Rh6BG404600

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005994
Physical Location & Seq
Reverse (-)
63168376 .. 63172801
4426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG404600.1

Sequence Viewer

Length: 654 bp
ATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAGGGAGAAATAGTTGGTCTCTTCGGAGTTTTTGATGGTCATGGGGGTGCACGTGCTGCTGAATATGTCAAGCAAAATCTGTTTAGTAATTTGATCAGGCATCCAAAGTTTATTTCTGACACCAAATCTGCCATAGCTGATGCATACAGCCATACAGACTCTGAATTCCTGAAGTCAGAAAATAACCAGAATAGAGATGCTGGGTCAACCGCTTCCACTGCTATCCTAGTTGGTGACCGTTTGCTTGTCGCAAACGTTGGGGATTCCAGAGCAGTGATATGCAGGGGTGGTAATGCAATAGCTGTTTCAAGAGATCACAAGCCGGACCAAACTGATGAGCGGCAACGGATTGAGGATGCAGGAGGATTTGTAATGTGGGCAGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGAGATAGGCTGTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAACAGTCTTGAGTTTCTTATCCTTGCAAGTGATGGACTGTGGGATGTTGTCACCAATGAGGTTTACCATGATTTTCCATTCTTATTACTATTCTATACTTCTTGTCAATGCACTGAGAGTGGAGGGTGA

Protein Analysis

217

Amino Acids

23.87

Weight (kDa)

