Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025077.1

Orthogroup ID

OG0003405

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 650

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025077.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 650 bp

atggggaattcatagtggttggaggccgccggatgttcaattacgagtatgtccctgaggcgggaagtttcaataaaataagctacgctttatcatttctccaagagacgagtgaccctgtagagaacaatctctacccctttgtcttcctctccacagatggcaacctcctcattttcgctaacaatcgatcgattttgcttaacccaaccactaataaagtcgtacgcgaactccccgtccttgatggtgggtctcgtaactaccctgcctccgggatggcggcattgctacctataaagctcaatgacccgaacccgaatgtaatccgagctgaaattctggtctgcggtggagcggatccgagagcggggaagtttgttgaaaagggtatatacgtaactgcactacaagattgcggaaggattgatataaccaacccaaaagccacgtggcgaaaggagatgatgccgacgccaaggatcatgggagatatggtgatccttcccacagatgatatccttttgattaatggagccaaagagggcacagccgggttgaattttgcggaggatccgaatgttactccagtaatttataaacccgacaacccaataacccgacggttcatggagctaaaggaaacaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1929 Glyoxal_oxid_N

Protein Analysis

216

Amino Acids

23.88

Weight (kDa)

5.36

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67290 AT5G19580
fragaria_vesca	FvH4_1g05670 FvH4_2g35740
malus_domestica	MD02G1057700.v1.1 MD14G1235700.v1.1 MD15G1094900.v1.1 MD15G1095000.v1.1 MD15G1192100.v1.1
prunus_persica	Prupe.1G450000_v2.0.a1 Prupe.7G225100_v2.0.a1
pyrus_communis	pycom15g08750 pycom15g17200
rosa_chinensis	RchiOBHm_Chr2g0091311 RchiOBHm_Chr6g0306041
rosa_laevigata	RLG00000010829 RLG00000016210 RLG00000032216
rosa_multiflora	Rmu_sc0002270.1_g000045 Rmu_sc0025077.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150220 Rroxscaffold_7G00162100
rosa_rugosa	Rorug02G0016200 Rorug06G0346600
rosa_samantha	Rh2AG061300 Rh2BG060400 Rh2CG062300 Rh2DG060900 Rh2DG061000 Rh6AG458600 Rh6BG442300 Rh6CG473000 Rh6DG459200 Rh7BG304600
rosa_wichuraiana	Rw2G004860 Rw6G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
AccBSI	CCGCTC	2 cut(s)	358, 370
AccII	CGCG	1 cut(s)	230
AciI	CCGC	8 cut(s)	27, 61, 283, 350, 358, 370, 419, 568
AclWI	GGATC	6 cut(s)	355, 368, 490, 495, 568, 581
AcsI	RAATTY	3 cut(s)	7, 338, 561
AcvI	CACGTG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	475
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	4 cut(s)	60, 61, 274, 370
AgsI	TTSAA	4 cut(s)	39, 72, 385, 561
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	83, 303, 334, 636
AluI	AGCT	4 cut(s)	83, 303, 334, 636
Alw26I	GTCTC	2 cut(s)	100, 260
AlwI	GGATC	6 cut(s)	355, 368, 490, 495, 568, 581
AoxI	GGCC	1 cut(s)	24
ApoI	RAATTY	3 cut(s)	7, 338, 561
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AseI	ATTAAT	1 cut(s)	530
AsuC2I	CCSGG	2 cut(s)	276, 555
AsuHPI	GGTGA	1 cut(s)	510
AxyI	CCTNAGG	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	550
BamHI	GGATCC	2 cut(s)	360, 573
BbrPI	CACGTG	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	138
BccI	CCATC	3 cut(s)	154, 241, 273
BcnI	CCSGG	2 cut(s)	276, 555
BcoDI	GTCTC	2 cut(s)	100, 260
BfmI	CTRYAG	1 cut(s)	119
BisI	GCNGC	2 cut(s)	27, 284
BlsI	GCNGC	2 cut(s)	28, 285
Bme1390I	CCNGG	2 cut(s)	276, 555
BmiI	GGNNCC	3 cut(s)	362, 537, 575
BmrFI	CCNGG	2 cut(s)	276, 555
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	276, 555
Bsa29I	ATCGAT	2 cut(s)	189, 193
BsaAI	YACGTR	2 cut(s)	399, 452
BsaHI	GRCGYC	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	478
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 256, 286, 482, 512
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 61, 274, 370
Bse1I	ACTGG	1 cut(s)	589
Bse21I	CCTNAGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	286
BseCI	ATCGAT	2 cut(s)	189, 193
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	2 cut(s)	38, 284
BseLI	CCNNNNNNNGG	4 cut(s)	60, 61, 274, 370
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	550
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	26
BshVI	ATCGAT	2 cut(s)	189, 193
BsiEI	CGRYCG	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	30, 275, 554
BsiWI	CGTACG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	4 cut(s)	60, 61, 274, 370
BsmAI	GTCTC	2 cut(s)	100, 260
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	5 cut(s)	190, 360, 482, 500, 573
BspACI	CCGC	8 cut(s)	27, 61, 283, 350, 358, 370, 419, 568
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	48
BspDI	ATCGAT	2 cut(s)	189, 193
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	3 cut(s)	362, 537, 575
