Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Forward (+)

43270779 .. 43274364

Gene Structure 3586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0284500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3456 bp

ATGCCAATGCTGTTGAGGCAGCAGCCCTCTAACACCTACAATCACCACCAAATGTCGAGGCCACTATCGTTCACCACCATCGATTTCTTCTTCCTCTTCGTCTTCACACTCGCAACGTCTGCTGCTTCTTTGGCTGCTGCAAATGTTGACGTTCTGACATTACATACATGGCTTCAAGGCTCTACTACCTCACCCTCTTCTTCTGATTTCTCCAACTGGAACCCTTCAGACCCCAACCCTTGTAATTGGTCCTACATTACTTGTTCTTCTCAAAACTTTGTCACTGAAATTAATATCCAGTTTATTGAGCTAGCCCTTCCCTTTCCTTCAAATTTTTCCTCCCTTGCATTTCTTCAAAAGCTCATCATTTCTGGTGCTAATCTTACTGGAACAATCTCACCTGATATTGGATATTGCAAATCGCTTCTGGTGCTTGACGTAAGTTCAAACAGTCTTGTGGGTAGTATTCCTACAAGTATTGGCAGGCTTGAAAATCTTCAGGACCTGATCTTAAACTCTAACCAGCTTACTGGTCAAGTACCAATGGAGCTTGGTGATTGCGCCAGCCTGAAGAATCTTCTCATATTTGATAACTACCTAAGTGGTTATCTTCCTGCTACACTCGGAAAGTTACTAAACTTGGAAGTCATTCGAGCTGGAGGGAACAAAGACATGTCAGGAAATATCCCGGATGAGCTTGGAAACTGCAAGAACTTGCAGGTGTTGGGGCTTGCTGATACTAAAGTTTCTGGTTTGATACCTTCATCATTGGGTAAGCTCAGCATGCTGCAGACGCTGTCGATTTATACTACTATGCTATCGGGTGAGATTCCACCGGATATTGGCAACTGTTCAGAACTTGTCAACTTGTTCTTGTATGAGAATGACCTTTCTGGTTCACTACCACCAGAGTTGGGCAAGCTTCATAAGCTGGAGAAGATGTTATTGTGGCAAAACAACCTTGATGGGACTATTCCTGAGGAAATTGGGAACTGCAGAAGCTTGAAGACCATAGATGTCTCTCTAAATTCTGTTTCTGGAAGCATACCTCAGTCTTTCGGAAACCTCTCAAATCTTGAGGAGCTTATGCTTAGTAACAACAACATCTCTGGTTCAATTCCCTCAGTTCTTTCCAATGCTACAAAACTTGTGCAGCTGCAGCTTGATACTAATCAGATTTCAGGCTTGATCCCAACTGAGCTGGGAATGTTGAAGGAGCTCACAGTCTTTTTTGCTTGGCAGAACAAACTCGAAGGTAGTATTCCATCAGAATTGGCCGGTTGTGAGAGTCTTCAAGCTCTAGATCTCTCACACAATGCTCTCACTGGTAACATACCTTCTGGCCTATTTCAGCTGCAAAATTTAACCAAGCTTCTCTTGATTTCTAATGACATTTCGGGTCCAATACCTTCGGTGATTGGAAATTGTACTTCTCTTATCCGGCTAAGGCTTGTACATAACAGAATCAGTGGAGAGATCCCAAAAGAAATTGGATTCCTTGATAACCTCAGTTTCCTTGATCTGTCTGAAAACCGTCTTGTTGGTACCGTACCAGAAGAAATTGGAAAATGCAGTTCATTACAGCTACTCAACTTAAGTAACAACACCCTTGGAGGTAATTTGCCTAGCTCTTTTTCTTCTCTCACAAGGCTTCAAGTACTGGATGTCTCTGTGAATCAATTTGTAGGTCAGATTCCTGAGAGTTTCGGTGGACTTGCTTCACTTAATAGGCTCATCCTCAGTAGCAACTCCTTAACTGAGTCAATCCCCTCTTCACTTGGTAAATGTTCAAACCTTCAACTGCTTGATCTTAGTAGCAACAAGCTCACTGGGATGATCCCAGAGCAACTGTTTGAAATTGAAGCTCTTGACATTGCTTTGAACCTGAGTTTCAATGCTTTATATGGGATAATCCCACCACAGATTTCTGCTCTCAATAAGCTATCCATACTAGACCTTTCACACAACAAGCTTGAAGGTGATCTGTTGGCACTTTCCGGGCTTATAAATCTTGTTTCTCTGAACATCTCATACAACAACTTCACTGGCTATCTTCCTGACAGCAAGGTGTTTCGACAGTTGTCAGCAACAGACTTGGTGGGAAACAAAGGATTGTGCTCTAGAGGTCATGATTTATGTTTCCTCAGCAATGGTACAACAATAGCTATGTCTAGAAGTGGCAGTTTTAGGAGGTCATGGCGACTTAAATTGGCCATTGCATTGCTAATAGCCTTGACCATTGCTTTGTCCATTTTTGGGATAGTTGCAGTATTTCGAGCACGAAAGATGAATGGAGAGGACAATGATTCTGAGATTGGAGGGGACTCATGGCCTTGGAAATTCACTCCATTTCAGAAGGTGAGTTTCTCAGTTGAGCAAGTTCTAAAATGTCTAGTAGAAACCAATGTAATAGGAAAGGGATGCTCAGGAGTTGTTTACCGGGCAGAAATGGAAAACGAAGACATTGCAGTAAAGAAGCTCTGGCCAACAACAACTGCTTCCAGATATGATTGTCAAAGTAGAGGAGTTCGTGATTCCTTTTCGGCTGAGGTGAAGACCCTTGGCTCCATTCGCCACAAGAACATTGTTAGGTTCTTGGGTTGCTGTTGGAACCGAAACACAAGATTGCTTATGTATGAGTACATGCCAAATGGGAGCTTGGGTGGTTTACTTCATGAGAGAAGCGGTAACTGCTTAGAATGGGACATCAGATATCGCATAGTACTCGGGGCTGCACAAGGCTTGGCTTATTTGCACCATGACTGTGTTCCTCCTATAGTTCACAGAGACATTAAGGCCAACAACATTCTCATTGGTCCAGATTTTGAGCCCTGCATTGCTGATTTTGGGCTTGCCAAGCTTGTTGATGAAGGAGATTTTGCTCGGTCCTCCAACACGGTTGCAGGTTCTTATGGCTACATTGCTCCTGAGTATGGATACTCAATGAAGATAACAGAGAAAAGCGATGTGTACAGCTACGGCATAGTTGTGCTAGAAGTGCTAACAGGGAAGCAACCAATTGATCCAACCATACCAGATGGACTCCACATTGTGGATTGGGTAAGGCAGAAGAGAGGGGGAATTGAGGTACTTGATCAAAGCTTACGAGCACGACCAGAACCCGAGATTGAGGAAATGCTGCAGACATTAGGTGTGGCATTGCTGTGCATTAACCCTACCCCAGATGACAGACCAACCATGAAAGATGTAGCAGCAATGCTCAAAGAGATTAGGCAGGAGAGAGAGGAGTGCATGAAAGCTAACATGAGGCTTCTCAATGGGTCCAATTCTGCAAATGATCATGGACAAGAAACTATGATCAGTTGCAGTGGAGGAACATCATCAGCTATGGTGCAGCAACAACATCCTTACCCTCCAACAAGTACCAGCACAAGTTTCTCTGCTTCCTCATTGCTATACACTTCATCTTCCAATATCAAAACAATTCTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

1151

Amino Acids

125.46

Weight (kDa)

5.3

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	48 - 89	1e-05	Leucine rich repeat N-terminal domain
LRR_14	PF23598	230 - 317	1.4e-08	Leucine-rich repeat region
LRR_14	PF23598	324 - 410	2.8e-08	Leucine-rich repeat region
LRR_8	PF13855	333 - 393	5.8e-08	Leucine rich repeat
LRR_14	PF23598	420 - 508	5.1e-07	Leucine-rich repeat region
LRR_14	PF23598	482 - 699	7.3e-15	Leucine-rich repeat region
LRR_8	PF13855	502 - 561	7e-06	Leucine rich repeat
LRR_8	PF13855	526 - 585	1.1e-06	Leucine rich repeat
LRR_8	PF13855	566 - 609	3.2e-06	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	801 - 1073	3.9e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	801 - 1071	3.5e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2006
AarI	CACCTGC	1 cut(s)	709
Acc36I	ACCTGC	2 cut(s)	709, 2894
Acc65I	GGTACC	1 cut(s)	1544
AccB1I	GGYRCC	1 cut(s)	1544
AccB7I	CCANNNNNTGG	1 cut(s)	3052
AciI	CCGC	1 cut(s)	2685
AclWI	GGATC	4 cut(s)	1183, 1471, 1831, 3017
