Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Reverse (-)

43314761 .. 43316880

Gene Structure 2120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0284800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTTCTTGTGGTTGGAGTTTCCGTTGGAGCTTTGATTTTGTGCCTGTTCTTAATTTTTGGTATTCTTTGGTGGAAAGGCTGTCTGGTGGATAGTCAGACATCAAGGGAAGAAGATATGAGAGGATTGGATCTGCGGATTGGTTCTTTCACCTTGAGGCAAATTAAAGCTGGCACTAATAACTTTGATCCTCTAAACAAAATCGGAGAAGGTGGTTTTGGTCCCGTATACAAGGGTACACTATTGGATGGTACTATAATTGCAGTTAAGCAACTATCTTCAAAATCAAAGCAGGGAAATCGTGAATTTGTGAACGAAATAGGCATGATCTCTTGTTTGCAGCATCCAAATCTGTTATTGTTGGTGTATGAGTGCTTGGAGAACAATAGCCTTGCTCGCGCCTTGTACGGTCCAGAGGATGATCGTTTAAACTTGGACTGGCCTACAAGAGACATCAAAACTACGAATGTGTTACTAGACCAAGACCTCAATGCTAAGATCTCGGACTTTGGTTTGGTCAAGCTTGACGAAGAGGAGAACACTCACATTAGCACCAGGATTGCTGGAACTATAGTGACTAATCAGTTAGTGAAAACAACATTTAATTGTTGTGCAGAGGATATATGGCACCGGAATATGCTCTATGGGGTGAAAGACTATCTTAAGCAAAATGAAGCGCTGCAAGGAATCTTAGATAAGTTAAGAAATGACCAGGCCAAGGGGTTGCTCGACTCCCATCATAATGGCTCTAACAAGACTGGTTTTGCTGAATATACACCTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGTTGTATATGGAGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

287

Amino Acids

31.95

Weight (kDa)

