Rh2DG060900

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003405
Physical Location & Seq
Forward (+)
4491922 .. 4492899
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG060900.1

Sequence Viewer

Length: 807 bp
ATGGCAGCCTTACACATTAAGCTTTTTTGCATCCTTCCTCTCCTCTTCGCCCTTGGCATCAATGCACAATGGCGAGGGCTTCCTTTTATCCCCAATCCGTTAGTTTCACACCATGGATTGGGTTTTAATCTTGACCCCAGCAACGGGGGCCAATTTCAGTTCTTTGACCCCAAGCCCGTCACTTTCAAAGCAGCCGGCGATAAACCTAAACCCAACGCCGTGGGTGAACCCCAACCCGACGCAGGGGGTATACCCAAACGAGCGGTCATTAAAGCCGAAGATGCTAATGCTGTTCCCAACGCACAACCACAGCCGAACTTCCCTATTGGCAATAACCCGGGGGCGTGGGCACTTGTTTCCAATGACGCCGGTGTGTCTGCCATGCATCTAAATGTGCTTCCCAACAACAAGGCCATAATGTACGATGCCTCGGATTTCCATATATCGAACATCAAATTGCCCAACAATGAATGCCTTCCCTGGAACAATAATAAGGGCGAGACAGGAAACGATTGTTTTGCTCATGCAGTTGAATATGATCTTGACAAAAACACAGTTAGACCACTCAAGGTTCAGTTTGATGCATGGTGCTCATCGGGAGGGATTTTGCCCGATGGTAGGTTCGTCAGCACCGGTGGTTGGGTGAACGGATATAGAAGCGCTAGATATATAACCGCATGCAACGACGGCAAATGCGACTTCAAAGAGTACCAAAACGCATTTGCAGAAAATAGATGGTATATATTTCAAAATCATATCAATGCTAAAGAGCAACGGGACATTTTGATTAATGCATTTGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

268

Amino Acids

29.45

Weight (kDa)

