Rh6BG442300

galactose

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003405
Physical Location & Seq
Reverse (-)
65986899 .. 65988653
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG442300.1

Sequence Viewer

Length: 1359 bp
ATGTCCATCTTGCTCAAATCCCTTGCTCCTCTCTCCCTCTTCTTCTTCTTCTTCTTTACTTTTGGGAATTCTAGGCTTCCAAAAATCCCGCTTATACTTTTTTTCAATGGAGGAGAATATGAATATTACAAAGCCGTACACAATCCAAATGAAGCGATCAAACATGAGAAAGAGTATAGAGGTAGGTGGGAATTGGTTTCAGAGAATTCAGGTGTATCAGCCATGCACATAATCATAATGCCTAACAGTAATAAGGCCATTATGTTTGATGCTGCTGGTTTTGGCCAATCTGAGATCTCATTGCCCGCCGGAGATTGTCGTCGGGTTTTGGACAGCAGACAGGAAGTTGAAGTTTATGAATTGGATTGCTGGGCTCATGCTGTGGAATTTGACATTGACACTGCAGCTATTAGGCCACTTAAGATTTTAACAGATACTTGGTGCTCATCTGGGGGGTTATCAGCTAATGGTACACTTGTGCAAACTGGTGGATGGGATGAAGGAGGAAGGTCTGTGAGATACTTCAATGGATGCAGTAGTTGCGATTGGGAGGAGTACCCCATATCACTTTCCGGCTTAAGATGGTTTTCTACCCAACATATTTTGCCAAATGGGAATTTCATAGTGGTTGGAGGCCGTCGGATGTTCAATTACGAGTATGTCCCTAAGGCGGGAAGTTCGAATAAAATAAGCTACGCTTTATCATTTCTCCAAGAGACGAGTGATCTTGTAGAGAACAATCTCTACCCATTTGTCTTCCTCTCCACAGATGGCAACCTCCTAATTTTCGCTAACAATCGATCGATTTTGCTTAACCCAACCACTAATAAAGTCGTACGCGAACTCCCCGTCCTTGATGGTGGGTCTCGTAACTACCCTGCCTCCGGGATGGCGGCATTGCTACCTATAAAGCTCAATGACCCGAACCCGAATGTAATCCGAGCTGAAATTCTGGTCTGCGGTGGAGCGGATCCCAGAGCGGGAAAGTTTGTTCAAAAGGGTATATACGCAACTGCACTACAAGATTGCGGAAGGATTGATATAACCAACCCAAAAGCCACGTGGCGAAAGGAGATGATGCCGACGCCAAGGATCATGGGAGATATGGTGATCCTTCCCACAGGTGATATCCTAATGATTAATGGAGCCAAAGAGGGCACAGCCGGGTTGAATTTTGCGGAGGATCCAAATGTTACTCCACTAATTTACAAACCCGATAACCCAATAATCCGACGGTTGATGGAGCTAAAGGAAACAAAAATTAGGGTTGGCAATGGGGAGGGTAGGGTCAGGGGATTAAATTACCATCCCCATACCCGACTTCATTTTCCATCCCCTTACCCGCCCCAATCCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

452

Amino Acids

50.34

Weight (kDa)

