Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Forward (+)

35268301 .. 35273046

Gene Structure 4746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G398600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGTTATCTCAATTCCGTTTTGACACCTTCAACCCAGGTTCATGCTGACGACCCACCTGTAAGCGGCGGGGGGCTCAGTCAGAATGGAAAGTTCAGTTATGGATATGCAAGCTCTCCGGGGAAAAGATCTTCTATGGAAGACTTTTATGAGACAAGAATTGATGGTGTTGAGGGAGAAATAGTTGGTCTCTTTGGAGTTTTTGACGGTCATGGGGGTGCACGTGCTGCTGAATATGTCAAGCAAAATCTTTTTAGTAATTTGATCAGGCATCCAAAATTTATCTCTGACACCAAATCTGCTATAGCTGATGCATACAGCCATACAGACTCTGAATTTCTGAAATCAGAAAATAATCAGAATAGAGATGCTGGGTCAACTGCTTCCACTGCGATCCTAGTTGGTGACCGTTTACTTGTCGCGAATGTTGGGGATTCCAGAGCTGTGATATGCAGGGGTGGTAACGCTATAGCTGTTTCAAGGGATCACAAGCCAGACCAGACTGATGAGCGGCAACGGATTGAGGACGCAGGAGGATTTGTAATGTGGGCTGGAACTTGGAGAGTCGGAGGTGTTCTCGCTGTTTCTCGTGCATTTGGTGATAGGCTGTTGAAGCAGTATGTCGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAACTCTCTTGAGTTCCTTATCCTTGCTAGTGATGGACTGTGGGATGTTGTCACCAATGAGGAGGCCGTCGCAATGATCAAACCAATTCAGGACCCAAAGCAGGCAGCAGAGAGGCTAATGCAGGAAGCATATCAGAGAGGAAGTGCAGACAATATTACTTGTGTCGTGGTTCGTTTCTTGGCTAACCAAGGGGGCACCTCTCGTAGCAGTTCCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

293

Amino Acids

31.51

Weight (kDa)