6.37

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 128 - 253 3.1e-40 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 250
AciI CCGC 2 cut(s) 263, 675
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 2 cut(s) 422, 710
AfeI AGCGCT 1 cut(s) 661
AfiI CCNNNNNNNGG 7 cut(s) 118, 143, 144, 242, 243, 618, 639
AgeI ACCGGT 1 cut(s) 632
AgsI TTSAA 4 cut(s) 187, 533, 703, 749
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 1 cut(s) 593
Alw26I GTCTC 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 337
Aor51HI AGCGCT 1 cut(s) 661
AoxI GGCC 2 cut(s) 148, 411
ApeKI GCWGC 2 cut(s) 5, 191
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AseI ATTAAT 1 cut(s) 789
AsiGI ACCGGT 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 474
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 2 cut(s) 338, 339
AsuHPI GGTGA 2 cut(s) 236, 655
AvaI CYCGRG 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 593
BbvI GCAGC 2 cut(s) 17, 203
BccI CCATC 2 cut(s) 608, 729
BceAI ACGGC 2 cut(s) 203, 703
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BciT130I CCWGG 1 cut(s) 481
BcnI CCSGG 2 cut(s) 338, 339
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 1 cut(s) 663
BfoI RGCGCY 1 cut(s) 663
BisI GCNGC 2 cut(s) 6, 192
BlsI GCNGC 2 cut(s) 7, 193
Bme1390I CCNGG 3 cut(s) 338, 339, 481
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 3 cut(s) 338, 339, 481
BmsI GCATC 6 cut(s) 39, 66, 271, 394, 415, 571
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 2 cut(s) 338, 339
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 7 cut(s) 52, 112, 219, 337, 338, 429, 479
BsaWI WCCGGW 1 cut(s) 632
Bsc4I CCNNNNNNNGG 7 cut(s) 118, 143, 144, 242, 243, 618, 639
Bse118I RCCGGY 3 cut(s) 194, 368, 632
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 7 cut(s) 52, 112, 219, 337, 338, 429, 479
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 7 cut(s) 118, 143, 144, 242, 243, 618, 639
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 2 cut(s) 17, 203
BseYI CCCAGC 1 cut(s) 137
BshFI GGCC 2 cut(s) 150, 413
BshTI ACCGGT 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 593
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 4 cut(s) 195, 338, 369, 633
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 7 cut(s) 118, 143, 144, 242, 243, 618, 639
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 2 cut(s) 150, 413
BsoBI CYCGRG 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 352, 593
Bsp143I GATC 1 cut(s) 538
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 2 cut(s) 263, 675
BspANI GGCC 2 cut(s) 150, 413
BspLI GGNNCC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 263
BsrFI RCCGGY 3 cut(s) 194, 368, 632
BssAI RCCGGY 3 cut(s) 194, 368, 632
BssECI CCNNGG 7 cut(s) 52, 112, 219, 337, 338, 429, 479
BssMI GATC 1 cut(s) 538
BssNAI GTATAC 1 cut(s) 251
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 52, 112
Bst1107I GTATAC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 2 cut(s) 196, 679
BstDSI CCRYGG 2 cut(s) 112, 219
BstF5I GGATG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 3 cut(s) 147, 281, 687
BstNI CCWGG 1 cut(s) 481
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 3 cut(s) 336, 337, 479
BstSLI GKGCMC 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 17, 203
BstXI CCANNNNNNTGG 1 cut(s) 220
BstZ17I GTATAC 1 cut(s) 251
BsuRI GGCC 2 cut(s) 150, 413
BtgI CCRYGG 2 cut(s) 112, 219
BtsCI GGATG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 196, 679
CfoI GCGC 1 cut(s) 662
Cfr10I RCCGGY 3 cut(s) 194, 368, 632
Cfr13I GGNCC 1 cut(s) 148
Cfr9I CCCGGG 1 cut(s) 337
CseI GACGC 2 cut(s) 248, 374
Csp6I GTAC 2 cut(s) 421, 709
CspAI ACCGGT 1 cut(s) 632
CviAII CATG 5 cut(s) 113, 382, 524, 585, 678
CviJI RGCY 9 cut(s) 8, 22, 79, 150, 175, 194, 275, 313, 413
CviKI_1 RGCY 9 cut(s) 8, 22, 79, 150, 175, 194, 275, 313, 413
CviQI GTAC 2 cut(s) 421, 709
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 52, 112
Eco47III AGCGCT 1 cut(s) 661
Eco88I CYCGRG 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 479
EcoT14I CCWWGG 2 cut(s) 52, 112
