RLG00000011464

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005994
Physical Location & Seq
Forward (+)
9619838 .. 9624350
4513 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011464

Sequence Viewer

Length: 879 bp
ATGGGTTATCTCAATTCCGTTTTGTCATCTTCAAGCCAGGTTCATGCTGACGACGCACCCGTAAGCGGTGGTGGCCTCAGTCAGAATGGAAAGTTCAGCTATGGATATGCAAGTTCTCCGGGAAAAAGATCTTCTATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAGGGAGAAATAGTTGGTCTCTTTGGAGTTTTTGATGGTCATGGGGGTGCACGTGCTGCTGAATATGTCAAGCAAAATCTGTTTAGTAATTTGATCAGGCATCCCAAGTTTATTTCTGACACCAAATCTGCCATAGCTGATGCATACAGCCATACAGACTCTGAATTCCTGAAGTCGGAAAATAACCAGAATAGAGATGCTGGGTCAACCGCTTCCACTGCTATCCTAGTTGGTGACCGTTTGCTTGTCGCAAATGTTGGGGATTCCAGAGCAGTGATATGCAGGGGTGGTAATGCAATAGCTGTTTCAAGAGATCACAAGCCGGACCAAACTGATGAGCGGCAACGGATTGAGGATGCAGGAGGATTTGTAATGTGGGCAGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGAGATAGGCTGTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAACAGTCTTGAGTTTCTTATCCTTGCAAGTGATGGACTGTGGGATGTTGTCACCAATGAGGAAGCTGTTGCAATGATCAAACCAATTCAGGACCCAAAACAGGCATCAGAGAGGCTAATGCAGGAAGCATATCAGAGAGGAAGTGCTGATAATATTACTTGCGTTGTTGTCCGTTTCTTGGCTAATCCAGGCGGTTCATCACGAAGCAGTTCTGGCTAA

Protein Analysis

293

Amino Acids

31.42

Weight (kDa)

