Rroxscaffold_2G00150220

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003405
Physical Location & Seq
Reverse (-)
87644277 .. 87646618
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150220.1

Sequence Viewer

Length: 777 bp
ATGTCCGCCCAGAAACCACCAGTCTTCATCCCTGCCTTGGACGACTGCGGACGCCTCCGGATCACCGACCCTAATCCGGTCTGGGAAAAGGAGGTCATGCCCTCAAGACGTGTCATGGGAGACATGCTAAACCTTCCCACAGGTGAGCTCTTGATGATAAACGGTGCGATGGCTGGTGCCTCAGCTTGGTGGCAAGCTGAAGAACCCAACTTTACCCCTGTGATGTACAACCCCAAATTGCCCAATGGACAACGGTTCGTCAAGATGGCACCGACAACTATTGCAAGAATGTACCACTCCACCTCGGCAGTGCTCCCTAACGGAAAAATCCTCGTGGCAGGCAGTAATACTAACCCGGGCTACGACTTCAAGGCCAAGTACCCAACTGAGGTACGGGTGGAGACCTTCACCCCACCTTACATGGATAAGGCTTTGGACATCCACAGGCCGGAAATCAACGCCCAGGCCTCCGACAACAAGCTCAAGTACGGCGCACCGTTCGGGGTCCAGTTCAAGCTGAACGAGCAAGACAAGCCTACAAAGGCTGACATCAAGGTCACCGTGTACGCTGTTCCTTTCACAACACATGGCTACTCCATGAACCAGAGGCTTGTTGTTTTGGCGAACACTGAGCTCAAGGCAGAGGGAGCTGGCTTATATCGTGTCACGGCGTTGGCCCCACCAACCGGAGCGGTGGCGCCACCAGGGTCCTACCTGCTGAATGTGGTTCACCGCGGAGTGCCAAGCACGGGAGTGTGGGTGACGATTAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

258

Amino Acids

28.3

Weight (kDa)

