RLG00000032216

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003405
Physical Location & Seq
Forward (+)
12145473 .. 12147033
1561 bp
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UTR
Exon/CDS
Intron
RLM00000032216

Sequence Viewer

Length: 405 bp
ATGCGCTGGAGCTCGTCCTCGGGGATGTTGGAGCCGAGGGCCTTGAGGACGTTGACGAGCTCTGAGGTTGAGATCTTGCAGTCACCGTTGGAGTCGAAGCTCTTGAAGACGCGGTGGACCTCGTCGAGTCGTTGGTCACGGCGCAAAGTTCGGGGTCCAGTTCTTACAAAGGCTGACATCCAGGTCACCGTGTACGCTGTTCCTTTCACAACACATAGCTACTCCATGAACCAGAGGCTTGTTGTTTTGGCGAACACTGAGCTTAAGGCAGAGGGAGATGGCTTATATCGTGTCACGGCGTTGGCCCCCCCAATCGGAGCGGTAGCGCCACCAGGATCCTACCTGCTGAATGTGGTTCACCGCAGAATGCCGAGCACGGAAGTGTGGGTGACGATTAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

135

Amino Acids

14.98

Weight (kDa)

10.46

Isoelectric Point (pI)

66.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GO-like_E_set PF09118 55 - 132 1.6e-18 Galactose oxidase-like, Early set domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 320
AccII CGCG 1 cut(s) 112
AciI CCGC 3 cut(s) 112, 320, 361
AclWI GGATC 2 cut(s) 330, 343
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 314
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 2 cut(s) 180, 331
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 5 cut(s) 12, 60, 100, 219, 262
AluI AGCT 5 cut(s) 12, 60, 100, 219, 262
Alw21I GWGCWC 3 cut(s) 14, 62, 377
AlwI GGATC 2 cut(s) 330, 343
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 2 cut(s) 39, 303
AspLEI GCGC 3 cut(s) 6, 144, 328
AspS9I GGNCC 4 cut(s) 39, 117, 155, 304
AsuHPI GGTGA 4 cut(s) 75, 178, 350, 400
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 2 cut(s) 117, 155
BamHI GGATCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 14, 62
BbsI GAAGAC 1 cut(s) 113
Bbv12I GWGCWC 3 cut(s) 14, 62, 377
BccI CCATC 1 cut(s) 272
BceAI ACGGC 2 cut(s) 155, 312
BciT130I CCWGG 2 cut(s) 182, 333
BfoI RGCGCY 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 351
BglII AGATCT 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 182, 333
Bme18I GGWCC 2 cut(s) 117, 155
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 4 cut(s) 39, 117, 155, 304
BmiI GGNNCC 4 cut(s) 33, 156, 306, 337
BmrFI CCNGG 2 cut(s) 182, 333
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 18, 35
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 158, 400
BseBI CCWGG 2 cut(s) 182, 333
BseDI CCNNGG 2 cut(s) 18, 35
BseGI GGATG 2 cut(s) 30, 177
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 2 cut(s) 54, 249
BseNI ACTGG 2 cut(s) 158, 400
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 41, 305
BsiHKAI GWGCWC 3 cut(s) 14, 62, 377
BsiHKCI CYCGRG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 314
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 2 cut(s) 41, 305
BsoBI CYCGRG 1 cut(s) 19
Bsp1286I GDGCHC 3 cut(s) 14, 62, 377
Bsp143I GATC 2 cut(s) 72, 335
BspACI CCGC 3 cut(s) 112, 320, 361
BspANI GGCC 2 cut(s) 41, 305
BspCNI CTCAG 2 cut(s) 55, 250
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 4 cut(s) 33, 156, 306, 337
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 2 cut(s) 330, 343
BspTI CTTAAG 1 cut(s) 263
BsrBI CCGCTC 1 cut(s) 320
BsrI ACTGG 2 cut(s) 158, 400
BssECI CCNNGG 2 cut(s) 18, 35
BssMI GATC 2 cut(s) 72, 335
Bst2UI CCWGG 2 cut(s) 182, 333
Bst4CI ACNGT 2 cut(s) 87, 190
BstAFI CTTAAG 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 63, 258
BstEII GGTNACC 1 cut(s) 184
BstF5I GGATG 2 cut(s) 30, 177
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 3 cut(s) 6, 144, 328
BstKTI GATC 2 cut(s) 75, 338
BstMBI GATC 2 cut(s) 72, 335
BstNI CCWGG 2 cut(s) 182, 333
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 180, 331
BstUI CGCG 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 2 cut(s) 72, 335
BstYI RGATCY 2 cut(s) 72, 335
BsuRI GGCC 2 cut(s) 41, 305