AcoI	YGGCCR	3 cut(s)	1275, 2211, 2483
AcsI	RAATTY	4 cut(s)	331, 1027, 1360, 2339
AcuI	CTGAAG	3 cut(s)	210, 482, 590
AdeI	CACNNNGTG	1 cut(s)	3052
AfiI	CCNNNNNNNGG	6 cut(s)	407, 842, 914, 2256, 2933, 3052
AflII	CTTAAG	1 cut(s)	1594
AflIII	ACRYGT	1 cut(s)	672
Alw21I	GWGCWC	4 cut(s)	1221, 2120, 2281, 3112
Alw26I	GTCTC	3 cut(s)	1024, 1672, 2781
AlwI	GGATC	4 cut(s)	1183, 1471, 1831, 3017
AlwNI	CAGNNNCTG	2 cut(s)	505, 796
Ama87I	CYCGRG	2 cut(s)	2726, 3122
AoxI	GGCC	7 cut(s)	59, 1275, 1342, 2211, 2330, 2483, 2796
ApoI	RAATTY	4 cut(s)	331, 1027, 1360, 2339
ArsI	GACNNNNNNTTYG	2 cut(s)	2227, 2259
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	2 cut(s)	495, 648
Asp718I	GGTACC	1 cut(s)	1544
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
AsuC2I	CCSGG	3 cut(s)	689, 1999, 2441
AsuNHI	GCTAGC	1 cut(s)	310
AvaI	CYCGRG	2 cut(s)	2726, 3122
AvaII	GGWCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
AxyI	CCTNAGG	1 cut(s)	978
BaeI	ACNNNNGTAYC	2 cut(s)	729, 762
BalI	TGGCCA	2 cut(s)	2213, 2485
BanI	GGYRCC	1 cut(s)	1544
BanII	GRGCYC	2 cut(s)	1221, 2832
BarI	GAAGNNNNNNTAC	2 cut(s)	1321, 1353
BbsI	GAAGAC	5 cut(s)	94, 1013, 1283, 2466, 2561
Bbv12I	GWGCWC	4 cut(s)	1221, 2120, 2281, 3112
BbvCI	CCTCAGC	2 cut(s)	2144, 2547
BccI	CCATC	4 cut(s)	86, 959, 1273, 3032
BceAI	ACGGC	1 cut(s)	2995
BcgI	CGANNNNNNTGC	4 cut(s)	2447, 2481, 2707, 2741
BciVI	GTATCC	1 cut(s)	2930
BclI	TGATCA	3 cut(s)	3094, 3298, 3318
BcnI	CCSGG	3 cut(s)	689, 1999, 2441
BcoDI	GTCTC	3 cut(s)	1024, 1672, 2781
BfaI	CTAG	8 cut(s)	311, 1301, 1626, 1952, 2121, 2172, 2393, 2993
BfmI	CTRYAG	5 cut(s)	788, 994, 1157, 2775, 3140
BfrI	CTTAAG	1 cut(s)	1594
BfuAI	ACCTGC	2 cut(s)	709, 2894
BfuI	GTATCC	1 cut(s)	2930
BglII	AGATCT	1 cut(s)	1303
BlpI	GCTNAGC	1 cut(s)	779
BmcAI	AGTACT	2 cut(s)	1659, 2724
Bme1390I	CCNGG	3 cut(s)	689, 1999, 2441
Bme18I	GGWCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
BmeT110I	CYCGRG	2 cut(s)	2726, 3122
BmgT120I	GGNCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
BmiI	GGNNCC	6 cut(s)	221, 1401, 1546, 2566, 2612, 3283
BmrFI	CCNGG	3 cut(s)	689, 1999, 2441
BmrI	ACTGGG	1 cut(s)	1839
BmsI	GCATC	1 cut(s)	2411
BmtI	GCTAGC	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	1839
BoxI	GACNNNNGTC	1 cut(s)	2080
BpiI	GAAGAC	5 cut(s)	94, 1013, 1283, 2466, 2561
BpmI	CTGGAG	2 cut(s)	678, 953
Bpu10I	CCTNAGC	4 cut(s)	1445, 2144, 2425, 2547