9.19

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 7 - 140 1.5e-57 Glyoxal oxidase N-terminus
GO-like_E_set PF09118 149 - 256 1.3e-26 Galactose oxidase-like, Early set domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 723
AccB1I GGYRCC 3 cut(s) 176, 268, 697
AccBSI CCGCTC 1 cut(s) 692
AccII CGCG 1 cut(s) 735
AccIII TCCGGA 1 cut(s) 57
AciI CCGC 5 cut(s) 6, 48, 692, 733, 735
AclWI GGATC 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 219
AcyI GRCGYC 2 cut(s) 52, 698
AfaI GTAC 6 cut(s) 227, 293, 380, 393, 488, 566
AfiI CCNNNNNNNGG 7 cut(s) 37, 76, 186, 388, 448, 686, 749
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 2 cut(s) 370, 514
AjiI CACGTC 1 cut(s) 110
AjnI CCWGG 2 cut(s) 462, 703
AleI CACNNNNGTG 1 cut(s) 752
AluBI AGCT 7 cut(s) 148, 185, 197, 481, 517, 634, 650
AluI AGCT 7 cut(s) 148, 185, 197, 481, 517, 634, 650
Alw21I GWGCWC 3 cut(s) 150, 315, 636
Alw26I GTCTC 2 cut(s) 114, 395
AlwI GGATC 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 355
Aor13HI TCCGGA 1 cut(s) 57
AoxI GGCC 4 cut(s) 372, 446, 465, 675
AspLEI GCGC 2 cut(s) 494, 700
AspS9I GGNCC 3 cut(s) 505, 676, 708
AsuC2I CCSGG 2 cut(s) 356, 357
AsuHPI GGTGA 6 cut(s) 55, 155, 400, 550, 722, 772
AvaI CYCGRG 1 cut(s) 355
AvaII GGWCC 2 cut(s) 505, 708
BanI GGYRCC 3 cut(s) 176, 268, 697
BanII GRGCYC 2 cut(s) 150, 636
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 3 cut(s) 150, 315, 636
BbvCI CCTCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 163, 259
BceAI ACGGC 2 cut(s) 505, 684
BciT130I CCWGG 2 cut(s) 464, 705
BcnI CCSGG 2 cut(s) 356, 357
BcoDI GTCTC 2 cut(s) 114, 395
BfoI RGCGCY 1 cut(s) 701
BfuAI ACCTGC 1 cut(s) 723
Bme1390I CCNGG 4 cut(s) 356, 357, 464, 705
Bme18I GGWCC 2 cut(s) 505, 708
BmeT110I CYCGRG 1 cut(s) 355
BmgBI CACGTC 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 505, 676, 708
BmiI GGNNCC 6 cut(s) 178, 270, 506, 678, 699, 709
BmrFI CCNGG 4 cut(s) 356, 357, 464, 705
BpiI GAAGAC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 181
BpuEI CTTGAG 3 cut(s) 88, 467, 620
BpuMI CCSGG 2 cut(s) 356, 357
BsaHI GRCGYC 2 cut(s) 52, 698
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 6 cut(s) 36, 303, 355, 462, 704, 733
BsaWI WCCGGW 3 cut(s) 57, 76, 686
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 7 cut(s) 37, 76, 186, 388, 448, 686, 749
Bse1I ACTGG 3 cut(s) 20, 508, 772
BseAI TCCGGA 1 cut(s) 57
BseBI CCWGG 2 cut(s) 464, 705
BseDI CCNNGG 6 cut(s) 36, 303, 355, 462, 704, 733
BseGI GGATG 2 cut(s) 27, 438
BseLI CCNNNNNNNGG 7 cut(s) 37, 76, 186, 388, 448, 686, 749
BseMII CTCAG 3 cut(s) 195, 378, 621
BseNI ACTGG 3 cut(s) 20, 508, 772
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 4 cut(s) 374, 448, 467, 677
BshNI GGYRCC 3 cut(s) 176, 268, 697
BsiHKAI GWGCWC 3 cut(s) 150, 315, 636
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 5 cut(s) 58, 77, 356, 449, 687
BslI CCNNNNNNNGG 7 cut(s) 37, 76, 186, 388, 448, 686, 749
BsmAI GTCTC 2 cut(s) 114, 395
BsnI GGCC 4 cut(s) 374, 448, 467, 677
Bso31I GGTCTC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 3 cut(s) 150, 315, 636
Bsp13I TCCGGA 1 cut(s) 57
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 5 cut(s) 6, 48, 692, 733, 735
BspANI GGCC 4 cut(s) 374, 448, 467, 677
BspCNI CTCAG 3 cut(s) 194, 379, 622
BspEI TCCGGA 1 cut(s) 57
BspFNI CGCG 1 cut(s) 735
BspLI GGNNCC 6 cut(s) 178, 270, 506, 678, 699, 709
BspMI ACCTGC 1 cut(s) 723
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 3 cut(s) 176, 268, 697
BspTNI GGTCTC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 692
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 3 cut(s) 20, 508, 772
BssECI CCNNGG 6 cut(s) 36, 303, 355, 462, 704, 733
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 2 cut(s) 52, 698
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 464, 705
Bst4CI ACNGT 4 cut(s) 164, 255, 498, 562
BstACI GRCGYC 2 cut(s) 52, 698
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 195, 340, 652
BstDEI CTNAG 3 cut(s) 181, 387, 630
BstDSI CCRYGG 1 cut(s) 733
BstEII GGTNACC 1 cut(s) 556
BstF5I GGATG 2 cut(s) 27, 438
BstFNI CGCG 1 cut(s) 735
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 2 cut(s) 494, 700
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 114, 395
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 523, 532, 647
BstNI CCWGG 2 cut(s) 464, 705
BstNSI RCATGY 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 556
BstSCI CCNGG 4 cut(s) 354, 355, 462, 703
BstUI CGCG 1 cut(s) 735
BstV2I GAAGAC 1 cut(s) 16
BsuRI GGCC 4 cut(s) 374, 448, 467, 677
BtgI CCRYGG 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 182
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 27, 438
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 315, 627
BveI ACCTGC 1 cut(s) 723
Cac8I GCNNGC 3 cut(s) 195, 340, 652
CfoI GCGC 2 cut(s) 494, 700
Cfr13I GGNCC 3 cut(s) 505, 676, 708
