Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000981.1

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Reverse (-)

37321 .. 40776

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000981.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgggttatctcaattccgttttgtcatcttcaagccaggttcatgctgacgacgcacccgtaagcggtggtggcctcagtcagaatggaaagttcagctatggatatgcaagttctccgggaaaaagatcttctatggaagatttttatgagacaagaatcgatggtgttgagggagaaatagttggtctcttcggagtttttgatggtcatgggggtgcacgtgctgctgaatatgtcaagcaaaatctgtttagtaatttgatcaggcatccaaagtttatttctgacaccaaatctgccatagctgatgcatacagccatacagactctgaattcctgaagtcagaaaataaccagaatagagatgctgggtcaaccgcttccactgctatcctagttggtgatcgtttgcttgtcgcaaacgttggggattccagagcagtgatatgcaggggtggtaatgcaatagctgtttcaagagatcacaagccggaccaaactgatgagcggcaacggattgaggatgcaggaggatttgtaatgtgggcgggaacttggagagttggaggtgttcttgctgtttctcgtgcatttggagataggctgttgaagcagtatgttgttgctgatccagaaatccaggaggaaaagattgacaacagtcttgagtttcttatccttgcaagtgatggactgtgggatgttgtcaccaatgaggaagccgttgcaatgatcaaaccaattcaggacccaaaacaggcatcagagaggctaatgcaggaagcatatcagagaggaagtgctgataatattacttgcgttgttgtccgtttcttggctaatccaggcggttcatcacgaagcagttctggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

292

Amino Acids

31.42

Weight (kDa)