Bpu1102I	GCTNAGC	1 cut(s)	779
BpuEI	CTTGAG	1 cut(s)	1097
BpuMI	CCSGG	3 cut(s)	689, 1999, 2441
Bsa29I	ATCGAT	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	1170
BsaJI	CCNNGG	3 cut(s)	1609, 2333, 2560
BsaWI	WCCGGW	1 cut(s)	835
BsaXI	ACNNNNNCTCC	4 cut(s)	926, 956, 2647, 2677
Bsc4I	CCNNNNNNNGG	6 cut(s)	407, 842, 914, 2256, 2933, 3052
Bse118I	RCCGGY	1 cut(s)	1277
Bse1I	ACTGG	8 cut(s)	221, 298, 391, 535, 1330, 1665, 1834, 2050
Bse21I	CCTNAGG	1 cut(s)	978
Bse8I	GATNNNNATC	1 cut(s)	1170
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	1609, 2333, 2560
BseGI	GGATG	6 cut(s)	697, 1669, 1734, 1839, 2426, 3364
BseJI	GATNNNNATC	1 cut(s)	1170
BseLI	CCNNNNNNNGG	6 cut(s)	407, 842, 914, 2256, 2933, 3052
BseNI	ACTGG	8 cut(s)	221, 298, 391, 535, 1330, 1665, 1834, 2050
BseRI	GAGGAG	3 cut(s)	1094, 2538, 3260
BseYI	CCCAGC	1 cut(s)	1201
BsgI	GTGCAG	3 cut(s)	1172, 2718, 3374
BshFI	GGCC	7 cut(s)	61, 1277, 1344, 2213, 2332, 2485, 2798
BshNI	GGYRCC	1 cut(s)	1544
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	4 cut(s)	1221, 2120, 2281, 3112
BsiHKCI	CYCGRG	2 cut(s)	2726, 3122
BsiSI	CCGG	6 cut(s)	689, 836, 1278, 1441, 1998, 2440
BslFI	GGGAC	3 cut(s)	982, 2336, 2717
BslI	CCNNNNNNNGG	6 cut(s)	407, 842, 914, 2256, 2933, 3052
BsmAI	GTCTC	3 cut(s)	1024, 1672, 2781
BsmFI	GGGAC	3 cut(s)	982, 2336, 2717
BsnI	GGCC	7 cut(s)	61, 1277, 1344, 2213, 2332, 2485, 2798
BsoBI	CYCGRG	2 cut(s)	2726, 3122
Bsp1286I	GDGCHC	5 cut(s)	1221, 2120, 2281, 2832, 3112
Bsp1407I	TGTACA	2 cut(s)	1453, 2970
Bsp1720I	GCTNAGC	1 cut(s)	779
BspACI	CCGC	1 cut(s)	2685
BspANI	GGCC	7 cut(s)	61, 1277, 1344, 2213, 2332, 2485, 2798
BspDI	ATCGAT	1 cut(s)	81
BspHI	TCATGA	2 cut(s)	2128, 2674
BspLI	GGNNCC	6 cut(s)	221, 1401, 1546, 2566, 2612, 3283
BspMAI	CTGCAG	4 cut(s)	792, 998, 1161, 3144
BspMI	ACCTGC	2 cut(s)	709, 2894
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	4 cut(s)	1183, 1471, 1831, 3017
BspT107I	GGYRCC	1 cut(s)	1544
BspTI	CTTAAG	1 cut(s)	1594
BsrFI	RCCGGY	1 cut(s)	1277
BsrGI	TGTACA	2 cut(s)	1453, 2970
BsrI	ACTGG	8 cut(s)	221, 298, 391, 535, 1330, 1665, 1834, 2050
BssAI	RCCGGY	1 cut(s)	1277
BssECI	CCNNGG	3 cut(s)	1609, 2333, 2560
BssT1I	CCWWGG	3 cut(s)	1609, 2333, 2560
Bst4CI	ACNGT	9 cut(s)	452, 851, 1225, 1535, 1549, 1851, 2079, 2765, 2899
Bst6I	CTCTTC	4 cut(s)	101, 202, 1777, 3065
BstAFI	CTTAAG	1 cut(s)	1594
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstAUI	TGTACA	2 cut(s)	1453, 2970