5.04

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	854
AccBSI	CCGCTC	1 cut(s)	511
AccII	CGCG	1 cut(s)	422
AciI	CCGC	3 cut(s)	66, 69, 511
AclWI	GGATC	3 cut(s)	388, 492, 626
AcsI	RAATTY	2 cut(s)	278, 335
AcvI	CACGTG	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	65, 760
AgsI	TTSAA	3 cut(s)	33, 480, 613
AjnI	CCWGG	2 cut(s)	36, 642
AluBI	AGCT	4 cut(s)	114, 308, 443, 473
AluI	AGCT	4 cut(s)	114, 308, 443, 473
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	146, 194
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	3 cut(s)	388, 492, 626
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	723
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	227, 764
ApoI	RAATTY	2 cut(s)	278, 335
AspS9I	GGNCC	1 cut(s)	751
AsuC2I	CCSGG	2 cut(s)	120, 874
AsuHPI	GGTGA	3 cut(s)	416, 611, 703
AvaII	GGWCC	1 cut(s)	751
BaeGI	GKGCMC	2 cut(s)	223, 857
BanI	GGYRCC	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	588
BbrPI	CACGTG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	214, 776
BccI	CCATC	2 cut(s)	158, 686
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	2 cut(s)	38, 644
BclI	TGATCA	2 cut(s)	264, 735
BcnI	CCSGG	2 cut(s)	120, 874
BcoDI	GTCTC	2 cut(s)	146, 194
BfaI	CTAG	2 cut(s)	398, 687
BfmI	CTRYAG	2 cut(s)	303, 468
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	4 cut(s)	67, 228, 512, 765
BlsI	GCNGC	4 cut(s)	68, 229, 513, 766
Bme1390I	CCNGG	4 cut(s)	38, 120, 644, 874
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	2 cut(s)	753, 856
BmrFI	CCNGG	4 cut(s)	38, 120, 644, 874
BmsI	GCATC	3 cut(s)	280, 301, 358
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	561, 593
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	2 cut(s)	120, 874
BsaAI	YACGTR	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	3 cut(s)	36, 119, 847
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 760
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	2 cut(s)	38, 644
BseDI	CCNNGG	3 cut(s)	36, 119, 847
BseGI	GGATG	2 cut(s)	271, 709
BseLI	CCNNNNNNNGG	2 cut(s)	65, 760
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	734
BseSI	GKGCMC	2 cut(s)	223, 857
BseXI	GCAGC	2 cut(s)	214, 776
BseYI	CCCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	725
BshNI	GGYRCC	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	119, 873
BslI	CCNNNNNNNGG	2 cut(s)	65, 760
BsmAI	GTCTC	2 cut(s)	146, 194
BsnI	GGCC	1 cut(s)	725
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	78, 223, 857
Bsp143I	GATC	6 cut(s)	128, 264, 393, 484, 631, 735
Bsp68I	TCGCGA	1 cut(s)	422
BspACI	CCGC	3 cut(s)	66, 69, 511
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	753, 856
BspPI	GGATC	3 cut(s)	388, 492, 626
BspT107I	GGYRCC	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	738
BssECI	CCNNGG	3 cut(s)	36, 119, 847
BssMI	GATC	6 cut(s)	128, 264, 393, 484, 631, 735
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	847
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	38, 644
Bst4CI	ACNGT	3 cut(s)	209, 410, 699
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	112, 762
BstDEI	CTNAG	1 cut(s)	77
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	271, 709
BstFNI	CGCG	1 cut(s)	422
BstKTI	GATC	6 cut(s)	131, 267, 396, 487, 634, 738
BstMAI	GTCTC	2 cut(s)	146, 194
BstMBI	GATC	6 cut(s)	128, 264, 393, 484, 631, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 389, 613
BstNI	CCWGG	2 cut(s)	38, 644
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	4 cut(s)	36, 118, 642, 872
BstSFI	CTRYAG	2 cut(s)	303, 468
BstSLI	GKGCMC	2 cut(s)	223, 857
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	214, 776
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	725
BtsCI	GGATG	2 cut(s)	271, 709
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
BtuMI	TCGCGA	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	112, 762
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	1 cut(s)	536
CviAII	CATG	2 cut(s)	44, 212
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	6 cut(s)	130, 266, 395, 486, 633, 737
DpnII	GATC	6 cut(s)	128, 264, 393, 484, 631, 735
Eco130I	CCWWGG	1 cut(s)	847
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	751
Eco72I	CACGTG	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	751
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	36, 642
EcoT14I	CCWWGG	1 cut(s)	847
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	2 cut(s)	47, 215
FatI	CATG	2 cut(s)	43, 211
FauI	CCCGC	1 cut(s)	62
FbaI	TGATCA	2 cut(s)	264, 735
Fnu4HI	GCNGC	4 cut(s)	67, 228, 512, 765
FokI	GGATG	2 cut(s)	258, 716
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	67, 228, 512, 765
FspBI	CTAG	2 cut(s)	398, 687
GluI	GCNGC	4 cut(s)	67, 228, 512, 765
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	2 cut(s)	119, 873
HgaI	GACGC	1 cut(s)	536
Hin1II	CATG	2 cut(s)	47, 215
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	329, 434, 564
HpaII	CCGG	2 cut(s)	119, 873
HphI	GGTGA	3 cut(s)	416, 611, 703
Hpy166II	GTNNAC	3 cut(s)	221, 378, 413
Hpy188I	TCNGA	8 cut(s)	84, 289, 334, 342, 349, 360, 569, 795
Hpy188III	TCNNGA	5 cut(s)	421, 438, 635, 668, 749
Hpy8I	GTNNAC	3 cut(s)	221, 378, 413
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	3 cut(s)	209, 410, 699
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	7 cut(s)	110, 221, 314, 453, 593, 781, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 389, 613
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	47, 215
Ksp22I	TGATCA	2 cut(s)	264, 735
Kzo9I	GATC	6 cut(s)	128, 264, 393, 484, 631, 735
Lsp1109I	GCAGC	2 cut(s)	214, 776
LweI	GCATC	3 cut(s)	280, 301, 358
MaeI	CTAG	2 cut(s)	398, 687
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	3 cut(s)	404, 461, 709
MalI	GATC	6 cut(s)	130, 266, 395, 486, 633, 737
MbiI	CCGCTC	1 cut(s)	511
MboI	GATC	6 cut(s)	128, 264, 393, 484, 631, 735
MboII	GAAGA	2 cut(s)	123, 152
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	3 cut(s)	78, 223, 857
MluCI	AATT	6 cut(s)	13, 159, 259, 278, 335, 744
MlyI	GAGTC	2 cut(s)	323, 573
MmeI	TCCRAC	1 cut(s)	547
Mph1103I	ATGCAT	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	2 cut(s)	119, 873
MspR9I	CCNGG	4 cut(s)	38, 120, 644, 874
MvaI	CCWGG	2 cut(s)	38, 644
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	227, 389, 613
NciI	CCSGG	2 cut(s)	120, 874
NdeII	GATC	6 cut(s)	128, 264, 393, 484, 631, 735
NlaIII	CATG	2 cut(s)	47, 215
NlaIV	GGNNCC	2 cut(s)	753, 856
NmuCI	GTSAC	2 cut(s)	404, 709
NruI	TCGCGA	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	642
PkrI	GCNGC	4 cut(s)	68, 229, 513, 766
PleI	GAGTC	2 cut(s)	323, 572
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	2 cut(s)	323, 572
Ppu21I	YACGTR	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	2 cut(s)	36, 642
PspCI	CACGTG	1 cut(s)	224
PspEI	GGTNACC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	2 cut(s)	36, 642
PspN4I	GGNNCC	2 cut(s)	753, 856
PspPI	GGNCC	1 cut(s)	751
PspPPI	RGGWCCY	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	128
RruI	TCGCGA	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	4 cut(s)	67, 228, 512, 765
Sau3AI	GATC	6 cut(s)	128, 264, 393, 484, 631, 735
Sau96I	GGNCC	1 cut(s)	751
SchI	GAGTC	2 cut(s)	323, 573
ScrFI	CCNGG	4 cut(s)	38, 120, 644, 874
SduI	GDGCHC	3 cut(s)	78, 223, 857
SfaNI	GCATC	3 cut(s)	280, 301, 358
SfcI	CTRYAG	2 cut(s)	303, 468
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	6 cut(s)	13, 159, 259, 278, 335, 744
SsiI	CCGC	3 cut(s)	66, 69, 511
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	2 cut(s)	398, 687
StyD4I	CCNGG	4 cut(s)	36, 118, 642, 872
StyI	CCWWGG	1 cut(s)	847
TaaI	ACNGT	3 cut(s)	209, 410, 699
TaiI	ACGT	1 cut(s)	226
TasI	AATT	6 cut(s)	13, 159, 259, 278, 335, 744
TauI	GCSGC	2 cut(s)	69, 514
TfiI	GAWTC	1 cut(s)	434
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	404, 709
TseI	GCWGC	2 cut(s)	227, 764
Tsp45I	GTSAC	2 cut(s)	404, 709
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	2 cut(s)	7, 532
TspRI	CASTG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	2 cut(s)	278, 335
XspI	CTAG	2 cut(s)	398, 687
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.