6.72

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 75 - 421 1.3e-138 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 968, 980
AccII CGCG 1 cut(s) 840
AclWI GGATC 6 cut(s) 965, 978, 1100, 1105, 1178, 1191
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 6 cut(s) 67, 205, 386, 616, 948, 1171
AcvI CACGTG 1 cut(s) 1062
AcyI GRCGYC 1 cut(s) 1085
AfaI GTAC 4 cut(s) 138, 472, 557, 837
AfiI CCNNNNNNNGG 4 cut(s) 670, 671, 884, 980
AflII CTTAAG 2 cut(s) 419, 577
AgsI TTSAA 6 cut(s) 106, 350, 526, 649, 995, 1171
AloI GAACNNNNNNTCC 4 cut(s) 834, 866, 975, 1007
AluBI AGCT 6 cut(s) 407, 464, 693, 913, 944, 1246
AluI AGCT 6 cut(s) 407, 464, 693, 913, 944, 1246
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 2 cut(s) 710, 870
AlwI GGATC 6 cut(s) 965, 978, 1100, 1105, 1178, 1191
AoxI GGCC 4 cut(s) 255, 283, 413, 634
ApeKI GCWGC 2 cut(s) 272, 404
ApoI RAATTY 6 cut(s) 67, 205, 386, 616, 948, 1171
ArsI GACNNNNNNTTYG 2 cut(s) 834, 866
AseI ATTAAT 1 cut(s) 1140
AsuC2I CCSGG 2 cut(s) 886, 1165
AsuHPI GGTGA 2 cut(s) 1120, 1136
AsuII TTCGAA 1 cut(s) 680
AxyI CCTNAGG 1 cut(s) 666
BaeGI GKGCMC 1 cut(s) 1160
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BalI TGGCCA 1 cut(s) 285
BamHI GGATCC 2 cut(s) 970, 1183
BanII GRGCYC 1 cut(s) 376
BbrPI CACGTG 1 cut(s) 1062
BbsI GAAGAC 1 cut(s) 748
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 259, 416
BccI CCATC 9 cut(s) 14, 486, 576, 764, 851, 883, 1234, 1314, 1339
BceAI ACGGC 2 cut(s) 119, 621
BcnI CCSGG 2 cut(s) 886, 1165
BcoDI GTCTC 2 cut(s) 710, 870
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 402
BfrI CTTAAG 2 cut(s) 419, 577
BglII AGATCT 1 cut(s) 294
BisI GCNGC 3 cut(s) 273, 405, 894
BlsI GCNGC 3 cut(s) 274, 406, 895
Bme1390I CCNGG 2 cut(s) 886, 1165
BmiI GGNNCC 3 cut(s) 972, 1147, 1185
BmrFI CCNGG 2 cut(s) 886, 1165
BmsI GCATC 3 cut(s) 259, 521, 1068
BpiI GAAGAC 1 cut(s) 748
Bpu14I TTCGAA 1 cut(s) 680
BpuMI CCSGG 2 cut(s) 886, 1165
Bsa29I ATCGAT 2 cut(s) 799, 803
BsaAI YACGTR 1 cut(s) 1062
BsaHI GRCGYC 1 cut(s) 1085
BsaI GGTCTC 1 cut(s) 870
BsaJI CCNNGG 1 cut(s) 1088
BsaXI ACNNNNNCTCC 6 cut(s) 828, 858, 866, 896, 1092, 1122
Bsc4I CCNNNNNNNGG 4 cut(s) 670, 671, 884, 980
Bse1I ACTGG 1 cut(s) 490
Bse21I CCTNAGG 1 cut(s) 666
Bse3DI GCAATG 3 cut(s) 299, 896, 1279
BseCI ATCGAT 2 cut(s) 799, 803
BseDI CCNNGG 1 cut(s) 1088
BseGI GGATG 7 cut(s) 497, 502, 536, 648, 894, 1306, 1331
BseLI CCNNNNNNNGG 4 cut(s) 670, 671, 884, 980
BseMI GCAATG 3 cut(s) 299, 896, 1279
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 3 cut(s) 18, 126, 566
BseSI GKGCMC 1 cut(s) 1160
BseXI GCAGC 2 cut(s) 259, 416
BseYI CCCAGC 1 cut(s) 369
BsgI GTGCAG 1 cut(s) 999
Bsh1236I CGCG 1 cut(s) 840
Bsh1285I CGRYCG 1 cut(s) 803
BshFI GGCC 4 cut(s) 257, 285, 415, 636
BshVI ATCGAT 2 cut(s) 799, 803
BsiEI CGRYCG 1 cut(s) 803
BsiHKAI GWGCWC 1 cut(s) 446
BsiSI CCGG 4 cut(s) 309, 573, 885, 1164
BsiWI CGTACG 1 cut(s) 835
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 4 cut(s) 670, 671, 884, 980
BsmAI GTCTC 2 cut(s) 710, 870
BsmBI CGTCTC 1 cut(s) 710
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 4 cut(s) 257, 285, 415, 636
Bso31I GGTCTC 1 cut(s) 870
Bsp119I TTCGAA 1 cut(s) 680
