCGAACACTGAGCTCAAGGCAGAGGGAGCTGGCTTATATAGTGTCACGGCGTTGGCCCCACCAACCGGAGCGGTTGCGCCACCAGGGTCCTACCTGCTGAATGTGGTTCACCGCGGAGTGCCGAGCACGGGAATGTGGGTGACGATTAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

118

Amino Acids

12.74

Weight (kDa)

8.93

Isoelectric Point (pI)

22.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GO-like_E_set PF09118 9 - 116 1.7e-27 Galactose oxidase-like, Early set domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 303
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 1 cut(s) 315
AciI CCGC 3 cut(s) 272, 313, 315
AclWI GGATC 1 cut(s) 79
AfaI GTAC 2 cut(s) 68, 146
AfiI CCNNNNNNNGG 3 cut(s) 28, 266, 329
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 2 cut(s) 42, 283
AluBI AGCT 4 cut(s) 61, 97, 214, 230
AluI AGCT 4 cut(s) 61, 97, 214, 230
Alw21I GWGCWC 2 cut(s) 216, 329
AlwI GGATC 1 cut(s) 79
AoxI GGCC 3 cut(s) 26, 45, 255
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 3 cut(s) 85, 256, 288
AsuHPI GGTGA 4 cut(s) 66, 130, 302, 352
AvaII GGWCC 2 cut(s) 85, 288
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 216, 329
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 44, 285
BfrI CTTAAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 44, 285
Bme18I GGWCC 2 cut(s) 85, 288
BmgT120I GGNCC 3 cut(s) 85, 256, 288
BmiI GGNNCC 3 cut(s) 86, 258, 289
BmrFI CCNGG 2 cut(s) 44, 285
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 42, 284, 313
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 266, 329
Bse1I ACTGG 2 cut(s) 88, 352
BseBI CCWGG 2 cut(s) 44, 285
BseDI CCNNGG 3 cut(s) 42, 284, 313
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 28, 266, 329
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 88, 352
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 28, 47, 257
BsiHKAI GWGCWC 2 cut(s) 216, 329
BsiSI CCGG 2 cut(s) 29, 267
BslI CCNNNNNNNGG 3 cut(s) 28, 266, 329
BsnI GGCC 3 cut(s) 28, 47, 257
Bsp1286I GDGCHC 2 cut(s) 216, 329
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 3 cut(s) 272, 313, 315
BspANI GGCC 3 cut(s) 28, 47, 257
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 86, 258, 289
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 79
BspTI CTTAAG 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 272
BsrI ACTGG 2 cut(s) 88, 352
BssECI CCNNGG 3 cut(s) 42, 284, 313
BssMI GATC 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 44, 285
Bst4CI ACNGT 2 cut(s) 78, 142
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 313
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 103, 112, 227
BstNI CCWGG 2 cut(s) 44, 285
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 42, 283
BstUI CGCG 1 cut(s) 315
BsuRI GGCC 3 cut(s) 28, 47, 257
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 85, 256, 288
Cfr42I CCGCGG 1 cut(s) 316
Csp6I GTAC 2 cut(s) 67, 145
CviAII CATG 2 cut(s) 167, 178
CviQI GTAC 2 cut(s) 67, 145
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 85, 288
Eco53kI GAGCTC 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 288
EcoO65I GGTNACC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 42, 283
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 2 cut(s) 170, 181
FaiI YATR 4 cut(s) 168, 179, 238, 240
FatI CATG 2 cut(s) 166, 177
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 216
GlaI GCGC 1 cut(s) 279
HaeIII GGCC 3 cut(s) 28, 47, 257
HapII CCGG 2 cut(s) 29, 267
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 170, 181
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 59
HpaII CCGG 2 cut(s) 29, 267
HphI GGTGA 4 cut(s) 66, 130, 302, 352
Hpy166II GTNNAC 2 cut(s) 145, 310
Hpy188I TCNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 145, 310
HpyCH4III ACNGT 2 cut(s) 78, 142
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 112, 227
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 170, 181
HspAI GCGC 1 cut(s) 278
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 227, 269
MaeIII GTNAC 3 cut(s) 136, 244, 340
MalI GATC 1 cut(s) 73
MbiI CCGCTC 1 cut(s) 272
MboI GATC 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 216, 329
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 3 cut(s) 58, 180, 217
MseI TTAA 2 cut(s) 63, 348
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 315
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 2 cut(s) 29, 267
MspR9I CCNGG 2 cut(s) 44, 285
MvaI CCWGG 2 cut(s) 44, 285
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 103, 112, 227
NdeII GATC 1 cut(s) 71
NlaIII CATG 2 cut(s) 170, 181
NlaIV GGNNCC 3 cut(s) 86, 258, 289
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 3 cut(s) 136, 244, 340
PceI AGGCCT 1 cut(s) 47
PpuMI RGGWCCY 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 42, 283
PspEI GGTNACC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 42, 283
PspN4I GGNNCC 3 cut(s) 86, 258, 289
PspPI GGNCC 3 cut(s) 85, 256, 288
PspPPI RGGWCCY 1 cut(s) 288
RsaI GTAC 2 cut(s) 68, 146
RsaNI GTAC 2 cut(s) 67, 145
RseI CAYNNNNRTG 1 cut(s) 332
SacI GAGCTC 1 cut(s) 216
SacII CCGCGG 1 cut(s) 316
SaqAI TTAA 2 cut(s) 63, 348
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 3 cut(s) 85, 256, 288
ScrFI CCNGG 2 cut(s) 44, 285
SduI GDGCHC 2 cut(s) 216, 329
SetI ASST 6 cut(s) 63, 99, 138, 216, 232, 297
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SinI GGWCC 2 cut(s) 85, 288
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 2 cut(s) 62, 215
SmoI CTYRAG 2 cut(s) 62, 215
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 3 cut(s) 272, 313, 315
SstI GAGCTC 1 cut(s) 216
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 42, 283
TaaI ACNGT 2 cut(s) 78, 142
Tru1I TTAA 2 cut(s) 63, 348
Tru9I TTAA 2 cut(s) 63, 348
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 3 cut(s) 136, 244, 340
Tsp45I GTSAC 3 cut(s) 136, 244, 340
TspDTI ATGAA 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 85, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.