5.04

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 62 - 272 1.1e-66 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 511
AciI CCGC 4 cut(s) 66, 381, 511, 852
AclWI GGATC 1 cut(s) 626
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 362
AcvI CACGTG 1 cut(s) 224
AfiI CCNNNNNNNGG 4 cut(s) 65, 346, 760, 838
AgsI TTSAA 3 cut(s) 33, 480, 613
AjnI CCWGG 3 cut(s) 36, 642, 847
AluBI AGCT 4 cut(s) 99, 308, 473, 725
AluI AGCT 4 cut(s) 99, 308, 473, 725
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 146, 194
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 1 cut(s) 626
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 73
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 868
AspS9I GGNCC 2 cut(s) 496, 751
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 416, 703
AvaII GGWCC 2 cut(s) 496, 751
BaeGI GKGCMC 1 cut(s) 223
BauI CACGAG 1 cut(s) 588
BbrPI CACGTG 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 214
BccI CCATC 3 cut(s) 158, 200, 686
BciT130I CCWGG 3 cut(s) 38, 644, 849
BclI TGATCA 2 cut(s) 264, 735
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 146, 194
BfaI CTAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 128
BisI GCNGC 2 cut(s) 228, 512
BlsI GCNGC 2 cut(s) 229, 513
Bme1390I CCNGG 4 cut(s) 38, 120, 644, 849
Bme18I GGWCC 2 cut(s) 496, 751
BmgT120I GGNCC 2 cut(s) 496, 751
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 4 cut(s) 38, 120, 644, 849
BmsI GCATC 5 cut(s) 280, 301, 358, 517, 773
BoxI GACNNNNGTC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 194
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 525, 555
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 346, 760, 838
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 3 cut(s) 38, 644, 849
BseGI GGATG 3 cut(s) 271, 532, 709
BseLI CCNNNNNNNGG 4 cut(s) 65, 346, 760, 838
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 119, 494
BslI CCNNNNNNNGG 4 cut(s) 65, 346, 760, 838
BsmAI GTCTC 2 cut(s) 146, 194
BsnI GGCC 1 cut(s) 75
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 5 cut(s) 128, 264, 484, 631, 735
BspACI CCGC 4 cut(s) 66, 381, 511, 852
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 753
BspPI GGATC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 738
BssMI GATC 5 cut(s) 128, 264, 484, 631, 735
BssSI CACGAG 1 cut(s) 588
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 3 cut(s) 38, 644, 849
Bst4CI ACNGT 3 cut(s) 410, 665, 699
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 77
BstEII GGTNACC 1 cut(s) 404
BstF5I GGATG 3 cut(s) 271, 532, 709
BstKTI GATC 5 cut(s) 131, 267, 487, 634, 738
BstMAI GTCTC 2 cut(s) 146, 194
BstMBI GATC 5 cut(s) 128, 264, 484, 631, 735
BstMWI GCNNNNNNNGC 6 cut(s) 53, 72, 227, 389, 613, 873
BstNI CCWGG 3 cut(s) 38, 644, 849
BstPAI GACNNNNGTC 1 cut(s) 663
BstPI GGTNACC 1 cut(s) 404
BstSCI CCNGG 4 cut(s) 36, 118, 642, 847
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 3 cut(s) 271, 532, 709
BtsI GCAGTG 2 cut(s) 387, 450
BtsIMutI CAGTG 2 cut(s) 387, 450
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 496, 751
CseI GACGC 1 cut(s) 62
CviAII CATG 2 cut(s) 44, 212
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 130, 266, 486, 633, 737
DpnII GATC 5 cut(s) 128, 264, 484, 631, 735
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 496, 751
Eco57I CTGAAG 1 cut(s) 362
Eco72I CACGTG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 404
EcoO109I RGGNCCY 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 36, 642, 847
EcoT22I ATGCAT 1 cut(s) 316
FaeI CATG 2 cut(s) 47, 215
FatI CATG 2 cut(s) 43, 211
FbaI TGATCA 2 cut(s) 264, 735
Fnu4HI GCNGC 2 cut(s) 228, 512
FokI GGATG 3 cut(s) 258, 539, 716
Fsp4HI GCNGC 2 cut(s) 228, 512
FspBI CTAG 1 cut(s) 398
GluI GCNGC 2 cut(s) 228, 512
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 75
HapII CCGG 2 cut(s) 119, 494
HgaI GACGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 47, 215
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 2 cut(s) 329, 434
HpaII CCGG 2 cut(s) 119, 494
HphI GGTGA 2 cut(s) 416, 703
Hpy166II GTNNAC 2 cut(s) 221, 378
Hpy188I TCNGA 6 cut(s) 84, 289, 334, 349, 769, 795
Hpy188III TCNNGA 7 cut(s) 340, 438, 480, 635, 668, 749, 861
Hpy8I GTNNAC 2 cut(s) 221, 378
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 3 cut(s) 410, 665, 699
HpyCH4IV ACGT 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 72, 227, 389, 613, 873
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 47, 215
Ksp22I TGATCA 2 cut(s) 264, 735
Kzo9I GATC 5 cut(s) 128, 264, 484, 631, 735
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 5 cut(s) 280, 301, 358, 517, 773
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 404, 709
MalI GATC 5 cut(s) 130, 266, 486, 633, 737
MbiI CCGCTC 1 cut(s) 511
MboI GATC 5 cut(s) 128, 264, 484, 631, 735
MboII GAAGA 3 cut(s) 21, 123, 152
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 5 cut(s) 13, 159, 259, 335, 744
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 327, 547
MnlI CCTC 9 cut(s) 86, 166, 517, 527, 563, 640, 712, 765, 791
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 868
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 2 cut(s) 119, 494
MspR9I CCNGG 4 cut(s) 38, 120, 644, 849
MvaI CCWGG 3 cut(s) 38, 644, 849
MwoI GCNNNNNNNGC 6 cut(s) 53, 72, 227, 389, 613, 873
NciI CCSGG 1 cut(s) 120
NdeII GATC 5 cut(s) 128, 264, 484, 631, 735
NlaIII CATG 2 cut(s) 47, 215
NlaIV GGNNCC 1 cut(s) 753
NmuCI GTSAC 2 cut(s) 404, 709
NsiI ATGCAT 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 868
PfeI GAWTC 1 cut(s) 434
PfoI TCCNGGA 2 cut(s) 118, 642
PkrI GCNGC 2 cut(s) 229, 513
PleI GAGTC 1 cut(s) 323
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
PpsI GAGTC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 751
PshAI GACNNNNGTC 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 751
Psp6I CCWGG 3 cut(s) 36, 642, 847
PspCI CACGTG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 3 cut(s) 36, 642, 847
PspN4I GGNNCC 1 cut(s) 753
PspPI GGNCC 2 cut(s) 496, 751
PspPPI RGGWCCY 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 216
SatI GCNGC 2 cut(s) 228, 512
Sau3AI GATC 5 cut(s) 128, 264, 484, 631, 735
Sau96I GGNCC 2 cut(s) 496, 751
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 4 cut(s) 38, 120, 644, 849
SduI GDGCHC 1 cut(s) 223
SetI ASST 7 cut(s) 42, 101, 226, 310, 475, 574, 727
SfaNI GCATC 5 cut(s) 280, 301, 358, 517, 773
SinI GGWCC 2 cut(s) 496, 751
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
Sse9I AATT 5 cut(s) 13, 159, 259, 335, 744
SsiI CCGC 4 cut(s) 66, 381, 511, 852
SspI AATATT 1 cut(s) 814
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 4 cut(s) 36, 118, 642, 847
TaaI ACNGT 3 cut(s) 410, 665, 699
TaiI ACGT 1 cut(s) 226
TasI AATT 5 cut(s) 13, 159, 259, 335, 744
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 1 cut(s) 434
TscAI CASTG 2 cut(s) 394, 450
TseFI GTSAC 2 cut(s) 404, 709
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 2 cut(s) 404, 709
TspDTI ATGAA 2 cut(s) 32, 846
TspGWI ACGGA 3 cut(s) 7, 532, 821
TspRI CASTG 2 cut(s) 394, 450
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 2 cut(s) 496, 751
XapI RAATTY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 868
XspI CTAG 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.