4.68

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 18 - 199 2.7e-59 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 376
AciI CCGC 2 cut(s) 246, 376
AclI AACGTT 1 cut(s) 291
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 227
AcvI CACGTG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 345, 478
AjnI CCWGG 1 cut(s) 507
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 2 cut(s) 173, 338
AluI AGCT 2 cut(s) 173, 338
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 11, 59
Alw44I GTGCAC 1 cut(s) 84
AlwI GGATC 1 cut(s) 491
AlwNI CAGNNNCTG 1 cut(s) 197
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 281, 568
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 88
BauI CACGAG 1 cut(s) 453
BbrPI CACGTG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 79
BccI CCATC 3 cut(s) 23, 65, 551
BciT130I CCWGG 1 cut(s) 509
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 11, 59
BfaI CTAG 1 cut(s) 263
BisI GCNGC 2 cut(s) 93, 377
BlsI GCNGC 2 cut(s) 94, 378
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 4 cut(s) 145, 166, 223, 382
BoxI GACNNNNGTC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 554
BsaAI YACGTR 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 59
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 390, 420
BseBI CCWGG 1 cut(s) 509
BseGI GGATG 3 cut(s) 136, 397, 574
BseMII CTCAG 1 cut(s) 630
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 359
BsmAI GTCTC 2 cut(s) 11, 59
Bso31I GGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 3 cut(s) 129, 349, 496
BspACI CCGC 2 cut(s) 246, 376
BspCNI CTCAG 1 cut(s) 631
BspPI GGATC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 376
BssMI GATC 3 cut(s) 129, 349, 496
BssSI CACGAG 1 cut(s) 453
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 275, 530, 564
Bst6I CTCTTC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 639
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 3 cut(s) 136, 397, 574
BstKTI GATC 3 cut(s) 132, 352, 499
BstMAI GTCTC 2 cut(s) 11, 59
BstMBI GATC 3 cut(s) 129, 349, 496
BstMWI GCNNNNNNNGC 3 cut(s) 92, 254, 478
BstNI CCWGG 1 cut(s) 509
BstPAI GACNNNNGTC 1 cut(s) 528
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 136, 397, 574
BtsI GCAGTG 2 cut(s) 252, 315
BtsIMutI CAGTG 3 cut(s) 252, 315, 636
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 361
CviAII CATG 2 cut(s) 77, 593
CviJI RGCY 5 cut(s) 173, 186, 338, 358, 472
CviKI_1 RGCY 5 cut(s) 173, 186, 338, 358, 472
DdeI CTNAG 1 cut(s) 639
DpnI GATC 3 cut(s) 131, 351, 498
DpnII GATC 3 cut(s) 129, 349, 496
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 227
Eco72I CACGTG 1 cut(s) 89
Eco91I GGTNACC 1 cut(s) 269
EcoO65I GGTNACC 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 181
FaeI CATG 2 cut(s) 80, 596
FatI CATG 2 cut(s) 76, 592
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 93, 377
FokI GGATG 3 cut(s) 123, 404, 581
Fsp4HI GCNGC 2 cut(s) 93, 377
FspBI CTAG 1 cut(s) 263
GluI GCNGC 2 cut(s) 93, 377
GsaI CCCAGC 1 cut(s) 240
HapII CCGG 1 cut(s) 359
Hin1II CATG 2 cut(s) 80, 596
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 2 cut(s) 194, 299
HpaII CCGG 1 cut(s) 359
HphI GGTGA 2 cut(s) 281, 568
Hpy166II GTNNAC 3 cut(s) 86, 243, 589
Hpy188I TCNGA 4 cut(s) 62, 154, 199, 214
Hpy188III TCNNGA 5 cut(s) 205, 303, 345, 500, 533
Hpy8I GTNNAC 3 cut(s) 86, 243, 589
HpyCH4III ACNGT 3 cut(s) 275, 530, 564
HpyCH4IV ACGT 2 cut(s) 88, 291
HpyCH4V TGCA 8 cut(s) 86, 179, 318, 332, 395, 458, 551, 636
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 254, 478
HpyF3I CTNAG 1 cut(s) 639
HpySE526I ACGT 2 cut(s) 88, 291
Hsp92II CATG 2 cut(s) 80, 596
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 3 cut(s) 129, 349, 496
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 4 cut(s) 145, 166, 223, 382
MaeI CTAG 1 cut(s) 263
MaeII ACGT 2 cut(s) 88, 291
MaeIII GTNAC 2 cut(s) 269, 574
MalI GATC 3 cut(s) 131, 351, 498
MbiI CCGCTC 1 cut(s) 376
MboI GATC 3 cut(s) 129, 349, 496
MboII GAAGA 2 cut(s) 17, 49
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 3 cut(s) 24, 124, 200
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 7 cut(s) 31, 382, 392, 428, 505, 577, 641
Mph1103I ATGCAT 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 3 cut(s) 92, 254, 478
NdeII GATC 3 cut(s) 129, 349, 496
NlaIII CATG 2 cut(s) 80, 596
NmuCI GTSAC 2 cut(s) 269, 574
NsiI ATGCAT 1 cut(s) 181
PfeI GAWTC 1 cut(s) 299
PfoI TCCNGGA 1 cut(s) 507
PkrI GCNGC 2 cut(s) 94, 378
PleI GAGTC 1 cut(s) 188
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 89
PshAI GACNNNNGTC 1 cut(s) 528
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 507
PspCI CACGTG 1 cut(s) 89
PspEI GGTNACC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 507
PspPI GGNCC 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 81
SatI GCNGC 2 cut(s) 93, 377
Sau3AI GATC 3 cut(s) 129, 349, 496
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 88
SetI ASST 6 cut(s) 91, 175, 294, 340, 439, 588
SfaNI GCATC 4 cut(s) 145, 166, 223, 382
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 3 cut(s) 24, 124, 200
SsiI CCGC 2 cut(s) 246, 376
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 3 cut(s) 275, 530, 564
TaiI ACGT 2 cut(s) 91, 294
TasI AATT 3 cut(s) 24, 124, 200
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 1 cut(s) 299
TscAI CASTG 3 cut(s) 259, 315, 643
TseFI GTSAC 2 cut(s) 269, 574
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 2 cut(s) 269, 574
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 3 cut(s) 259, 315, 643
VneI GTGCAC 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.