Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Forward (+)

3066785 .. 3071564

Gene Structure 4780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1044900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGTTATCTCAATTCAGTTTTGTCAGCTTCAACCCAGGTCCATGCTGACGATCCACCCGTTAGCGGCGGCGGCCTCAGTCAGAATGGAAAGTTCAGCTATGGATATGCAAGCTCTCCAGGGAAAAGATCTTCTATGGAAGACTTTTATGAGACAAGAATTGATGGTGTCGAGGGAGAAGTAGTTGGTCTTTTTGGAGTTTTCGATGGCCATGGAGGTGCACGTGCTGCTGAGTATGTCAAGCAAAATCTTTTCAGTAATTTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCTATAGCTGATGCTTACAGCCATACGGACTCTGAATTTCTGAAATCAGAAAATAATCAGAATAGAGATGCTGGGTCAACTGCTTCTACTGCGATCTTAGTTGGTGACCGTTTGCTTGTTGCAAATGTTGGTGATTCCAGAGCTGTGATATGCAGGGGTGGGAGCGCTATAGCTGTTTCAAGAGATCACAAGCCAGACCAGACTGATGAGCGGCAACGGATTGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTCGCTGTTTCTCGTGCATTTGGTGATAGGCTGTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAACTCTCTTGAGTTCCTTATCCTTGCTAGTGATGGACTGTGGGATGTTGTCACCAATGAGGAGGCCGTAGCAATGATCAAACCAATTCAGGATCCAAAGCAGGCAGCGGAGAGGCTAATGCAGGAAGCGTATCAGAGGGGGAGTGCAGATAACATCACGTGTGTTGTTGTTCGTTTCCTGGCTAACCAAGGGGGCTCCTCACGAAGCAGTTCCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

293

Amino Acids

31.42

Weight (kDa)