BtsCI GGATG 2 cut(s) 30, 177
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 351
CfoI GCGC 3 cut(s) 6, 144, 328
Cfr13I GGNCC 4 cut(s) 39, 117, 155, 304
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 226
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 63, 258
DpnI GATC 2 cut(s) 74, 337
DpnII GATC 2 cut(s) 72, 335
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Ecl136II GAGCTC 2 cut(s) 12, 60
Eco24I GRGCYC 2 cut(s) 14, 62
Eco47I GGWCC 2 cut(s) 117, 155
Eco53kI GAGCTC 2 cut(s) 12, 60
Eco88I CYCGRG 1 cut(s) 19
Eco91I GGTNACC 1 cut(s) 184
EcoICRI GAGCTC 2 cut(s) 12, 60
EcoO109I RGGNCCY 1 cut(s) 39
EcoO65I GGTNACC 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 180, 331
EcoT38I GRGCYC 2 cut(s) 14, 62
FaeI CATG 1 cut(s) 229
FaiI YATR 3 cut(s) 216, 227, 286
FatI CATG 1 cut(s) 225
FokI GGATG 2 cut(s) 37, 164
FriOI GRGCYC 2 cut(s) 14, 62
GlaI GCGC 3 cut(s) 5, 143, 327
GsuI CTGGAG 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 2 cut(s) 41, 305
HgaI GACGC 1 cut(s) 118
HhaI GCGC 3 cut(s) 6, 144, 328
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 3 cut(s) 4, 142, 326
HinP1I GCGC 3 cut(s) 4, 142, 326
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 2 cut(s) 92, 127
HphI GGTGA 4 cut(s) 75, 178, 350, 400
Hpy166II GTNNAC 4 cut(s) 54, 117, 193, 358
Hpy188I TCNGA 2 cut(s) 64, 317
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 4 cut(s) 54, 117, 193, 358
Hpy99I CGWCG 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 87, 190
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 63, 258
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 3 cut(s) 4, 142, 326
Kzo9I GATC 2 cut(s) 72, 335
LmnI GCTCC 3 cut(s) 9, 31, 317
LpnPI CCDG 7 cut(s) 167, 171, 194, 245, 318, 345, 356
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 5 cut(s) 81, 135, 184, 292, 388
MalI GATC 2 cut(s) 74, 337
MbiI CCGCTC 1 cut(s) 320
MboI GATC 2 cut(s) 72, 335
MboII GAAGA 1 cut(s) 118
MflI RGATCY 2 cut(s) 72, 335
MhlI GDGCHC 3 cut(s) 14, 62, 377
MlyI GAGTC 2 cut(s) 101, 136
MmeI TCCRAC 2 cut(s) 9, 69
MnlI CCTC 7 cut(s) 28, 30, 39, 58, 130, 228, 265
MseI TTAA 2 cut(s) 264, 396
MslI CAYNNNNRTG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 182, 333
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 2 cut(s) 182, 333
MvnI CGCG 1 cut(s) 112
NdeII GATC 2 cut(s) 72, 335
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 4 cut(s) 33, 156, 306, 337
NmeAIII GCCGAG 2 cut(s) 60, 396
NmuCI GTSAC 5 cut(s) 81, 135, 184, 292, 388
OliI CACNNNNGTG 1 cut(s) 380
PctI GAATGC 1 cut(s) 372
PflFI GACNNNGTC 1 cut(s) 121
PleI GAGTC 2 cut(s) 100, 135
PpsI GAGTC 2 cut(s) 100, 135
Psp124BI GAGCTC 2 cut(s) 14, 62
Psp6I CCWGG 2 cut(s) 180, 331
PspEI GGTNACC 1 cut(s) 184
PspGI CCWGG 2 cut(s) 180, 331
PspN4I GGNNCC 4 cut(s) 33, 156, 306, 337
PspPI GGNCC 4 cut(s) 39, 117, 155, 304
PsuI RGATCY 2 cut(s) 72, 335
PsyI GACNNNGTC 1 cut(s) 121
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 2 cut(s) 14, 62
SaqAI TTAA 2 cut(s) 264, 396
Sau3AI GATC 2 cut(s) 72, 335
Sau96I GGNCC 4 cut(s) 39, 117, 155, 304
SchI GAGTC 2 cut(s) 101, 136
ScrFI CCNGG 2 cut(s) 182, 333
SduI GDGCHC 3 cut(s) 14, 62, 377
SinI GGWCC 2 cut(s) 117, 155
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 43, 263
SmoI CTYRAG 2 cut(s) 43, 263
SsiI CCGC 3 cut(s) 112, 320, 361
SstI GAGCTC 2 cut(s) 14, 62
StyD4I CCNGG 2 cut(s) 180, 331
TaaI ACNGT 2 cut(s) 87, 190
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 95, 125
Tru1I TTAA 2 cut(s) 264, 396
Tru9I TTAA 2 cut(s) 264, 396
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 5 cut(s) 81, 135, 184, 292, 388
Tsp45I GTSAC 5 cut(s) 81, 135, 184, 292, 388
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 121
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 117, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.