Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Reverse (-)

59661225 .. 59664830

Gene Structure 3606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG410600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAAATCAGAGATGATCCTTAGCAATAACATGGGTTATCTCAATTCCGTTTTGTCATCTTCAAGCCAGGTTCATGCTGACGACGCACCCGTAAGCGGTGGTGGCCTCAGTCAGAATGGAAAGTTCAGCTATGGATATGCAAGTTCTCCGGGAAAAAGATCTTCTATGGAAGATTTTTATGAGACAAGAATCGATGGTGTTGAGGGAGAAATAGTTGGTCTCTTCGGAGTTTTTGATGGTCATGGTGGTGCACGTGCTGCGGAATATGTCAAGCAAAATCTGTTTAGTAATTTGATCAGGCATCCAAAGTTTATTTCTGACACCAAATCTGCCATAGCTGATGCATACAGCCATACAGACTCTGAATTCCTGAAGTCAGAAAATAACCAGAATAGAGATGCTGGGTCAACCGCTTCCACTGCTATCCTAGTTGGTGACCGTTTGCTTGTCGCAAACGTTGGGGATTCCAGAGCAGTGATATGCAGGGGTGGTAATGCAATAGCTGTTTCAAGAGATCACAAGCCGGACCAAACTGATGAGCGGCAACGGATTGAGGATGCAGGAGGATTTGTAATGTGGGCAGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGAGATAGGCTGTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAACAGTCTTGAGTTTCTTATCCTTGCAAGTGATGGACTGTGGGATGTTGTCACCAATGAGGAAGCCGTTGCAATGATCAAACCAATTCAGGACCCAAAACAGGCATCAGAGAGGCTAATGCAGGAAGCATATCAGAGAGGAAGTGCTGATAATATTACTTGTGTTGTTGTCCGTTTCTTGGCTAATCCAGGCGGTTCATCACGAAGCAGTTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

302

Amino Acids

32.57

Weight (kDa)