5.04

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	62 - 272	1.7e-66	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	511
AciI	CCGC	5 cut(s)	66, 69, 72, 511, 767
AclWI	GGATC	4 cut(s)	47, 626, 746, 759
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	278, 335
AcvI	CACGTG	2 cut(s)	224, 819
AfeI	AGCGCT	1 cut(s)	466
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	818
AgsI	TTSAA	3 cut(s)	33, 480, 613
AjnI	CCWGG	4 cut(s)	36, 118, 642, 837
AluBI	AGCT	6 cut(s)	29, 99, 114, 308, 443, 473
AluI	AGCT	6 cut(s)	29, 99, 114, 308, 443, 473
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	4 cut(s)	47, 626, 746, 759
Aor51HI	AGCGCT	1 cut(s)	466
AoxI	GGCC	3 cut(s)	73, 208, 723
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	227, 764
ApoI	RAATTY	2 cut(s)	278, 335
Asp700I	GAANNNNTTC	1 cut(s)	868
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	4 cut(s)	416, 443, 611, 703
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	857
BauI	CACGAG	1 cut(s)	588
BbrPI	CACGTG	2 cut(s)	224, 819
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	214, 776
BccI	CCATC	3 cut(s)	158, 200, 686
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	4 cut(s)	38, 120, 644, 839
BclI	TGATCA	1 cut(s)	735
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	2 cut(s)	303, 468
BfoI	RGCGCY	1 cut(s)	468
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	6 cut(s)	67, 70, 73, 228, 512, 765
BlsI	GCNGC	6 cut(s)	68, 71, 74, 229, 513, 766
Bme1390I	CCNGG	4 cut(s)	38, 120, 644, 839
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	753, 856
BmrFI	CCNGG	4 cut(s)	38, 120, 644, 839
BmsI	GCATC	4 cut(s)	280, 301, 358, 517
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	561, 593
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	689
BsaAI	YACGTR	2 cut(s)	224, 819
BsaJI	CCNNGG	4 cut(s)	36, 119, 211, 847
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	4 cut(s)	38, 120, 644, 839
BseDI	CCNNGG	4 cut(s)	36, 119, 211, 847
BseGI	GGATG	3 cut(s)	271, 532, 709
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	91, 222
BseRI	GAGGAG	2 cut(s)	734, 847
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	214, 776
BseYI	CCCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	3 cut(s)	75, 210, 725
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	873
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	75, 210, 725
Bsp1286I	GDGCHC	2 cut(s)	223, 857
Bsp143I	GATC	7 cut(s)	52, 128, 393, 484, 631, 735, 751
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	5 cut(s)	66, 69, 72, 511, 767
BspANI	GGCC	3 cut(s)	75, 210, 725
BspCNI	CTCAG	2 cut(s)	90, 223
BspLI	GGNNCC	2 cut(s)	753, 856
BspPI	GGATC	4 cut(s)	47, 626, 746, 759
BsrBI	CCGCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	738
BssECI	CCNNGG	4 cut(s)	36, 119, 211, 847
BssMI	GATC	7 cut(s)	52, 128, 393, 484, 631, 735, 751
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	2 cut(s)	211, 847
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	4 cut(s)	38, 120, 644, 839
Bst4CI	ACNGT	2 cut(s)	410, 699
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBAI	YACGTR	2 cut(s)	224, 819
BstC8I	GCNNGC	2 cut(s)	112, 762
BstDEI	CTNAG	3 cut(s)	77, 231, 397
BstDSI	CCRYGG	1 cut(s)	211
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	271, 532, 709
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	7 cut(s)	55, 131, 396, 487, 634, 738, 754
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	7 cut(s)	52, 128, 393, 484, 631, 735, 751
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 227, 389, 613, 873
BstNI	CCWGG	4 cut(s)	38, 120, 644, 839
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	4 cut(s)	36, 118, 642, 837
BstSFI	CTRYAG	2 cut(s)	303, 468
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	214, 776
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	128, 751
BstYI	RGATCY	2 cut(s)	128, 751
BsuRI	GGCC	3 cut(s)	75, 210, 725
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	271, 532, 709
Cac8I	GCNNGC	2 cut(s)	112, 762
CfoI	GCGC	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	40
CviAII	CATG	2 cut(s)	44, 212
DdeI	CTNAG	3 cut(s)	77, 231, 397
DpnI	GATC	7 cut(s)	54, 130, 395, 486, 633, 737, 753