Bsp1286I GDGCHC 3 cut(s) 376, 446, 1160
Bsp143I GATC 8 cut(s) 156, 294, 724, 800, 970, 1092, 1110, 1183
BspANI GGCC 4 cut(s) 257, 285, 415, 636
BspCNI CTCAG 1 cut(s) 283
BspDI ATCGAT 2 cut(s) 799, 803
BspFNI CGCG 1 cut(s) 840
BspLI GGNNCC 3 cut(s) 972, 1147, 1185
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 6 cut(s) 965, 978, 1100, 1105, 1178, 1191
BspT104I TTCGAA 1 cut(s) 680
BspTI CTTAAG 2 cut(s) 419, 577
BspTNI GGTCTC 1 cut(s) 870
BsrBI CCGCTC 2 cut(s) 968, 980
BsrDI GCAATG 3 cut(s) 299, 896, 1279
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 1088
BssMI GATC 8 cut(s) 156, 294, 724, 800, 970, 1092, 1110, 1183
BssNI GRCGYC 1 cut(s) 1085
BssT1I CCWWGG 1 cut(s) 1088
Bst4CI ACNGT 2 cut(s) 248, 1236
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 1085
BstAFI CTTAAG 2 cut(s) 419, 577
BstAPI GCANNNNNTGC 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 1062
BstBI TTCGAA 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 291, 666
BstF5I GGATG 7 cut(s) 497, 502, 536, 648, 894, 1306, 1331
BstFNI CGCG 1 cut(s) 840
BstKTI GATC 8 cut(s) 159, 297, 727, 803, 973, 1095, 1113, 1186
BstMAI GTCTC 2 cut(s) 710, 870
BstMBI GATC 8 cut(s) 156, 294, 724, 800, 970, 1092, 1110, 1183
BstMCI CGRYCG 1 cut(s) 803
BstMWI GCNNNNNNNGC 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 884, 1163
BstSFI CTRYAG 1 cut(s) 402
BstSLI GKGCMC 1 cut(s) 1160
BstUI CGCG 1 cut(s) 840
BstV1I GCAGC 2 cut(s) 259, 416
BstV2I GAAGAC 1 cut(s) 748
BstX2I RGATCY 3 cut(s) 294, 970, 1183
BstYI RGATCY 3 cut(s) 294, 970, 1183
Bsu15I ATCGAT 2 cut(s) 799, 803
Bsu36I CCTNAGG 1 cut(s) 666
BsuRI GGCC 4 cut(s) 257, 285, 415, 636
BsuTUI ATCGAT 2 cut(s) 799, 803
BtsCI GGATG 7 cut(s) 497, 502, 536, 648, 894, 1306, 1331
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 306
ClaI ATCGAT 2 cut(s) 799, 803
CseI GACGC 1 cut(s) 1093
Csp6I GTAC 4 cut(s) 137, 471, 556, 836
CviAII CATG 4 cut(s) 164, 223, 377, 1096
CviQI GTAC 4 cut(s) 137, 471, 556, 836
DdeI CTNAG 2 cut(s) 291, 666
DpnI GATC 8 cut(s) 158, 296, 726, 802, 972, 1094, 1112, 1185
DpnII GATC 8 cut(s) 156, 294, 724, 800, 970, 1092, 1110, 1183
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 1088
Eco24I GRGCYC 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 870
Eco32I GATATC 1 cut(s) 1129
Eco72I CACGTG 1 cut(s) 1062
Eco81I CCTNAGG 1 cut(s) 666
EcoRI GAATTC 2 cut(s) 67, 205
EcoRV GATATC 1 cut(s) 1129
EcoT14I CCWWGG 1 cut(s) 1088
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 1088
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 4 cut(s) 167, 226, 380, 1099
FalI AAGNNNNNCTT 2 cut(s) 682, 714
FaqI GGGAC 1 cut(s) 647
FatI CATG 4 cut(s) 163, 222, 376, 1095
FauI CCCGC 5 cut(s) 96, 313, 664, 973, 1350
Fnu4HI GCNGC 3 cut(s) 273, 405, 894
FokI GGATG 7 cut(s) 504, 509, 543, 655, 901, 1293, 1318
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 3 cut(s) 273, 405, 894
FspBI CTAG 1 cut(s) 72
GluI GCNGC 3 cut(s) 273, 405, 894
GsaI CCCAGC 1 cut(s) 373
HaeIII GGCC 4 cut(s) 257, 285, 415, 636
HapII CCGG 4 cut(s) 309, 573, 885, 1164
HgaI GACGC 1 cut(s) 1093
Hin1I GRCGYC 1 cut(s) 1085
Hin1II CATG 4 cut(s) 167, 226, 380, 1099
HpaII CCGG 4 cut(s) 309, 573, 885, 1164
HphI GGTGA 2 cut(s) 1120, 1136