5.06

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	72 - 282	1.2e-66	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	541
AciI	CCGC	5 cut(s)	96, 260, 411, 541, 882
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	2 cut(s)	10, 656
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	392
AcvI	CACGTG	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	95, 790, 868
AgsI	TTSAA	3 cut(s)	63, 510, 643
AjnI	CCWGG	3 cut(s)	66, 672, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	3 cut(s)	129, 338, 503
AluI	AGCT	3 cut(s)	129, 338, 503
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	176, 224
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	10, 656
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	898
AspS9I	GGNCC	2 cut(s)	526, 781
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	446, 733
AvaII	GGWCC	2 cut(s)	526, 781
BaeGI	GKGCMC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	618
BbrPI	CACGTG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	3 cut(s)	188, 230, 716
BceAI	ACGGC	1 cut(s)	740
BciT130I	CCWGG	3 cut(s)	68, 674, 879
BclI	TGATCA	2 cut(s)	294, 765
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	176, 224
BfaI	CTAG	1 cut(s)	428
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	2 cut(s)	258, 542
BlsI	GCNGC	2 cut(s)	259, 543
Bme1390I	CCNGG	4 cut(s)	68, 150, 674, 879
Bme18I	GGWCC	2 cut(s)	526, 781
BmgT120I	GGNCC	2 cut(s)	526, 781
BmiI	GGNNCC	1 cut(s)	783
BmrFI	CCNGG	4 cut(s)	68, 150, 674, 879
BmsI	GCATC	5 cut(s)	310, 331, 388, 547, 803
BoxI	GACNNNNGTC	1 cut(s)	693
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	224
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 790, 868
Bse3DI	GCAATG	1 cut(s)	768
BseBI	CCWGG	3 cut(s)	68, 674, 879
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	3 cut(s)	301, 562, 739
BseLI	CCNNNNNNNGG	3 cut(s)	95, 790, 868
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	401
BshFI	GGCC	1 cut(s)	105
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	149, 524
BslI	CCNNNNNNNGG	3 cut(s)	95, 790, 868
BsmAI	GTCTC	2 cut(s)	176, 224
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	6 cut(s)	15, 158, 294, 514, 661, 765
BspACI	CCGC	5 cut(s)	96, 260, 411, 541, 882
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	783
BspPI	GGATC	2 cut(s)	10, 656
BspTNI	GGTCTC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	768
BssMI	GATC	6 cut(s)	15, 158, 294, 514, 661, 765
BssSI	CACGAG	1 cut(s)	618
Bst2BI	CACGAG	1 cut(s)	618
Bst2UI	CCWGG	3 cut(s)	68, 674, 879
Bst4CI	ACNGT	3 cut(s)	440, 695, 729
Bst6I	CTCTTC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstBAI	YACGTR	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	20, 107
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	3 cut(s)	301, 562, 739
BstKTI	GATC	6 cut(s)	18, 161, 297, 517, 664, 768
BstMAI	GTCTC	2 cut(s)	176, 224
BstMBI	GATC	6 cut(s)	15, 158, 294, 514, 661, 765
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 102, 257, 419, 643, 903
BstNI	CCWGG	3 cut(s)	68, 674, 879
BstPAI	GACNNNNGTC	1 cut(s)	693
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	4 cut(s)	66, 148, 672, 877
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	301, 562, 739
BtsI	GCAGTG	2 cut(s)	417, 480
BtsIMutI	CAGTG	2 cut(s)	417, 480
CaiI	CAGNNNCTG	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	526, 781
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	1 cut(s)	92
CviAII	CATG	3 cut(s)	31, 74, 242
DdeI	CTNAG	2 cut(s)	20, 107
DpnI	GATC	6 cut(s)	17, 160, 296, 516, 663, 767
DpnII	GATC	6 cut(s)	15, 158, 294, 514, 661, 765
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	526, 781
Eco57I	CTGAAG	1 cut(s)	392
Eco72I	CACGTG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	781
EcoO65I	GGTNACC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	66, 672, 877
EcoT22I	ATGCAT	1 cut(s)	346
FaeI	CATG	3 cut(s)	34, 77, 245
FatI	CATG	3 cut(s)	30, 73, 241
FbaI	TGATCA	2 cut(s)	294, 765
Fnu4HI	GCNGC	2 cut(s)	258, 542
FokI	GGATG	3 cut(s)	288, 569, 746
Fsp4HI	GCNGC	2 cut(s)	258, 542
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	2 cut(s)	258, 542
GsaI	CCCAGC	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	2 cut(s)	149, 524
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	34, 77, 245
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	3 cut(s)	189, 359, 464
HpaII	CCGG	2 cut(s)	149, 524
HphI	GGTGA	2 cut(s)	446, 733
Hpy166II	GTNNAC	2 cut(s)	251, 408
Hpy188I	TCNGA	8 cut(s)	10, 114, 227, 319, 364, 379, 799, 825
Hpy188III	TCNNGA	7 cut(s)	370, 468, 510, 665, 698, 779, 891
Hpy8I	GTNNAC	2 cut(s)	251, 408
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	3 cut(s)	440, 695, 729
HpyCH4IV	ACGT	2 cut(s)	253, 456
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 102, 257, 419, 643, 903
HpyF3I	CTNAG	2 cut(s)	20, 107
HpySE526I	ACGT	2 cut(s)	253, 456
Hsp92II	CATG	3 cut(s)	34, 77, 245
Ksp22I	TGATCA	2 cut(s)	294, 765
Kzo9I	GATC	6 cut(s)	15, 158, 294, 514, 661, 765
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	5 cut(s)	310, 331, 388, 547, 803
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	2 cut(s)	253, 456
MaeIII	GTNAC	2 cut(s)	434, 739
MalI	GATC	6 cut(s)	17, 160, 296, 516, 663, 767
MbiI	CCGCTC	1 cut(s)	541
MboI	GATC	6 cut(s)	15, 158, 294, 514, 661, 765
MboII	GAAGA	4 cut(s)	51, 153, 182, 214
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	4 cut(s)	43, 289, 365, 774
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	9 cut(s)	116, 196, 547, 557, 593, 670, 742, 795, 821
Mph1103I	ATGCAT	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	898
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	2 cut(s)	149, 524
MspR9I	CCNGG	4 cut(s)	68, 150, 674, 879
MvaI	CCWGG	3 cut(s)	68, 674, 879
MwoI	GCNNNNNNNGC	6 cut(s)	83, 102, 257, 419, 643, 903
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	6 cut(s)	15, 158, 294, 514, 661, 765
NlaIII	CATG	3 cut(s)	34, 77, 245
NlaIV	GGNNCC	1 cut(s)	783
NmuCI	GTSAC	2 cut(s)	434, 739
NsiI	ATGCAT	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	898
PfeI	GAWTC	2 cut(s)	189, 464
PfoI	TCCNGGA	2 cut(s)	148, 672
PkrI	GCNGC	2 cut(s)	259, 543
PleI	GAGTC	1 cut(s)	353
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	781
PshAI	GACNNNNGTC	1 cut(s)	693
Psp1406I	AACGTT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	781
Psp6I	CCWGG	3 cut(s)	66, 672, 877
PspCI	CACGTG	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	434
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	3 cut(s)	66, 672, 877
PspN4I	GGNNCC	1 cut(s)	783
PspPI	GGNCC	2 cut(s)	526, 781
PspPPI	RGGWCCY	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	2 cut(s)	258, 542
Sau3AI	GATC	6 cut(s)	15, 158, 294, 514, 661, 765
Sau96I	GGNCC	2 cut(s)	526, 781
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	4 cut(s)	68, 150, 674, 879
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	7 cut(s)	72, 131, 256, 340, 459, 505, 604
SfaNI	GCATC	5 cut(s)	310, 331, 388, 547, 803
SinI	GGWCC	2 cut(s)	526, 781
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	4 cut(s)	43, 289, 365, 774
SsiI	CCGC	5 cut(s)	96, 260, 411, 541, 882
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	4 cut(s)	66, 148, 672, 877
TaaI	ACNGT	3 cut(s)	440, 695, 729
TaiI	ACGT	2 cut(s)	256, 459
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	43, 289, 365, 774
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	2 cut(s)	189, 464
TscAI	CASTG	2 cut(s)	424, 480
TseFI	GTSAC	2 cut(s)	434, 739
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	2 cut(s)	434, 739
TspDTI	ATGAA	3 cut(s)	17, 62, 876
TspGWI	ACGGA	3 cut(s)	37, 562, 851
TspRI	CASTG	2 cut(s)	424, 480
VneI	GTGCAC	1 cut(s)	249
VpaK11BI	GGWCC	2 cut(s)	526, 781
XapI	RAATTY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	898
XspI	CTAG	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.