BstC8I	GCNNGC	7 cut(s)	312, 485, 565, 732, 785, 920, 2853
BstF5I	GGATG	6 cut(s)	697, 1669, 1734, 1839, 2426, 3364
BstHHI	GCGC	1 cut(s)	563
BstMAI	GTCTC	3 cut(s)	1024, 1672, 2781
BstNSI	RCATGY	3 cut(s)	676, 787, 2647
BstPAI	GACNNNNGTC	1 cut(s)	2080
BstSCI	CCNGG	3 cut(s)	687, 1997, 2439
BstSFI	CTRYAG	5 cut(s)	788, 994, 1157, 2775, 3140
BstV2I	GAAGAC	5 cut(s)	94, 1013, 1283, 2466, 2561
BstX2I	RGATCY	2 cut(s)	1303, 1476
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	2 cut(s)	1303, 1476
Bsu15I	ATCGAT	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	2930
BsuRI	GGCC	7 cut(s)	61, 1277, 1344, 2213, 2332, 2485, 2798
BsuTUI	ATCGAT	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	2979
BtsCI	GGATG	6 cut(s)	697, 1669, 1734, 1839, 2426, 3364
BtsI	GCAGTG	1 cut(s)	3334
BtsIMutI	CAGTG	6 cut(s)	282, 1323, 1474, 1827, 2043, 3334
BveI	ACCTGC	2 cut(s)	709, 2894
Cac8I	GCNNGC	7 cut(s)	312, 485, 565, 732, 785, 920, 2853
CaiI	CAGNNNCTG	2 cut(s)	505, 796
CciI	TCATGA	2 cut(s)	2128, 2674
CfoI	GCGC	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	1277
Cfr13I	GGNCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
ClaI	ATCGAT	1 cut(s)	81
CseI	GACGC	1 cut(s)	802
CspCI	CAANNNNNGTGG	2 cut(s)	894, 929
DraIII	CACNNNGTG	1 cut(s)	3052
EaeI	YGGCCR	3 cut(s)	1275, 2211, 2483
Eam1104I	CTCTTC	4 cut(s)	101, 202, 1777, 3065
EarI	CTCTTC	4 cut(s)	101, 202, 1777, 3065
Ecl136II	GAGCTC	1 cut(s)	1219
Eco130I	CCWWGG	3 cut(s)	1609, 2333, 2560
Eco24I	GRGCYC	2 cut(s)	1221, 2832
Eco32I	GATATC	1 cut(s)	2714
Eco47I	GGWCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
Eco53kI	GAGCTC	1 cut(s)	1219
Eco57I	CTGAAG	3 cut(s)	210, 482, 590
Eco81I	CCTNAGG	1 cut(s)	978
Eco88I	CYCGRG	2 cut(s)	2726, 3122
EcoICRI	GAGCTC	1 cut(s)	1219
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	2714
EcoT14I	CCWWGG	3 cut(s)	1609, 2333, 2560
EcoT38I	GRGCYC	2 cut(s)	1221, 2832
ErhI	CCWWGG	3 cut(s)	1609, 2333, 2560
FalI	AAGNNNNNCTT	2 cut(s)	1361, 1393
FaqI	GGGAC	3 cut(s)	982, 2336, 2717
FbaI	TGATCA	3 cut(s)	3094, 3298, 3318
FokI	GGATG	6 cut(s)	704, 1676, 1721, 1846, 2433, 3351
FriOI	GRGCYC	2 cut(s)	1221, 2832
FspBI	CTAG	8 cut(s)	311, 1301, 1626, 1952, 2121, 2172, 2393, 2993
GlaI	GCGC	1 cut(s)	562
GsaI	CCCAGC	1 cut(s)	1205
GsuI	CTGGAG	2 cut(s)	678, 953
HaeIII	GGCC	7 cut(s)	61, 1277, 1344, 2213, 2332, 2485, 2798
HapII	CCGG	6 cut(s)	689, 836, 1278, 1441, 1998, 2440
