Rw6G034660

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005994
Physical Location & Seq
Reverse (-)
59346229 .. 59350643
4415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034660.1

Sequence Viewer

Length: 879 bp
ATGGGTTATCTCAATTCCGTTTTGTCATCTTCAAGCCAGGTTCATGCTGACGACGCACCCGTAAGCGGTGGTGGCCTCAGTCAGAATGGAAAGTTCAGCTATGGATATGCAAGTTCTCCGGGAAAAAGATCTTCTATGGAAGATTTTTATGAGACAAGAATCGATGGTGTTGAGGGAGAAATAGTTGGTCTCTTCGGAGTTTTTGATGGTCATGGGGGTGCACGTGCTGCTGAATATGTCAAGCAAAATCTGTTTAGTAATTTGATCAGGCATCCAAAGTTTATTTCTGACACCAAATCTGCCATAGCTGATGCATACAGCCATACAGACTCTGAATTCCTGAAGTCAGAAAATAACCAGAATAGAGATGCTGGGTCAACCGCTTCCACTGCTATCCTAGTTGGTGATCGTTTGCTTGTCGCAAACGTTGGGGATTCCAGAGCAGTGATATGCAGGGGTGGTAATGCAATAGCTGTTTCAAGAGATCACAAGCCGGACCAAACTGATGAGCGGCAACGGATTGAGGATGCTGGAGGATTTGTAATGTGGGCAGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGAGATAGGCTGTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAACAGTCTTGAGTTTCTTATCCTTGCAAGTGATGGACTGTGGGATGTTGTCACCAATGAGGAAGCCGTTGCAATGATTAAACCAATTCAGGACCCAAAACAGGCATCAGAGAGGCTAATGCAGGAAGCATATCAGAGAGGAAGTGCTGATAATATTACTTGCGTTGTTGTCCGTTTCTTGGCTAATCCAGGCGGTTCATCACGAAGCAGTTCTGGCTAA

Protein Analysis

292

Amino Acids

31.42

Weight (kDa)

