Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Reverse (-)

59526672 .. 59531031

Gene Structure 4360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG396000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAAGATTTTTATGAGACAAGAATCGATGGTGTTGAGGGAGAAATAGTTGGTCTCTTCGGAGTTTTTGATGGTCATGGGGGTGCACGTGCTGCTGAATATGTCAAGCAAAATCTGTTTAGTAATTTGATCAGGCATCCAAAGTTTATTTCTGACACCAAATCTGCCATAGCTGATGCATACAGCCATACAGACTCTGAATTCCTGAAGTCAGAAAATAACCAGAATAGAGATGCTGGGTCAACCGCTTCCACTGCTATCCTAGTTGGTGATCGTTTGCTTGTCGCAAACGTTGGGGATTCCAGAGCAGTGATATGCAGGGGTGGTAATGCAATAGCTGTTTCAAGAGATCACAAGCCGGACCAAACTGATGAGCGGCAACGGATTGAGGATGCTGGAGGATTTGTAATGTGGGCAGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGAGATAGGCTGTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAACAGTCTTGAGTTTCTTATCCTTGCAAGTGATGGACTGTGGGATGTTGTCACCAATGAGGAAGCCGTTGCAATGATTAAACCAATTCAGGACCCAAAACAGGCATCAGAGAGGCTAATGCAGGAAGCATATCAGAGAGGAAGTGCTGATAATATTACTTGCGTTGTTGTCCGTTTCTTGGCTAATCCAGGCGGTTCATCACGAAGCAGTTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

247

Amino Acids

26.9

Weight (kDa)