EcoT22I ATGCAT 3 cut(s) 387, 586, 796
ErhI CCWWGG 2 cut(s) 52, 112
FaeI CATG 5 cut(s) 116, 385, 527, 588, 681
FaqI GGGAC 1 cut(s) 791
FatI CATG 5 cut(s) 112, 381, 523, 584, 677
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 6, 192
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 6, 192
FspBI CTAG 1 cut(s) 663
GlaI GCGC 1 cut(s) 661
GluI GCNGC 2 cut(s) 6, 192
GsaI CCCAGC 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 663
HaeIII GGCC 2 cut(s) 150, 413
HapII CCGG 4 cut(s) 195, 338, 369, 633
HgaI GACGC 2 cut(s) 248, 374
HhaI GCGC 1 cut(s) 662
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 5 cut(s) 116, 385, 527, 588, 681
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HindIII AAGCTT 1 cut(s) 20
HpaII CCGG 4 cut(s) 195, 338, 369, 633
HphI GGTGA 2 cut(s) 236, 655
Hpy166II GTNNAC 3 cut(s) 227, 251, 646
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 3 cut(s) 131, 542, 597
Hpy8I GTNNAC 3 cut(s) 227, 251, 646
Hpy99I CGWCG 2 cut(s) 242, 689
HpyAV CCTTC 2 cut(s) 44, 485
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4V TGCA 8 cut(s) 30, 65, 385, 527, 584, 681, 725, 794
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 281, 687
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 5 cut(s) 116, 385, 527, 588, 681
HspAI GCGC 1 cut(s) 660
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 538
LpnPI CCDG 9 cut(s) 151, 208, 228, 351, 382, 466, 489, 493, 646
Lsp1109I GCAGC 2 cut(s) 17, 203
LweI GCATC 6 cut(s) 39, 66, 271, 394, 415, 571
MaeI CTAG 1 cut(s) 663
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 540
MbiI CCGCTC 1 cut(s) 263
MboI GATC 1 cut(s) 538
MboII GAAGA 2 cut(s) 37, 290
MhlI GDGCHC 2 cut(s) 352, 593
MluCI AATT 2 cut(s) 152, 455
MnlI CCTC 5 cut(s) 48, 53, 68, 439, 593
Mph1103I ATGCAT 3 cut(s) 387, 586, 796
MroNI GCCGGC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 5 cut(s) 18, 126, 270, 789, 805
MslI CAYNNNNRTG 2 cut(s) 390, 759
MspI CCGG 4 cut(s) 195, 338, 369, 633
MspR9I CCNGG 3 cut(s) 338, 339, 481
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 1 cut(s) 481
MwoI GCNNNNNNNGC 3 cut(s) 147, 281, 687
NaeI GCCGGC 1 cut(s) 196
NciI CCSGG 2 cut(s) 338, 339
NcoI CCATGG 1 cut(s) 112
NdeII GATC 1 cut(s) 538
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 5 cut(s) 116, 385, 527, 588, 681
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 3 cut(s) 387, 586, 796
NspI RCATGY 1 cut(s) 681
PaeI GCATGC 1 cut(s) 681
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PctI GAATGC 1 cut(s) 476
PdiI GCCGGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 474
PflMI CCANNNNNTGG 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 632
PkrI GCNGC 2 cut(s) 7, 193
PshBI ATTAAT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 479
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 2 cut(s) 422, 710
RsaNI GTAC 2 cut(s) 421, 709
RseI CAYNNNNRTG 2 cut(s) 390, 759
SaqAI TTAA 5 cut(s) 18, 126, 270, 789, 805
SatI GCNGC 2 cut(s) 6, 192
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 3 cut(s) 338, 339, 481
SduI GDGCHC 2 cut(s) 352, 593
SetI ASST 4 cut(s) 24, 208, 573, 623
SfaNI GCATC 6 cut(s) 39, 66, 271, 394, 415, 571
SgrAI CRCCGGYG 2 cut(s) 368, 632
SmaI CCCGGG 1 cut(s) 339
SmiMI CAYNNNNRTG 2 cut(s) 390, 759
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SphI GCATGC 1 cut(s) 681
Sse9I AATT 2 cut(s) 152, 455
SsiI CCGC 2 cut(s) 263, 675
SspMI CTAG 1 cut(s) 663
StyD4I CCNGG 3 cut(s) 336, 337, 479
StyI CCWWGG 2 cut(s) 52, 112
TaaI ACNGT 1 cut(s) 556
TaqI TCGA 1 cut(s) 446
TasI AATT 2 cut(s) 152, 455
Tru1I TTAA 5 cut(s) 18, 126, 270, 789, 805
Tru9I TTAA 5 cut(s) 18, 126, 270, 789, 805
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 5, 191
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 483
TspGWI ACGGA 2 cut(s) 87, 663
TspMI CCCGGG 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 118
VspI ATTAAT 1 cut(s) 789
XceI RCATGY 1 cut(s) 681
XmaI CCCGGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 1 cut(s) 663
Zsp2I ATGCAT 3 cut(s) 387, 586, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.