HgaI	GACGC	1 cut(s)	802
HhaI	GCGC	1 cut(s)	563
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	2 cut(s)	148, 865
HindII	GTYRAC	2 cut(s)	148, 865
HindIII	AAGCTT	6 cut(s)	920, 1000, 1370, 1970, 2858, 3100
HpaII	CCGG	6 cut(s)	689, 836, 1278, 1441, 1998, 2440
Hpy166II	GTNNAC	9 cut(s)	72, 148, 865, 899, 1712, 2437, 2669, 2782, 2971
Hpy8I	GTNNAC	9 cut(s)	72, 148, 865, 899, 1712, 2437, 2669, 2782, 2971
HpyCH4III	ACNGT	9 cut(s)	452, 851, 1225, 1535, 1549, 1851, 2079, 2765, 2899
HpyCH4IV	ACGT	3 cut(s)	116, 150, 438
HpySE526I	ACGT	3 cut(s)	116, 150, 438
HspAI	GCGC	1 cut(s)	561
KpnI	GGTACC	1 cut(s)	1548
Ksp22I	TGATCA	3 cut(s)	3094, 3298, 3318
LmnI	GCTCC	6 cut(s)	547, 1081, 1216, 2570, 2655, 2929
LweI	GCATC	1 cut(s)	2411
MaeI	CTAG	8 cut(s)	311, 1301, 1626, 1952, 2121, 2172, 2393, 2993
MaeII	ACGT	3 cut(s)	116, 150, 438
MaeIII	GTNAC	6 cut(s)	280, 630, 1094, 1328, 1598, 2687
MfeI	CAATTG	1 cut(s)	3018
MflI	RGATCY	2 cut(s)	1303, 1476
MhlI	GDGCHC	5 cut(s)	1221, 2120, 2281, 2832, 3112
MlsI	TGGCCA	2 cut(s)	2213, 2485
MluNI	TGGCCA	2 cut(s)	2213, 2485
MlyI	GAGTC	4 cut(s)	1297, 1769, 2318, 3036
MmeI	TCCRAC	5 cut(s)	237, 2588, 2916, 3050, 3401
Mox20I	TGGCCA	2 cut(s)	2213, 2485
MroXI	GAANNNNTTC	2 cut(s)	495, 648
MscI	TGGCCA	2 cut(s)	2213, 2485
MseI	TTAA	9 cut(s)	291, 512, 1364, 1595, 1725, 1754, 2205, 2793, 3171
MslI	CAYNNNNRTG	4 cut(s)	1832, 2763, 2987, 3163
Msp20I	TGGCCA	2 cut(s)	2213, 2485
MspA1I	CMGCKG	2 cut(s)	1156, 1354
MspCI	CTTAAG	1 cut(s)	1594
MspI	CCGG	6 cut(s)	689, 836, 1278, 1441, 1998, 2440
MspR9I	CCNGG	3 cut(s)	689, 1999, 2441
MunI	CAATTG	1 cut(s)	3018
NciI	CCSGG	3 cut(s)	689, 1999, 2441
NheI	GCTAGC	1 cut(s)	310
NlaIV	GGNNCC	6 cut(s)	221, 1401, 1546, 2566, 2612, 3283
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	3 cut(s)	676, 787, 2647
PaeI	GCATGC	1 cut(s)	787
PagI	TCATGA	2 cut(s)	2128, 2674
PaqCI	CACCTGC	1 cut(s)	709
PciI	ACATGT	1 cut(s)	672
PdmI	GAANNNNTTC	2 cut(s)	495, 648
PfeI	GAWTC	8 cut(s)	574, 829, 1464, 1494, 1675, 1693, 2306, 2534
PflFI	GACNNNGTC	1 cut(s)	796
PflMI	CCANNNNNTGG	1 cut(s)	3052
PfoI	TCCNGGA	1 cut(s)	687
PleI	GAGTC	4 cut(s)	1296, 1768, 2318, 3036
PpsI	GAGTC	4 cut(s)	1296, 1768, 2318, 3036
PpuMI	RGGWCCY	1 cut(s)	502
PscI	ACATGT	1 cut(s)	672
PshAI	GACNNNNGTC	1 cut(s)	2080
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	2006
Psp124BI	GAGCTC	1 cut(s)	1221