DpnII	GATC	7 cut(s)	52, 128, 393, 484, 631, 735, 751
EaeI	YGGCCR	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	211, 847
Eco24I	GRGCYC	1 cut(s)	857
Eco47I	GGWCC	1 cut(s)	40
Eco47III	AGCGCT	1 cut(s)	466
Eco72I	CACGTG	2 cut(s)	224, 819
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	4 cut(s)	36, 118, 642, 837
EcoT14I	CCWWGG	2 cut(s)	211, 847
EcoT38I	GRGCYC	1 cut(s)	857
ErhI	CCWWGG	2 cut(s)	211, 847
FaeI	CATG	2 cut(s)	47, 215
FatI	CATG	2 cut(s)	43, 211
FbaI	TGATCA	1 cut(s)	735
Fnu4HI	GCNGC	6 cut(s)	67, 70, 73, 228, 512, 765
FokI	GGATG	3 cut(s)	258, 539, 716
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	6 cut(s)	67, 70, 73, 228, 512, 765
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	6 cut(s)	67, 70, 73, 228, 512, 765
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	75, 210, 725
HapII	CCGG	1 cut(s)	873
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	2 cut(s)	47, 215
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	329, 434
HpaII	CCGG	1 cut(s)	873
HphI	GGTGA	4 cut(s)	416, 443, 611, 703
Hpy166II	GTNNAC	2 cut(s)	221, 378
Hpy188I	TCNGA	7 cut(s)	84, 289, 334, 342, 349, 360, 795
Hpy188III	TCNNGA	6 cut(s)	438, 480, 635, 668, 749, 861
Hpy8I	GTNNAC	2 cut(s)	221, 378
HpyCH4III	ACNGT	2 cut(s)	410, 699
HpyCH4IV	ACGT	2 cut(s)	223, 818
HpyCH4V	TGCA	8 cut(s)	110, 221, 422, 453, 530, 593, 781, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 227, 389, 613, 873
HpyF3I	CTNAG	3 cut(s)	77, 231, 397
HpySE526I	ACGT	2 cut(s)	223, 818
Hsp92II	CATG	2 cut(s)	47, 215
HspAI	GCGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	735
Kzo9I	GATC	7 cut(s)	52, 128, 393, 484, 631, 735, 751
LmnI	GCTCC	2 cut(s)	462, 860
Lsp1109I	GCAGC	2 cut(s)	214, 776
LweI	GCATC	4 cut(s)	280, 301, 358, 517
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	2 cut(s)	223, 818
MaeIII	GTNAC	2 cut(s)	404, 709
MalI	GATC	7 cut(s)	54, 130, 395, 486, 633, 737, 753
MbiI	CCGCTC	1 cut(s)	511
MboI	GATC	7 cut(s)	52, 128, 393, 484, 631, 735, 751
MboII	GAAGA	2 cut(s)	123, 152
MflI	RGATCY	2 cut(s)	128, 751
MhlI	GDGCHC	2 cut(s)	223, 857
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	6 cut(s)	13, 159, 259, 278, 335, 744
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	547
Mox20I	TGGCCA	1 cut(s)	210
MroXI	GAANNNNTTC	1 cut(s)	868
MscI	TGGCCA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	1 cut(s)	873
MspR9I	CCNGG	4 cut(s)	38, 120, 644, 839
MvaI	CCWGG	4 cut(s)	38, 120, 644, 839
MwoI	GCNNNNNNNGC	5 cut(s)	72, 227, 389, 613, 873
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	7 cut(s)	52, 128, 393, 484, 631, 735, 751
NlaIII	CATG	2 cut(s)	47, 215
NlaIV	GGNNCC	2 cut(s)	753, 856
NmuCI	GTSAC	2 cut(s)	404, 709
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	642
PkrI	GCNGC	6 cut(s)	68, 71, 74, 229, 513, 766
PleI	GAGTC	1 cut(s)	323
PmaCI	CACGTG	2 cut(s)	224, 819
PmlI	CACGTG	2 cut(s)	224, 819
PpsI	GAGTC	1 cut(s)	323
Ppu21I	YACGTR	2 cut(s)	224, 819
Psp6I	CCWGG	4 cut(s)	36, 118, 642, 837
PspCI	CACGTG	2 cut(s)	224, 819
PspEI	GGTNACC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	4 cut(s)	36, 118, 642, 837
PspN4I	GGNNCC	2 cut(s)	753, 856
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	128, 751
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	6 cut(s)	67, 70, 73, 228, 512, 765
Sau3AI	GATC	7 cut(s)	52, 128, 393, 484, 631, 735, 751
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	4 cut(s)	38, 120, 644, 839
SduI	GDGCHC	2 cut(s)	223, 857
SfaNI	GCATC	4 cut(s)	280, 301, 358, 517
SfcI	CTRYAG	2 cut(s)	303, 468
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	6 cut(s)	13, 159, 259, 278, 335, 744
SsiI	CCGC	5 cut(s)	66, 69, 72, 511, 767
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	4 cut(s)	36, 118, 642, 837
StyI	CCWWGG	2 cut(s)	211, 847
TaaI	ACNGT	2 cut(s)	410, 699
TaiI	ACGT	2 cut(s)	226, 821
TaqI	TCGA	2 cut(s)	171, 204
TasI	AATT	6 cut(s)	13, 159, 259, 278, 335, 744
TauI	GCSGC	4 cut(s)	69, 72, 75, 514
TfiI	GAWTC	1 cut(s)	434
TseFI	GTSAC	2 cut(s)	404, 709
TseI	GCWGC	2 cut(s)	227, 764
Tsp45I	GTSAC	2 cut(s)	404, 709
TspGWI	ACGGA	2 cut(s)	341, 532
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	278, 335
XmnI	GAANNNNTTC	1 cut(s)	868
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.