Cfr42I CCGCGG 1 cut(s) 736
Cfr9I CCCGGG 1 cut(s) 355
CseI GACGC 1 cut(s) 60
Csp6I GTAC 6 cut(s) 226, 292, 379, 392, 487, 565
CviAII CATG 6 cut(s) 97, 115, 124, 421, 587, 598
CviQI GTAC 6 cut(s) 226, 292, 379, 392, 487, 565
DdeI CTNAG 3 cut(s) 181, 387, 630
DinI GGCGCC 1 cut(s) 699
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
Ecl136II GAGCTC 2 cut(s) 148, 634
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 467
Eco24I GRGCYC 2 cut(s) 150, 636
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 2 cut(s) 505, 708
Eco53kI GAGCTC 2 cut(s) 148, 634
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 355
Eco91I GGTNACC 1 cut(s) 556
EcoICRI GAGCTC 2 cut(s) 148, 634
EcoO109I RGGNCCY 1 cut(s) 708
EcoO65I GGTNACC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 462, 703
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 150, 636
EgeI GGCGCC 1 cut(s) 699
EheI GGCGCC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 6 cut(s) 100, 118, 127, 424, 590, 601
FaiI YATR 7 cut(s) 98, 116, 125, 422, 588, 599, 658
FatI CATG 6 cut(s) 96, 114, 123, 420, 586, 597
FokI GGATG 2 cut(s) 14, 425
FriOI GRGCYC 2 cut(s) 150, 636
GlaI GCGC 2 cut(s) 493, 699
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 4 cut(s) 374, 448, 467, 677
HapII CCGG 5 cut(s) 58, 77, 356, 449, 687
HgaI GACGC 1 cut(s) 60
HhaI GCGC 2 cut(s) 494, 700
Hin1I GRCGYC 2 cut(s) 52, 698
Hin1II CATG 6 cut(s) 100, 118, 127, 424, 590, 601
Hin6I GCGC 2 cut(s) 492, 698
HinP1I GCGC 2 cut(s) 492, 698
HpaII CCGG 5 cut(s) 58, 77, 356, 449, 687
HphI GGTGA 6 cut(s) 55, 155, 400, 550, 722, 772
Hpy166II GTNNAC 2 cut(s) 565, 730
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 4 cut(s) 58, 105, 151, 262
Hpy8I GTNNAC 2 cut(s) 565, 730
HpyAV CCTTC 2 cut(s) 143, 415
HpyCH4III ACNGT 4 cut(s) 164, 255, 498, 562
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 523, 532, 647
HpyF3I CTNAG 3 cut(s) 181, 387, 630
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 2 cut(s) 52, 698
Hsp92II CATG 6 cut(s) 100, 118, 127, 424, 590, 601
HspAI GCGC 2 cut(s) 492, 698
KasI GGCGCC 1 cut(s) 697
Kpn2I TCCGGA 1 cut(s) 57
KspI CCGCGG 1 cut(s) 736
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 3 cut(s) 318, 647, 689
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 3 cut(s) 556, 664, 760
MalI GATC 1 cut(s) 62
MbiI CCGCTC 1 cut(s) 692
MboI GATC 1 cut(s) 60
MboII GAAGA 2 cut(s) 16, 212
MhlI GDGCHC 3 cut(s) 150, 315, 636
MluCI AATT 1 cut(s) 236
Mly113I GGCGCC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 495
MroI TCCGGA 1 cut(s) 57
MseI TTAA 1 cut(s) 768
MslI CAYNNNNRTG 1 cut(s) 752
MspA1I CMGCKG 1 cut(s) 735
MspI CCGG 5 cut(s) 58, 77, 356, 449, 687
MspR9I CCNGG 4 cut(s) 356, 357, 464, 705
MvaI CCWGG 2 cut(s) 464, 705
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 3 cut(s) 523, 532, 647
NarI GGCGCC 1 cut(s) 698
NciI CCSGG 2 cut(s) 356, 357
NdeII GATC 1 cut(s) 60
NlaIII CATG 6 cut(s) 100, 118, 127, 424, 590, 601
NlaIV GGNNCC 6 cut(s) 178, 270, 506, 678, 699, 709
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 3 cut(s) 556, 664, 760
NspI RCATGY 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 752
PceI AGGCCT 1 cut(s) 467
PluTI GGCGCC 1 cut(s) 701
PpuMI RGGWCCY 1 cut(s) 708
Psp124BI GAGCTC 2 cut(s) 150, 636
Psp5II RGGWCCY 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 462, 703
PspEI GGTNACC 1 cut(s) 556
PspGI CCWGG 2 cut(s) 462, 703
PspN4I GGNNCC 6 cut(s) 178, 270, 506, 678, 699, 709
PspPI GGNCC 3 cut(s) 505, 676, 708
PspPPI RGGWCCY 1 cut(s) 708
RsaI GTAC 6 cut(s) 227, 293, 380, 393, 488, 566
RsaNI GTAC 6 cut(s) 226, 292, 379, 392, 487, 565
RseI CAYNNNNRTG 1 cut(s) 752
SacI GAGCTC 2 cut(s) 150, 636
SacII CCGCGG 1 cut(s) 736
SaqAI TTAA 1 cut(s) 768
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 3 cut(s) 505, 676, 708
ScrFI CCNGG 4 cut(s) 356, 357, 464, 705
SduI GDGCHC 3 cut(s) 150, 315, 636
SfoI GGCGCC 1 cut(s) 699
Sfr303I CCGCGG 1 cut(s) 736
SgrBI CCGCGG 1 cut(s) 736
SinI GGWCC 2 cut(s) 505, 708
SmaI CCCGGG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 752
SmlI CTYRAG 3 cut(s) 103, 482, 635
SmoI CTYRAG 3 cut(s) 103, 482, 635
Sse9I AATT 1 cut(s) 236
SseBI AGGCCT 1 cut(s) 467
SsiI CCGC 5 cut(s) 6, 48, 692, 733, 735
SspDI GGCGCC 1 cut(s) 697
SstI GAGCTC 2 cut(s) 150, 636
StuI AGGCCT 1 cut(s) 467
StyD4I CCNGG 4 cut(s) 354, 355, 462, 703
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 4 cut(s) 164, 255, 498, 562
TaiI ACGT 1 cut(s) 112
TasI AATT 1 cut(s) 236
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 2 cut(s) 315, 634
TseFI GTSAC 3 cut(s) 556, 664, 760
Tsp45I GTSAC 3 cut(s) 556, 664, 760
TspDTI ATGAA 2 cut(s) 16, 614
TspGWI ACGGA 1 cut(s) 336
TspMI CCCGGG 1 cut(s) 355
TspRI CASTG 2 cut(s) 315, 634
VpaK11BI GGWCC 2 cut(s) 505, 708
XceI RCATGY 1 cut(s) 127
XmaI CCCGGG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.