Psp5II	RGGWCCY	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	1201
PspN4I	GGNNCC	6 cut(s)	221, 1401, 1546, 2566, 2612, 3283
PspPI	GGNCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
PspPPI	RGGWCCY	1 cut(s)	502
PsrI	GAACNNNNNNTAC	2 cut(s)	2015, 2047
PstI	CTGCAG	4 cut(s)	792, 998, 1161, 3144
PstNI	CAGNNNCTG	2 cut(s)	505, 796
PsuI	RGATCY	2 cut(s)	1303, 1476
PsyI	GACNNNGTC	1 cut(s)	796
PvuII	CAGCTG	2 cut(s)	1156, 1354
RseI	CAYNNNNRTG	4 cut(s)	1832, 2763, 2987, 3163
SacI	GAGCTC	1 cut(s)	1221
SaqAI	TTAA	9 cut(s)	291, 512, 1364, 1595, 1725, 1754, 2205, 2793, 3171
Sau96I	GGNCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
ScaI	AGTACT	2 cut(s)	1659, 2724
SchI	GAGTC	4 cut(s)	1297, 1769, 2318, 3036
ScrFI	CCNGG	3 cut(s)	689, 1999, 2441
SduI	GDGCHC	5 cut(s)	1221, 2120, 2281, 2832, 3112
SfaNI	GCATC	1 cut(s)	2411
SfcI	CTRYAG	5 cut(s)	788, 994, 1157, 2775, 3140
SinI	GGWCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
SmiMI	CAYNNNNRTG	4 cut(s)	1832, 2763, 2987, 3163
SmlI	CTYRAG	2 cut(s)	1076, 1594
SmoI	CTYRAG	2 cut(s)	1076, 1594
SphI	GCATGC	1 cut(s)	787
SsiI	CCGC	1 cut(s)	2685
SspMI	CTAG	8 cut(s)	311, 1301, 1626, 1952, 2121, 2172, 2393, 2993
SstI	GAGCTC	1 cut(s)	1221
StyD4I	CCNGG	3 cut(s)	687, 1997, 2439
StyI	CCWWGG	3 cut(s)	1609, 2333, 2560
TaaI	ACNGT	9 cut(s)	452, 851, 1225, 1535, 1549, 1851, 2079, 2765, 2899
TaiI	ACGT	3 cut(s)	119, 153, 441
TaqI	TCGA	7 cut(s)	56, 81, 652, 800, 1251, 2074, 2275
TaqII	GACCGA	1 cut(s)	2874
TatI	WGTACW	6 cut(s)	1427, 1453, 1657, 2640, 2722, 2970
TfiI	GAWTC	8 cut(s)	574, 829, 1464, 1494, 1675, 1693, 2306, 2534
Tru1I	TTAA	9 cut(s)	291, 512, 1364, 1595, 1725, 1754, 2205, 2793, 3171
Tru9I	TTAA	9 cut(s)	291, 512, 1364, 1595, 1725, 1754, 2205, 2793, 3171
TscAI	CASTG	6 cut(s)	289, 1330, 1474, 1834, 2050, 3334
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspRI	CASTG	6 cut(s)	289, 1330, 1474, 1834, 2050, 3334
Tth111I	GACNNNGTC	1 cut(s)	796
Van91I	CCANNNNNTGG	1 cut(s)	3052
Vha464I	CTTAAG	1 cut(s)	1594
VpaK11BI	GGWCC	6 cut(s)	249, 502, 1400, 2816, 2886, 3282
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	4 cut(s)	331, 1027, 1360, 2339
XbaI	TCTAGA	3 cut(s)	1300, 2120, 2171
XceI	RCATGY	3 cut(s)	676, 787, 2647
XmnI	GAANNNNTTC	2 cut(s)	495, 648
XspI	CTAG	8 cut(s)	311, 1301, 1626, 1952, 2121, 2172, 2393, 2993
ZrmI	AGTACT	2 cut(s)	1659, 2724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.