5.35

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 129	5.1e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 130	3.7e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	399
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	3 cut(s)	138, 182, 807
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	3 cut(s)	238, 253, 407
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	718
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	1 cut(s)	282
AjnI	CCWGG	2 cut(s)	554, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	4 cut(s)	32, 170, 523, 842
AluI	AGCT	4 cut(s)	32, 170, 523, 842
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	3 cut(s)	138, 182, 807
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	2 cut(s)	440, 714
ApeKI	GCWGC	2 cut(s)	340, 679
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	401, 679
AspS9I	GGNCC	2 cut(s)	221, 410
AsuHPI	GGTGA	2 cut(s)	142, 661
AvaII	GGWCC	2 cut(s)	221, 410
BanI	GGYRCC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	352, 666
BccI	CCATC	2 cut(s)	242, 744
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	2 cut(s)	556, 713
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	680
BfrI	CTTAAG	1 cut(s)	662
BglII	AGATCT	1 cut(s)	498
BisI	GCNGC	2 cut(s)	341, 680
BlsI	GCNGC	2 cut(s)	342, 681
Bme1390I	CCNGG	2 cut(s)	556, 713
Bme18I	GGWCC	2 cut(s)	221, 410
BmgT120I	GGNCC	2 cut(s)	221, 410
BmiI	GGNNCC	2 cut(s)	223, 629
BmrFI	CCNGG	2 cut(s)	556, 713
BmsI	GCATC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse1I	ACTGG	2 cut(s)	443, 763
BseBI	CCWGG	2 cut(s)	556, 713
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	3 cut(s)	253, 343, 424
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseNI	ACTGG	2 cut(s)	443, 763
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	352, 666
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	442, 716
BshNI	GGYRCC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	631
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	442, 716
Bsp143I	GATC	6 cut(s)	130, 187, 327, 421, 498, 799
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	2 cut(s)	442, 716
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	223, 629
BspPI	GGATC	3 cut(s)	138, 182, 807
BspT107I	GGYRCC	1 cut(s)	627
BspTI	CTTAAG	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	443, 763
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	6 cut(s)	130, 187, 327, 421, 498, 799
BssNAI	GTATAC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	717
Bst1107I	GTATAC	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	556, 713
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	172, 397
BstDEI	CTNAG	2 cut(s)	495, 691
BstF5I	GGATG	3 cut(s)	253, 343, 424
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	401, 679
BstKTI	GATC	6 cut(s)	133, 190, 330, 424, 501, 802
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	6 cut(s)	130, 187, 327, 421, 498, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 839
BstNI	CCWGG	2 cut(s)	556, 713
BstSCI	CCNGG	2 cut(s)	554, 711
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	352, 666
BstX2I	RGATCY	2 cut(s)	130, 498
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	2 cut(s)	130, 498
BstZ17I	GTATAC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	442, 716
BtsCI	GGATG	3 cut(s)	253, 343, 424
Cac8I	GCNNGC	2 cut(s)	172, 397
CfoI	GCGC	2 cut(s)	401, 679
Cfr13I	GGNCC	2 cut(s)	221, 410
Csp6I	GTAC	3 cut(s)	237, 252, 406
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	9 cut(s)	32, 81, 170, 390, 442, 523, 716, 747, 842
CviKI_1	RGCY	9 cut(s)	32, 81, 170, 390, 442, 523, 716, 747, 842
CviQI	GTAC	3 cut(s)	237, 252, 406
DdeI	CTNAG	2 cut(s)	495, 691
DpnI	GATC	6 cut(s)	132, 189, 329, 423, 500, 801
DpnII	GATC	6 cut(s)	130, 187, 327, 421, 498, 799
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	717
Eco47I	GGWCC	2 cut(s)	221, 410
Eco47III	AGCGCT	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	801
EcoRII	CCWGG	2 cut(s)	554, 711
EcoT14I	CCWWGG	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	1 cut(s)	328
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	341, 680
FokI	GGATG	3 cut(s)	260, 330, 431
Fsp4HI	GCNGC	2 cut(s)	341, 680
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	2 cut(s)	400, 678
GluI	GCNGC	2 cut(s)	341, 680
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	2 cut(s)	442, 716
HapII	CCGG	1 cut(s)	631
HhaI	GCGC	2 cut(s)	401, 679
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	2 cut(s)	399, 677
HinP1I	GCGC	2 cut(s)	399, 677
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	2 cut(s)	687, 731
HpaII	CCGG	1 cut(s)	631
HphI	GGTGA	2 cut(s)	142, 661
Hpy166II	GTNNAC	3 cut(s)	229, 239, 313
Hpy188I	TCNGA	3 cut(s)	99, 206, 505
Hpy188III	TCNNGA	2 cut(s)	302, 413
Hpy8I	GTNNAC	3 cut(s)	229, 239, 313
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	5 cut(s)	263, 340, 614, 682, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 839
HpyF3I	CTNAG	2 cut(s)	495, 691
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	2 cut(s)	399, 677
Kzo9I	GATC	6 cut(s)	130, 187, 327, 421, 498, 799
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	352, 666
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	471, 574
MalI	GATC	6 cut(s)	132, 189, 329, 423, 500, 801
MboI	GATC	6 cut(s)	130, 187, 327, 421, 498, 799
MboII	GAAGA	4 cut(s)	122, 125, 270, 542
MflI	RGATCY	2 cut(s)	130, 498
MluCI	AATT	5 cut(s)	54, 162, 258, 305, 604
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	8 cut(s)	116, 150, 201, 409, 497, 526, 610, 823
MseI	TTAA	7 cut(s)	53, 165, 267, 428, 603, 663, 701
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	842
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	1 cut(s)	631
MspR9I	CCNGG	2 cut(s)	556, 713
MssI	GTTTAAAC	1 cut(s)	429
MvaI	CCWGG	2 cut(s)	556, 713
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	396, 839
NdeII	GATC	6 cut(s)	130, 187, 327, 421, 498, 799
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	223, 629
NmuCI	GTSAC	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	687
PkrI	GCNGC	2 cut(s)	342, 681
PleI	GAGTC	1 cut(s)	725
PmeI	GTTTAAAC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	554, 711
PspGI	CCWGG	2 cut(s)	554, 711
PspN4I	GGNNCC	2 cut(s)	223, 629
PspPI	GGNCC	2 cut(s)	221, 410
PsuI	RGATCY	2 cut(s)	130, 498
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	3 cut(s)	238, 253, 407
RsaNI	GTAC	3 cut(s)	237, 252, 406
RseI	CAYNNNNRTG	1 cut(s)	741
SaqAI	TTAA	7 cut(s)	53, 165, 267, 428, 603, 663, 701
SatI	GCNGC	2 cut(s)	341, 680
Sau3AI	GATC	6 cut(s)	130, 187, 327, 421, 498, 799
Sau96I	GGNCC	2 cut(s)	221, 410
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	2 cut(s)	556, 713
SetI	ASST	8 cut(s)	34, 155, 172, 214, 489, 525, 781, 844
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	2 cut(s)	221, 410
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	2 cut(s)	154, 662
SmoI	CTYRAG	2 cut(s)	154, 662
Sse9I	AATT	5 cut(s)	54, 162, 258, 305, 604
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	554, 711
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	729
TasI	AATT	5 cut(s)	54, 162, 258, 305, 604
TfiI	GAWTC	1 cut(s)	687
Tru1I	TTAA	7 cut(s)	53, 165, 267, 428, 603, 663, 701
Tru9I	TTAA	7 cut(s)	53, 165, 267, 428, 603, 663, 701
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	2 cut(s)	340, 679
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	1 cut(s)	687
TspGWI	ACGGA	1 cut(s)	13
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	221, 410
XapI	RAATTY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.