Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003405

Physical Location & Seq

Genomic Coordinates Forward (+)

28988154 .. 28988595

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG304600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAATCCGCCACTCTCCCTCCAGATCTCAGACTGTCTCAGACTCTCAGAGACTTCCGAGGTCGACCATCACGCACTGGAGCAGAGGAGCAGCGGAGCTCGTCGTCGGGGACGTTGGAGCCCAGGGCCTTGAGGACATTGCCGAGCTCCGAGGTTGAGATCTTGCAGTCGCCGTTGGAGTCGAAGCTCTTGAAGACGCGGTGGACCTCGTCGAGTCGTCGGTCACGACGTGTTTGGACTTTAGAGTCGACGACTGGTGGCAAGTCCTATACTTTGAATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

11.32

Isoelectric Point (pI)

94.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67290 AT5G19580
fragaria_vesca	FvH4_1g05670 FvH4_2g35740
malus_domestica	MD02G1057700.v1.1 MD14G1235700.v1.1 MD15G1094900.v1.1 MD15G1095000.v1.1 MD15G1192100.v1.1
prunus_persica	Prupe.1G450000_v2.0.a1 Prupe.7G225100_v2.0.a1
pyrus_communis	pycom15g08750 pycom15g17200
rosa_chinensis	RchiOBHm_Chr2g0091311 RchiOBHm_Chr6g0306041
rosa_laevigata	RLG00000010829 RLG00000016210 RLG00000032216
rosa_multiflora	Rmu_sc0002270.1_g000045 Rmu_sc0025077.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150220 Rroxscaffold_7G00162100
rosa_rugosa	Rorug02G0016200 Rorug06G0346600
rosa_samantha	Rh2AG061300 Rh2BG060400 Rh2CG062300 Rh2DG060900 Rh2DG061000 Rh6AG458600 Rh6BG442300 Rh6CG473000 Rh6DG459200 Rh7BG304600
rosa_wichuraiana	Rw2G004860 Rw6G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	64, 248
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	9, 94, 199
AdeI	CACNNNGTG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	193, 277
AjiI	CACGTC	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	99, 147, 187
AluI	AGCT	3 cut(s)	99, 147, 187
Alw21I	GWGCWC	2 cut(s)	101, 149
Alw26I	GTCTC	2 cut(s)	42, 45
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	126, 204
AvaII	GGWCC	1 cut(s)	204
BanII	GRGCYC	3 cut(s)	101, 123, 149
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	101, 149
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	42, 45
BglII	AGATCT	2 cut(s)	25, 159
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	126, 204
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	2 cut(s)	6, 99
BpuEI	CTTGAG	1 cut(s)	151
BsaJI	CCNNGG	4 cut(s)	58, 122, 123, 150
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	82, 259
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	4 cut(s)	58, 122, 123, 150
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	3 cut(s)	43, 53, 61
BseNI	ACTGG	2 cut(s)	82, 259
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	2 cut(s)	101, 149
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	42, 45
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	101, 123, 149
Bsp143I	GATC	2 cut(s)	25, 159
BspACI	CCGC	3 cut(s)	9, 94, 199
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	3 cut(s)	42, 52, 60
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	82, 259
BssECI	CCNNGG	4 cut(s)	58, 122, 123, 150
BssMI	GATC	2 cut(s)	25, 159
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	29, 39, 47
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	28, 162
BstMAI	GTCTC	2 cut(s)	42, 45
BstMBI	GATC	2 cut(s)	25, 159
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	122