BspPI	GGATC	6 cut(s)	355, 368, 490, 495, 568, 581
BspTNI	GGTCTC	1 cut(s)	260
BsrBI	CCGCTC	2 cut(s)	358, 370
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	5 cut(s)	190, 360, 482, 500, 573
BssNI	GRCGYC	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	626
BstACI	GRCGYC	1 cut(s)	475
BstBAI	YACGTR	2 cut(s)	399, 452
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	38, 284
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	5 cut(s)	193, 363, 485, 503, 576
BstMAI	GTCTC	2 cut(s)	100, 260
BstMBI	GATC	5 cut(s)	190, 360, 482, 500, 573
BstMCI	CGRYCG	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	274, 553
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	550
BstSNI	TACGTA	1 cut(s)	399
BstUI	CGCG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	360, 573
BstYI	RGATCY	2 cut(s)	360, 573
Bsu15I	ATCGAT	2 cut(s)	189, 193
Bsu36I	CCTNAGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	26
BsuTUI	ATCGAT	2 cut(s)	189, 193
BtsCI	GGATG	2 cut(s)	38, 284
ClaI	ATCGAT	2 cut(s)	189, 193
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	486, 630
CviJI	RGCY	8 cut(s)	26, 83, 303, 334, 448, 538, 553, 636
CviKI_1	RGCY	8 cut(s)	26, 83, 303, 334, 448, 538, 553, 636
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	5 cut(s)	192, 362, 484, 502, 575
DpnII	GATC	5 cut(s)	190, 360, 482, 500, 573
Eco105I	TACGTA	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	452
Eco81I	CCTNAGG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	2 cut(s)	489, 633
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	485, 629
FauI	CCCGC	2 cut(s)	54, 363
Fnu4HI	GCNGC	2 cut(s)	27, 284
FokI	GGATG	2 cut(s)	45, 291
Fsp4HI	GCNGC	2 cut(s)	27, 284
GluI	GCNGC	2 cut(s)	27, 284
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	3 cut(s)	30, 275, 554
HgaI	GACGC	1 cut(s)	483
Hin1I	GRCGYC	1 cut(s)	475
Hin1II	CATG	2 cut(s)	489, 633
HpaII	CCGG	3 cut(s)	30, 275, 554
HphI	GGTGA	1 cut(s)	510
Hpy188I	TCNGA	3 cut(s)	331, 365, 578
Hpy99I	CGWCG	2 cut(s)	477, 626
HpyAV	CCTTC	2 cut(s)	416, 514
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	2 cut(s)	398, 451
HpyCH4V	TGCA	1 cut(s)	406
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	398, 451
Hsp92I	GRCGYC	1 cut(s)	475
Hsp92II	CATG	2 cut(s)	489, 633
Kzo9I	GATC	5 cut(s)	190, 360, 482, 500, 573
LmnI	GCTCC	3 cut(s)	355, 535, 633
LpnPI	CCDG	8 cut(s)	43, 68, 131, 281, 288, 328, 567, 602
LweI	GCATC	1 cut(s)	458
MaeII	ACGT	2 cut(s)	398, 451
MaeIII	GTNAC	4 cut(s)	112, 259, 399, 582
MalI	GATC	5 cut(s)	192, 362, 484, 502, 575
MbiI	CCGCTC	2 cut(s)	358, 370
MboI	GATC	5 cut(s)	190, 360, 482, 500, 573
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	2 cut(s)	360, 573
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	5 cut(s)	7, 39, 338, 561, 593
MnlI	CCTC	8 cut(s)	16, 51, 160, 178, 181, 282, 537, 564
MseI	TTAA	2 cut(s)	203, 530
MspI	CCGG	3 cut(s)	30, 275, 554
MspR9I	CCNGG	2 cut(s)	276, 555
MvnI	CGCG	1 cut(s)	230
NciI	CCSGG	2 cut(s)	276, 555
NdeII	GATC	5 cut(s)	190, 360, 482, 500, 573
NlaIII	CATG	2 cut(s)	489, 633
NlaIV	GGNNCC	3 cut(s)	362, 537, 575
NmuCI	GTSAC	1 cut(s)	112
Pfl23II	CGTACG	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	28, 285
Ple19I	CGATCG	1 cut(s)	193
PmaCI	CACGTG	1 cut(s)	452
PmlI	CACGTG	1 cut(s)	452
Ppu21I	YACGTR	2 cut(s)	399, 452
PshBI	ATTAAT	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	599
PspCI	CACGTG	1 cut(s)	452
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	362, 537, 575
PsrI	GAACNNNNNNTAC	2 cut(s)	118, 150
PsuI	RGATCY	2 cut(s)	360, 573
PvuI	CGATCG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	203, 530
SatI	GCNGC	2 cut(s)	27, 284
Sau3AI	GATC	5 cut(s)	190, 360, 482, 500, 573
ScrFI	CCNGG	2 cut(s)	276, 555
SduI	GDGCHC	1 cut(s)	550
SetI	ASST	8 cut(s)	85, 170, 297, 305, 336, 401, 454, 638
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	119
SnaBI	TACGTA	1 cut(s)	399
Sse9I	AATT	5 cut(s)	7, 39, 338, 561, 593
SsiI	CCGC	8 cut(s)	27, 61, 283, 350, 358, 370, 419, 568
StyD4I	CCNGG	2 cut(s)	274, 553
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	401, 454
TaqI	TCGA	2 cut(s)	189, 193
TasI	AATT	5 cut(s)	7, 39, 338, 561, 593
TauI	GCSGC	2 cut(s)	29, 286
Tru1I	TTAA	2 cut(s)	203, 530
Tru9I	TTAA	2 cut(s)	203, 530
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	618
VspI	ATTAAT	1 cut(s)	530
XapI	RAATTY	3 cut(s)	7, 338, 561
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.