MD15G1094900.v1.1

galactose

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003405
Physical Location & Seq
Reverse (-)
6640216 .. 6640603
388 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1094900.v1.1.491

Sequence Viewer

Length: 273 bp
ATGGTGGGTCTTGAAACTACCCTGCATCCGGCACTGGCGGCATTGCTACCTATAAATCTCAGTGACCCGAACCCGAAAGCAATCCTGGCCGAAATTATAATATGCGGTGGAGCGGATCCTAGAGCGGGAAAGTTAGTTGAGAAAGGTATTTTCGTAACTGCATTGCAAGATTGTGGAAGGATTGATATAACAGACCCTAAAATCCACATGGCAGAAGCAGATGATGCCAACTCCAAGGACTATGGGAGATCTGCTGATCCTTCCCACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

91

Amino Acids

9.49

Weight (kDa)

5.14

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 12 - 68 5.7e-10 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AccBSI CCGCTC 2 cut(s) 113, 125
AciI CCGC 4 cut(s) 38, 105, 113, 125
AclWI GGATC 3 cut(s) 110, 123, 251
AcoI YGGCCR 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 28, 125
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 84
AlwI GGATC 3 cut(s) 110, 123, 251
AoxI GGCC 1 cut(s) 87
BamHI GGATCC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 248
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 2 cut(s) 34, 214
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 125
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 2 cut(s) 41, 161
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 28, 125
BseMI GCAATG 2 cut(s) 41, 161
BseMII CTCAG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 39
BshFI GGCC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 28, 125
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 115, 248, 256
BspACI CCGC 4 cut(s) 38, 105, 113, 125
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 3 cut(s) 110, 123, 251
BsrBI CCGCTC 2 cut(s) 113, 125
BsrDI GCAATG 2 cut(s) 41, 161
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 3 cut(s) 115, 248, 256
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 3 cut(s) 118, 251, 259
BstMBI GATC 3 cut(s) 115, 248, 256
BstMWI GCNNNNNNNGC 3 cut(s) 38, 86, 224
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 115, 248
BstYI RGATCY 2 cut(s) 115, 248
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 32, 67
CviAII CATG 1 cut(s) 208
CviJI RGCY 1 cut(s) 89
CviKI_1 RGCY 1 cut(s) 89
DdeI CTNAG 1 cut(s) 59
DpnI GATC 3 cut(s) 117, 250, 258
DpnII GATC 3 cut(s) 115, 248, 256
EaeI YGGCCR 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 211
FaiI YATR 6 cut(s) 53, 98, 103, 188, 209, 243
FatI CATG 1 cut(s) 207
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 29
Hin1II CATG 1 cut(s) 211
HpaII CCGG 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 171, 270
HpyCH4V TGCA 3 cut(s) 25, 161, 166
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 86, 224
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 211
Kzo9I GATC 3 cut(s) 115, 248, 256
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 20, 35, 42, 71, 98
LweI GCATC 2 cut(s) 34, 214
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 62, 154
MalI GATC 3 cut(s) 117, 250, 258
MbiI CCGCTC 2 cut(s) 113, 125
MboI GATC 3 cut(s) 115, 248, 256
MflI RGATCY 2 cut(s) 115, 248
MluCI AATT 1 cut(s) 93
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 38, 86, 224
NdeII GATC 3 cut(s) 115, 248, 256
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 40
PsiI TTATAA 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 117
PsuI RGATCY 2 cut(s) 115, 248
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 115, 248, 256
ScrFI CCNGG 1 cut(s) 86
SetI ASST 2 cut(s) 52, 148
SfaNI GCATC 2 cut(s) 34, 214
Sse9I AATT 1 cut(s) 93
SsiI CCGC 4 cut(s) 38, 105, 113, 125
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 234
TasI AATT 1 cut(s) 93
TauI GCSGC 1 cut(s) 41
TscAI CASTG 2 cut(s) 39, 67
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspRI CASTG 2 cut(s) 39, 67
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.