5.04

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	511
AciI	CCGC	5 cut(s)	66, 381, 511, 551, 852
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	1 cut(s)	626
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	362
AcvI	CACGTG	1 cut(s)	224
AfiI	CCNNNNNNNGG	3 cut(s)	65, 760, 838
AgsI	TTSAA	3 cut(s)	33, 480, 613
AjnI	CCWGG	3 cut(s)	36, 642, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	268, 300
AluBI	AGCT	3 cut(s)	99, 308, 473
AluI	AGCT	3 cut(s)	99, 308, 473
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	146, 194
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	626
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	868
AspS9I	GGNCC	2 cut(s)	496, 751
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	416, 703
AvaII	GGWCC	2 cut(s)	496, 751
BaeGI	GKGCMC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	588
BbrPI	CACGTG	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	158, 200, 686
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	3 cut(s)	38, 644, 849
BclI	TGATCA	2 cut(s)	264, 735
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	146, 194
BfaI	CTAG	1 cut(s)	398
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	2 cut(s)	228, 512
BlsI	GCNGC	2 cut(s)	229, 513
Bme1390I	CCNGG	4 cut(s)	38, 120, 644, 849
Bme18I	GGWCC	2 cut(s)	496, 751
BmgT120I	GGNCC	2 cut(s)	496, 751
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	4 cut(s)	38, 120, 644, 849
BmsI	GCATC	5 cut(s)	280, 301, 358, 517, 773
BoxI	GACNNNNGTC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	194
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 525, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 760, 838
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	3 cut(s)	38, 644, 849
BseCI	ATCGAT	1 cut(s)	162
BseGI	GGATG	3 cut(s)	271, 532, 709
BseLI	CCNNNNNNNGG	3 cut(s)	65, 760, 838
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	1 cut(s)	75
BshVI	ATCGAT	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	119, 494
BslI	CCNNNNNNNGG	3 cut(s)	65, 760, 838
BsmAI	GTCTC	2 cut(s)	146, 194
BsnI	GGCC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	6 cut(s)	128, 264, 406, 484, 631, 735
BspACI	CCGC	5 cut(s)	66, 381, 511, 551, 852
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	738
BssMI	GATC	6 cut(s)	128, 264, 406, 484, 631, 735
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	3 cut(s)	38, 644, 849
Bst4CI	ACNGT	2 cut(s)	665, 699
Bst6I	CTCTTC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	271, 532, 709
BstKTI	GATC	6 cut(s)	131, 267, 409, 487, 634, 738
BstMAI	GTCTC	2 cut(s)	146, 194
BstMBI	GATC	6 cut(s)	128, 264, 406, 484, 631, 735
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 72, 227, 389, 613, 873
BstNI	CCWGG	3 cut(s)	38, 644, 849
BstPAI	GACNNNNGTC	1 cut(s)	663
BstSCI	CCNGG	4 cut(s)	36, 118, 642, 847
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	271, 532, 709
BtsI	GCAGTG	2 cut(s)	387, 450
BtsIMutI	CAGTG	2 cut(s)	387, 450
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	496, 751
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	1 cut(s)	62
CviAII	CATG	2 cut(s)	44, 212
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	6 cut(s)	130, 266, 408, 486, 633, 737
DpnII	GATC	6 cut(s)	128, 264, 406, 484, 631, 735
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	496, 751
Eco57I	CTGAAG	1 cut(s)	362
Eco72I	CACGTG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	3 cut(s)	36, 642, 847
EcoT22I	ATGCAT	1 cut(s)	316
FaeI	CATG	2 cut(s)	47, 215
FatI	CATG	2 cut(s)	43, 211
FauI	CCCGC	1 cut(s)	544
FbaI	TGATCA	2 cut(s)	264, 735
Fnu4HI	GCNGC	2 cut(s)	228, 512
FokI	GGATG	3 cut(s)	258, 539, 716
Fsp4HI	GCNGC	2 cut(s)	228, 512
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	2 cut(s)	228, 512
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	119, 494
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	47, 215
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	159, 329, 434
HpaII	CCGG	2 cut(s)	119, 494
HphI	GGTGA	2 cut(s)	416, 703
Hpy166II	GTNNAC	2 cut(s)	221, 378
Hpy188I	TCNGA	7 cut(s)	84, 197, 289, 334, 349, 769, 795
Hpy188III	TCNNGA	7 cut(s)	340, 438, 480, 635, 668, 749, 861
Hpy8I	GTNNAC	2 cut(s)	221, 378
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	665, 699
HpyCH4IV	ACGT	2 cut(s)	223, 426
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 72, 227, 389, 613, 873
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	2 cut(s)	223, 426
Hsp92II	CATG	2 cut(s)	47, 215
Ksp22I	TGATCA	2 cut(s)	264, 735
Kzo9I	GATC	6 cut(s)	128, 264, 406, 484, 631, 735
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	5 cut(s)	280, 301, 358, 517, 773
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	223, 426
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	6 cut(s)	130, 266, 408, 486, 633, 737
MbiI	CCGCTC	1 cut(s)	511
MboI	GATC	6 cut(s)	128, 264, 406, 484, 631, 735
MboII	GAAGA	4 cut(s)	21, 123, 152, 184
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	13, 259, 335, 744
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	9 cut(s)	86, 166, 517, 527, 563, 640, 712, 765, 791
Mph1103I	ATGCAT	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	868
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	2 cut(s)	119, 494
MspR9I	CCNGG	4 cut(s)	38, 120, 644, 849
MvaI	CCWGG	3 cut(s)	38, 644, 849
MwoI	GCNNNNNNNGC	6 cut(s)	53, 72, 227, 389, 613, 873
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	6 cut(s)	128, 264, 406, 484, 631, 735
NlaIII	CATG	2 cut(s)	47, 215
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	709
NsiI	ATGCAT	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	2 cut(s)	159, 434
PfoI	TCCNGGA	2 cut(s)	118, 642
PkrI	GCNGC	2 cut(s)	229, 513
PleI	GAGTC	1 cut(s)	323
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	323
Ppu21I	YACGTR	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	751
PshAI	GACNNNNGTC	1 cut(s)	663
Psp1406I	AACGTT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	3 cut(s)	36, 642, 847
PspCI	CACGTG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	3 cut(s)	36, 642, 847
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	496, 751
PspPPI	RGGWCCY	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	2 cut(s)	228, 512
Sau3AI	GATC	6 cut(s)	128, 264, 406, 484, 631, 735
Sau96I	GGNCC	2 cut(s)	496, 751
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	4 cut(s)	38, 120, 644, 849
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	7 cut(s)	42, 101, 226, 310, 429, 475, 574
SfaNI	GCATC	5 cut(s)	280, 301, 358, 517, 773
SinI	GGWCC	2 cut(s)	496, 751
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	4 cut(s)	13, 259, 335, 744
SsiI	CCGC	5 cut(s)	66, 381, 511, 551, 852
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	4 cut(s)	36, 118, 642, 847
TaaI	ACNGT	2 cut(s)	665, 699
TaiI	ACGT	2 cut(s)	226, 429
TaqI	TCGA	1 cut(s)	162
TasI	AATT	4 cut(s)	13, 259, 335, 744
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	2 cut(s)	159, 434
TscAI	CASTG	2 cut(s)	394, 450
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	2 cut(s)	32, 846
TspGWI	ACGGA	3 cut(s)	7, 532, 821
TspRI	CASTG	2 cut(s)	394, 450
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	2 cut(s)	496, 751
XapI	RAATTY	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	868
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.