4.87

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	18 - 227	1e-66	Protein phosphatase 2C
PP2C_2	PF13672	31 - 209	1e-05	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	376
AciI	CCGC	3 cut(s)	246, 376, 717
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	227
AcvI	CACGTG	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	625, 703
AgsI	TTSAA	2 cut(s)	345, 478
AjnI	CCWGG	2 cut(s)	507, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	2 cut(s)	173, 338
AluI	AGCT	2 cut(s)	173, 338
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	11, 59
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	197
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	361, 616
AsuHPI	GGTGA	2 cut(s)	281, 568
AvaII	GGWCC	2 cut(s)	361, 616
BaeGI	GKGCMC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	453
BbrPI	CACGTG	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	3 cut(s)	23, 65, 551
BceAI	ACGGC	1 cut(s)	575
BciT130I	CCWGG	2 cut(s)	509, 714
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	11, 59
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	2 cut(s)	93, 377
BlsI	GCNGC	2 cut(s)	94, 378
Bme1390I	CCNGG	2 cut(s)	509, 714
Bme18I	GGWCC	2 cut(s)	361, 616
BmgT120I	GGNCC	2 cut(s)	361, 616
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	2 cut(s)	509, 714
BmsI	GCATC	5 cut(s)	145, 166, 223, 382, 638
BoxI	GACNNNNGTC	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	554
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	59
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 390, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	625, 703
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	509, 714
BseCI	ATCGAT	1 cut(s)	27
BseGI	GGATG	3 cut(s)	136, 397, 574
BseLI	CCNNNNNNNGG	2 cut(s)	625, 703
BseMI	GCAATG	1 cut(s)	603
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	625, 703
BsmAI	GTCTC	2 cut(s)	11, 59
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	129, 271, 349, 496
BspACI	CCGC	3 cut(s)	246, 376, 717
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	618
BspPI	GGATC	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	603
BssMI	GATC	4 cut(s)	129, 271, 349, 496
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	2 cut(s)	509, 714
Bst4CI	ACNGT	2 cut(s)	530, 564
Bst6I	CTCTTC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	89
BstF5I	GGATG	3 cut(s)	136, 397, 574
BstKTI	GATC	4 cut(s)	132, 274, 352, 499
BstMAI	GTCTC	2 cut(s)	11, 59
BstMBI	GATC	4 cut(s)	129, 271, 349, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 254, 478, 738
BstNI	CCWGG	2 cut(s)	509, 714
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	507, 712
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	136, 397, 574
BtsI	GCAGTG	2 cut(s)	252, 315
BtsIMutI	CAGTG	2 cut(s)	252, 315
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	361, 616
ClaI	ATCGAT	1 cut(s)	27
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	9 cut(s)	173, 186, 338, 358, 472, 590, 640, 707, 741
CviKI_1	RGCY	9 cut(s)	173, 186, 338, 358, 472, 590, 640, 707, 741
DpnI	GATC	4 cut(s)	131, 273, 351, 498
DpnII	GATC	4 cut(s)	129, 271, 349, 496
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	361, 616
Eco57I	CTGAAG	1 cut(s)	227
Eco72I	CACGTG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	507, 712
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	1 cut(s)	80
FaiI	YATR	9 cut(s)	15, 78, 102, 170, 181, 189, 316, 486, 655
FatI	CATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	93, 377
FokI	GGATG	3 cut(s)	123, 404, 581
Fsp4HI	GCNGC	2 cut(s)	93, 377
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	2 cut(s)	93, 377
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	417
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	24, 194, 299
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	281, 568
Hpy166II	GTNNAC	2 cut(s)	86, 243
Hpy188I	TCNGA	6 cut(s)	62, 154, 199, 214, 634, 660
Hpy188III	TCNNGA	7 cut(s)	205, 303, 345, 500, 533, 614, 726
Hpy8I	GTNNAC	2 cut(s)	86, 243
HpyCH4III	ACNGT	2 cut(s)	530, 564
HpyCH4IV	ACGT	2 cut(s)	88, 291
HpyCH4V	TGCA	8 cut(s)	86, 179, 318, 332, 458, 551, 596, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 254, 478, 738
HpySE526I	ACGT	2 cut(s)	88, 291
Hsp92II	CATG	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	129, 271, 349, 496
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	5 cut(s)	145, 166, 223, 382, 638
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	2 cut(s)	88, 291
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	4 cut(s)	131, 273, 351, 498
MbiI	CCGCTC	1 cut(s)	376
MboI	GATC	4 cut(s)	129, 271, 349, 496
MboII	GAAGA	2 cut(s)	17, 49
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	3 cut(s)	124, 200, 609
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	31, 382, 392, 428, 505, 577, 630, 656
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	733
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	509, 714
MvaI	CCWGG	2 cut(s)	509, 714
MwoI	GCNNNNNNNGC	4 cut(s)	92, 254, 478, 738
NdeII	GATC	4 cut(s)	129, 271, 349, 496
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	24, 299
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	2 cut(s)	94, 378
PleI	GAGTC	1 cut(s)	188
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	616
PshAI	GACNNNNGTC	1 cut(s)	528
Psp1406I	AACGTT	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	507, 712
PspCI	CACGTG	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	2 cut(s)	507, 712
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	2 cut(s)	361, 616
PspPPI	RGGWCCY	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	2 cut(s)	93, 377
Sau3AI	GATC	4 cut(s)	129, 271, 349, 496
Sau96I	GGNCC	2 cut(s)	361, 616
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	509, 714
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	91, 175, 294, 340, 439
SfaNI	GCATC	5 cut(s)	145, 166, 223, 382, 638
SinI	GGWCC	2 cut(s)	361, 616
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	3 cut(s)	124, 200, 609
SsiI	CCGC	3 cut(s)	246, 376, 717
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	507, 712
TaaI	ACNGT	2 cut(s)	530, 564
TaiI	ACGT	2 cut(s)	91, 294
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	124, 200, 609
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	24, 299
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	259, 315
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	1 cut(s)	711
TspGWI	ACGGA	2 cut(s)	397, 686
TspRI	CASTG	2 cut(s)	259, 315
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	361, 616
XapI	RAATTY	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	733
XspI	CTAG	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.