5.04

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 62 - 272 1.1e-66 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 511
AciI CCGC 4 cut(s) 66, 381, 511, 852
AclI AACGTT 1 cut(s) 426
AclWI GGATC 1 cut(s) 626
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 362
AcvI CACGTG 1 cut(s) 224
AfiI CCNNNNNNNGG 3 cut(s) 65, 760, 838
AgsI TTSAA 3 cut(s) 33, 480, 613
AjnI CCWGG 3 cut(s) 36, 642, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 268, 300
AluBI AGCT 3 cut(s) 99, 308, 473
AluI AGCT 3 cut(s) 99, 308, 473
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 146, 194
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 1 cut(s) 626
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 73
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 868
AspS9I GGNCC 2 cut(s) 496, 751
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 416, 703
AvaII GGWCC 2 cut(s) 496, 751
BaeGI GKGCMC 1 cut(s) 223
BauI CACGAG 1 cut(s) 588
BbrPI CACGTG 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 214
BccI CCATC 3 cut(s) 158, 200, 686
BceAI ACGGC 1 cut(s) 710
BciT130I CCWGG 3 cut(s) 38, 644, 849
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 146, 194
BfaI CTAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 128
BisI GCNGC 2 cut(s) 228, 512
BlsI GCNGC 2 cut(s) 229, 513
Bme1390I CCNGG 4 cut(s) 38, 120, 644, 849
Bme18I GGWCC 2 cut(s) 496, 751
BmgT120I GGNCC 2 cut(s) 496, 751
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 4 cut(s) 38, 120, 644, 849
BmsI GCATC 5 cut(s) 280, 301, 358, 517, 773
BoxI GACNNNNGTC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 194
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 760, 838
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 3 cut(s) 38, 644, 849
BseCI ATCGAT 1 cut(s) 162
BseGI GGATG 3 cut(s) 271, 532, 709
BseLI CCNNNNNNNGG 3 cut(s) 65, 760, 838
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 1 cut(s) 75
BshVI ATCGAT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 119, 494
BslI CCNNNNNNNGG 3 cut(s) 65, 760, 838
BsmAI GTCTC 2 cut(s) 146, 194
BsnI GGCC 1 cut(s) 75
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 5 cut(s) 128, 264, 406, 484, 631
BspACI CCGC 4 cut(s) 66, 381, 511, 852
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 90
BspDI ATCGAT 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 753
BspPI GGATC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 738
BssMI GATC 5 cut(s) 128, 264, 406, 484, 631
BssSI CACGAG 1 cut(s) 588
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 3 cut(s) 38, 644, 849
Bst4CI ACNGT 2 cut(s) 665, 699
Bst6I CTCTTC 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 3 cut(s) 271, 532, 709
BstKTI GATC 5 cut(s) 131, 267, 409, 487, 634
BstMAI GTCTC 2 cut(s) 146, 194
BstMBI GATC 5 cut(s) 128, 264, 406, 484, 631
BstMWI GCNNNNNNNGC 6 cut(s) 53, 72, 227, 389, 613, 873
BstNI CCWGG 3 cut(s) 38, 644, 849
BstPAI GACNNNNGTC 1 cut(s) 663
BstSCI CCNGG 4 cut(s) 36, 118, 642, 847
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 1 cut(s) 75
BsuTUI ATCGAT 1 cut(s) 162
BtsCI GGATG 3 cut(s) 271, 532, 709
BtsI GCAGTG 2 cut(s) 387, 450
BtsIMutI CAGTG 2 cut(s) 387, 450
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 496, 751
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 1 cut(s) 62
CviAII CATG 2 cut(s) 44, 212
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 130, 266, 408, 486, 633
DpnII GATC 5 cut(s) 128, 264, 406, 484, 631
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 496, 751
Eco57I CTGAAG 1 cut(s) 362
Eco72I CACGTG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 36, 642, 847
EcoT22I ATGCAT 1 cut(s) 316
FaeI CATG 2 cut(s) 47, 215
FatI CATG 2 cut(s) 43, 211
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 228, 512
FokI GGATG 3 cut(s) 258, 539, 716
Fsp4HI GCNGC 2 cut(s) 228, 512
FspBI CTAG 1 cut(s) 398
GluI GCNGC 2 cut(s) 228, 512
GsaI CCCAGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 1 cut(s) 75
HapII CCGG 2 cut(s) 119, 494
HgaI GACGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 47, 215
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 3 cut(s) 159, 329, 434
HpaII CCGG 2 cut(s) 119, 494
HphI GGTGA 2 cut(s) 416, 703
Hpy166II GTNNAC 2 cut(s) 221, 378
Hpy188I TCNGA 7 cut(s) 84, 197, 289, 334, 349, 769, 795
Hpy188III TCNNGA 7 cut(s) 340, 438, 480, 635, 668, 749, 861
Hpy8I GTNNAC 2 cut(s) 221, 378
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 665, 699
HpyCH4IV ACGT 2 cut(s) 223, 426
HpyCH4V TGCA 9 cut(s) 110, 221, 314, 453, 467, 593, 686, 731, 781
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 72, 227, 389, 613, 873
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 223, 426
Hsp92II CATG 2 cut(s) 47, 215
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 5 cut(s) 128, 264, 406, 484, 631
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 5 cut(s) 280, 301, 358, 517, 773
MaeI CTAG 1 cut(s) 398
MaeII ACGT 2 cut(s) 223, 426
MaeIII GTNAC 1 cut(s) 709
MalI GATC 5 cut(s) 130, 266, 408, 486, 633
MbiI CCGCTC 1 cut(s) 511
MboI GATC 5 cut(s) 128, 264, 406, 484, 631
MboII GAAGA 4 cut(s) 21, 123, 152, 184
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 4 cut(s) 13, 259, 335, 744
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 9 cut(s) 86, 166, 517, 527, 563, 640, 712, 765, 791
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 868
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 2 cut(s) 119, 494
MspR9I CCNGG 4 cut(s) 38, 120, 644, 849
MvaI CCWGG 3 cut(s) 38, 644, 849
MwoI GCNNNNNNNGC 6 cut(s) 53, 72, 227, 389, 613, 873
NciI CCSGG 1 cut(s) 120
NdeII GATC 5 cut(s) 128, 264, 406, 484, 631
NlaIII CATG 2 cut(s) 47, 215
NlaIV GGNNCC 1 cut(s) 753
NmuCI GTSAC 1 cut(s) 709
NsiI ATGCAT 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 868
PfeI GAWTC 2 cut(s) 159, 434
PfoI TCCNGGA 2 cut(s) 118, 642
PkrI GCNGC 2 cut(s) 229, 513
PleI GAGTC 1 cut(s) 323
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
PpsI GAGTC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 751
PshAI GACNNNNGTC 1 cut(s) 663
Psp1406I AACGTT 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 751
Psp6I CCWGG 3 cut(s) 36, 642, 847
PspCI CACGTG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 3 cut(s) 36, 642, 847
PspN4I GGNNCC 1 cut(s) 753
PspPI GGNCC 2 cut(s) 496, 751
PspPPI RGGWCCY 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 2 cut(s) 228, 512
Sau3AI GATC 5 cut(s) 128, 264, 406, 484, 631
Sau96I GGNCC 2 cut(s) 496, 751
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 4 cut(s) 38, 120, 644, 849
SduI GDGCHC 1 cut(s) 223
SetI ASST 7 cut(s) 42, 101, 226, 310, 429, 475, 574
SfaNI GCATC 5 cut(s) 280, 301, 358, 517, 773
SinI GGWCC 2 cut(s) 496, 751
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
Sse9I AATT 4 cut(s) 13, 259, 335, 744
SsiI CCGC 4 cut(s) 66, 381, 511, 852
SspI AATATT 1 cut(s) 814
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 4 cut(s) 36, 118, 642, 847
TaaI ACNGT 2 cut(s) 665, 699
TaiI ACGT 2 cut(s) 226, 429
TaqI TCGA 1 cut(s) 162
TasI AATT 4 cut(s) 13, 259, 335, 744
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 2 cut(s) 159, 434
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 2 cut(s) 394, 450
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 2 cut(s) 32, 846
TspGWI ACGGA 3 cut(s) 7, 532, 821
TspRI CASTG 2 cut(s) 394, 450
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 2 cut(s) 496, 751
XapI RAATTY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 868
XspI CTAG 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.