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	25, 159
BstYI	RGATCY	2 cut(s)	25, 159
BsuRI	GGCC	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	126, 204
CseI	GACGC	1 cut(s)	205
CviJI	RGCY	5 cut(s)	99, 121, 128, 147, 187
CviKI_1	RGCY	5 cut(s)	99, 121, 128, 147, 187
DdeI	CTNAG	3 cut(s)	29, 39, 47
DpnI	GATC	2 cut(s)	27, 161
DpnII	GATC	2 cut(s)	25, 159
DraIII	CACNNNGTG	1 cut(s)	230
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
Ecl136II	GAGCTC	2 cut(s)	99, 147
Eco24I	GRGCYC	3 cut(s)	101, 123, 149
Eco47I	GGWCC	1 cut(s)	204
Eco53kI	GAGCTC	2 cut(s)	99, 147
EcoICRI	GAGCTC	2 cut(s)	99, 147
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	122
EcoT38I	GRGCYC	3 cut(s)	101, 123, 149
FaiI	YATR	1 cut(s)	270
FaqI	GGGAC	1 cut(s)	124
FblI	GTMKAC	2 cut(s)	64, 248
Fnu4HI	GCNGC	1 cut(s)	92
FriOI	GRGCYC	3 cut(s)	101, 123, 149
Fsp4HI	GCNGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	2 cut(s)	6, 99
HaeIII	GGCC	1 cut(s)	128
HgaI	GACGC	1 cut(s)	205
HincII	GTYRAC	2 cut(s)	65, 249
HindII	GTYRAC	2 cut(s)	65, 249
HinfI	GANTC	5 cut(s)	43, 179, 214, 245, 277
Hpy166II	GTNNAC	3 cut(s)	65, 204, 249
Hpy188I	TCNGA	5 cut(s)	32, 42, 50, 59, 151
Hpy188III	TCNNGA	3 cut(s)	23, 190, 225
Hpy8I	GTNNAC	3 cut(s)	65, 204, 249
Hpy99I	CGWCG	6 cut(s)	106, 109, 214, 222, 231, 253
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	113, 229
HpyCH4V	TGCA	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	29, 39, 47
HpySE526I	ACGT	2 cut(s)	113, 229
Kzo9I	GATC	2 cut(s)	25, 159
LmnI	GCTCC	5 cut(s)	80, 88, 96, 118, 152
LpnPI	CCDG	5 cut(s)	36, 63, 109, 136, 240
Lsp1109I	GCAGC	1 cut(s)	103
MaeII	ACGT	2 cut(s)	113, 229
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	2 cut(s)	27, 161
MboI	GATC	2 cut(s)	25, 159
MboII	GAAGA	1 cut(s)	205
MflI	RGATCY	2 cut(s)	25, 159
MhlI	GDGCHC	3 cut(s)	101, 123, 149
MlyI	GAGTC	4 cut(s)	37, 188, 223, 254
MmeI	TCCRAC	2 cut(s)	96, 156
MnlI	CCTC	6 cut(s)	30, 53, 79, 126, 145, 217
MspA1I	CMGCKG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	199
NdeII	GATC	2 cut(s)	25, 159
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	222
PasI	CCCWGGG	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	3 cut(s)	110, 223, 226
PfeI	GAWTC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	4 cut(s)	37, 187, 222, 253
PpsI	GAGTC	4 cut(s)	37, 187, 222, 253
Psp124BI	GAGCTC	2 cut(s)	101, 149
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	126, 204
PsuI	RGATCY	2 cut(s)	25, 159
PsyI	GACNNNGTC	1 cut(s)	208
SacI	GAGCTC	2 cut(s)	101, 149
SalI	GTCGAC	2 cut(s)	63, 247
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	25, 159
Sau96I	GGNCC	2 cut(s)	126, 204
SchI	GAGTC	4 cut(s)	37, 188, 223, 254
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	3 cut(s)	101, 123, 149
SetI	ASST	8 cut(s)	64, 101, 116, 149, 156, 189, 209, 232
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SsiI	CCGC	3 cut(s)	9, 94, 199
SstI	GAGCTC	2 cut(s)	101, 149
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	2 cut(s)	116, 232
TaqI	TCGA	4 cut(s)	64, 182, 212, 248
TaqII	GACCGA	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	277
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	222
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	204
XmiI	GTMKAC	2 cut(s)	64, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.