Hpy166II GTNNAC 2 cut(s) 139, 473
Hpy188I TCNGA 5 cut(s) 202, 292, 642, 941, 1232
Hpy8I GTNNAC 2 cut(s) 139, 473
Hpy99I CGWCG 4 cut(s) 324, 642, 1087, 1236
HpyAV CCTTC 4 cut(s) 494, 501, 1026, 1124
HpyCH4III ACNGT 2 cut(s) 248, 1236
HpyCH4IV ACGT 1 cut(s) 1061
HpyCH4V TGCA 5 cut(s) 226, 404, 481, 534, 1016
HpyF10VI GCNNNNNNNGC 1 cut(s) 540
HpyF3I CTNAG 2 cut(s) 291, 666
HpySE526I ACGT 1 cut(s) 1061
Hsp92I GRCGYC 1 cut(s) 1085
Hsp92II CATG 4 cut(s) 167, 226, 380, 1099
Kzo9I GATC 8 cut(s) 156, 294, 724, 800, 970, 1092, 1110, 1183
LmnI GCTCC 4 cut(s) 31, 965, 1145, 1243
Lsp1109I GCAGC 2 cut(s) 259, 416
LweI GCATC 3 cut(s) 259, 521, 1068
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 1061
MaeIII GTNAC 2 cut(s) 869, 1192
MalI GATC 8 cut(s) 158, 296, 726, 802, 972, 1094, 1112, 1185
MbiI CCGCTC 2 cut(s) 968, 980
MboI GATC 8 cut(s) 156, 294, 724, 800, 970, 1092, 1110, 1183
MboII GAAGA 6 cut(s) 31, 34, 37, 40, 43, 748
MflI RGATCY 3 cut(s) 294, 970, 1183
MhlI GDGCHC 3 cut(s) 376, 446, 1160
MlsI TGGCCA 1 cut(s) 285
MluNI TGGCCA 1 cut(s) 285
MmeI TCCRAC 3 cut(s) 610, 620, 1255
Mox20I TGGCCA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 285
MseI TTAA 6 cut(s) 420, 428, 578, 813, 1140, 1298
Msp20I TGGCCA 1 cut(s) 285
MspCI CTTAAG 2 cut(s) 419, 577
MspI CCGG 4 cut(s) 309, 573, 885, 1164
MspR9I CCNGG 2 cut(s) 886, 1165
MvnI CGCG 1 cut(s) 840
MwoI GCNNNNNNNGC 1 cut(s) 540
NciI CCSGG 2 cut(s) 886, 1165
NdeII GATC 8 cut(s) 156, 294, 724, 800, 970, 1092, 1110, 1183
NlaIII CATG 4 cut(s) 167, 226, 380, 1099
NlaIV GGNNCC 3 cut(s) 972, 1147, 1185
NspV TTCGAA 1 cut(s) 680
Pfl23II CGTACG 1 cut(s) 835
PfoI TCCNGGA 1 cut(s) 884
PkrI GCNGC 3 cut(s) 274, 406, 895
Ple19I CGATCG 1 cut(s) 803
PmaCI CACGTG 1 cut(s) 1062
PmlI CACGTG 1 cut(s) 1062
Ppu21I YACGTR 1 cut(s) 1062
PshBI ATTAAT 1 cut(s) 1140
PspCI CACGTG 1 cut(s) 1062
PspFI CCCAGC 1 cut(s) 369
PspLI CGTACG 1 cut(s) 835
PspN4I GGNNCC 3 cut(s) 972, 1147, 1185
PsrI GAACNNNNNNTAC 2 cut(s) 728, 760
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 3 cut(s) 294, 970, 1183
PvuI CGATCG 1 cut(s) 803
RsaI GTAC 4 cut(s) 138, 472, 557, 837
RsaNI GTAC 4 cut(s) 137, 471, 556, 836
SaqAI TTAA 6 cut(s) 420, 428, 578, 813, 1140, 1298
SatI GCNGC 3 cut(s) 273, 405, 894
Sau3AI GATC 8 cut(s) 156, 294, 724, 800, 970, 1092, 1110, 1183
ScrFI CCNGG 2 cut(s) 886, 1165
SduI GDGCHC 3 cut(s) 376, 446, 1160
SfaNI GCATC 3 cut(s) 259, 521, 1068
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 680
SmlI CTYRAG 2 cut(s) 419, 577
SmoI CTYRAG 2 cut(s) 419, 577
SspI AATATT 1 cut(s) 125
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 884, 1163
StyI CCWWGG 1 cut(s) 1088
TaaI ACNGT 2 cut(s) 248, 1236
TaiI ACGT 1 cut(s) 1064
TaqI TCGA 3 cut(s) 680, 799, 803
TauI GCSGC 1 cut(s) 896
Tru1I TTAA 6 cut(s) 420, 428, 578, 813, 1140, 1298
Tru9I TTAA 6 cut(s) 420, 428, 578, 813, 1140, 1298
TscAI CASTG 1 cut(s) 406
TseI GCWGC 2 cut(s) 272, 404
TspDTI ATGAA 6 cut(s) 135, 165, 372, 513, 610, 1313
TspRI CASTG 1 cut(s) 406
Vha464I CTTAAG 2 cut(s) 419, 577
VspI ATTAAT 1 cut(s) 1140
XapI RAATTY 6 cut(s) 67, 205, 386, 616, 948, 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 1059
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.