Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Reverse (-)

3187567 .. 3189107

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTGGGCTGGAACTTGGAGGGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGGCTGTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAACTCTCTTGAGTTCCTTATCCTTGCAAGTGATGGACTCTGGGATGTTGTCACCAATGAGGAGGCCGTCGCAATGATCAAACCAATTCAGGACCCAAAGCAGGCAGCGGAGAGGCTAATGCAGGAAGCATATCAGAGGGGGAGTGCAGATAACATCACGTGCGTTGTGGTGCGTTTCCTGGCTAACCAAGGGGGTTCCTCACGAAGCAATTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

112

Amino Acids

12.2

Weight (kDa)

4.73

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	3 - 91	2.8e-28	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	83
AcvI	CACGTG	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	99, 294
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	68, 160
AvaII	GGWCC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	45
BbrPI	CACGTG	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	101, 296
BclI	TGATCA	1 cut(s)	192
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	101, 296
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	210, 313
BmrFI	CCNGG	2 cut(s)	101, 296
BpuEI	CTTGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	101, 296
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	88, 192
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	210, 313
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	88, 192
BssSI	CACGAG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	101, 296
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	91, 195
BstMBI	GATC	2 cut(s)	88, 192
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 330
BstNI	CCWGG	2 cut(s)	101, 296
BstSCI	CCNGG	2 cut(s)	99, 294
BstV1I	GCAGC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	208
CviJI	RGCY	6 cut(s)	8, 64, 182, 232, 299, 333
CviKI_1	RGCY	6 cut(s)	8, 64, 182, 232, 299, 333
DpnI	GATC	2 cut(s)	90, 194
DpnII	GATC	2 cut(s)	88, 192
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	208
Eco72I	CACGTG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	99, 294
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaiI	YATR	2 cut(s)	78, 247
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	153
HphI	GGTGA	2 cut(s)	68, 160
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	4 cut(s)	92, 125, 206, 318
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	4 cut(s)	50, 143, 238, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 330
HpySE526I	ACGT	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	88, 192
Lsp1109I	GCAGC	1 cut(s)	233
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	90, 194
MboI	GATC	2 cut(s)	88, 192
MluCI	AATT	2 cut(s)	201, 325
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	8 cut(s)	12, 20, 97, 169, 172, 222, 246, 325
MroXI	GAANNNNTTC	1 cut(s)	325
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	101, 296
MvaI	CCWGG	2 cut(s)	101, 296
MwoI	GCNNNNNNNGC	2 cut(s)	70, 330
NdeII	GATC	2 cut(s)	88, 192
NlaIV	GGNNCC	2 cut(s)	210, 313
NmuCI	GTSAC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	325
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	276
PmlI	CACGTG	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	99, 294
PspCI	CACGTG	1 cut(s)	276
PspGI	CCWGG	2 cut(s)	99, 294
PspN4I	GGNNCC	2 cut(s)	210, 313
PspPI	GGNCC	1 cut(s)	208
PspPPI	RGGWCCY	1 cut(s)	208
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	88, 192
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	101, 296
SetI	ASST	2 cut(s)	31, 278
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	201, 325
SsiI	CCGC	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	99, 294
StyI	CCWWGG	1 cut(s)	304
TaiI	ACGT	1 cut(s)	278
TasI	AATT	2 cut(s)	201, 325
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.